Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60970 278 / 4e-97 SNARE-like superfamily protein (.1) AT3G09800 270 / 9e-94 SNARE-like superfamily protein (.1) AT4G08520 268 / 7e-93 SNARE-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G043200 [exp] 259 / 2e-89 AT1G60970 288 / 4e-101 SNARE-like superfamily protein (.1) Potri.001G197200 [exp] 257 / 8e-89 AT3G09800 287 / 1e-100 SNARE-like superfamily protein (.1) Potri.007G025400 [exp] 44 / 9e-06 AT3G50860 296 / 1e-104 Clathrin adaptor complex small chain family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037624 [exp] 258 / 8e-89 AT4G08520 287 / 3e-100 SNARE-like superfamily protein (.1) Lus10006883 [exp] 258 / 8e-89 AT4G08520 287 / 3e-100 SNARE-like superfamily protein (.1) Lus10025383 [exp] 244 / 3e-83 AT1G60970 235 / 6e-80 SNARE-like superfamily protein (.1) Lus10015263 [exp] 44 / 1e-06 AT1G60970 55 / 4e-11 SNARE-like superfamily protein (.1) Lus10012924 [exp] 41 / 9e-05 AT2G19790 280 / 6e-99 SNARE-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0431 [poplar] [flax] PF PF01217 [poplar] [flax] Clat_adaptor_s Clathrin adaptor complex small chain
Representative CDS sequence Show only first row Show all	>Potri.001G352900.2 pacid=42789694 polypeptide=Potri.001G352900.2.p locus=Potri.001G352900 ID=Potri.001G352900.2.v4.1 annot-version=v4.1 ATGGAGCTGTGCCCTTGCGTAAAAAATATCCTTCTACTGGATTTTGAAGGGAAGCGTGTGGCTTCCAAGTATTTTTGTGATGACTGGCCAACTAATGGTG CCAAAGAAGCTTTTGAGAAAGCTGTGTTTAACAAGACTCAAAAGACTAATGCACGCTCGGAAGTTGAGGTAACAATGCTTGAGAACAACATTGTTGTTTA CAAGTTTGTTCAAGATCTACACTTTTTTGTTACTGGAGGTGAAGAAGAAAATGAGGTCATCTTAGCCACAGTCCTTCAAGGGTTCTTTGATGCAGTTGGC CTTCTCCTTAGAGGCAATGTAGAGAAAAGAGAGGCACTTGAGTATCTAGATCTCATCCTGCTGTGCATTGATGAAATTGTTGATGGCGGTATTATTTTGG AAACCGATGCAAATGTCATTGTGGGGAAGGTTGCAAGTCATAGTACAGTTGCTGAAGGATTGTCTGAGCAGACATTCTCACAAGCACTGGCAACTGCACG GGAACATCTAGCAAGGTCCCTTCTTAAGTGA
AA sequence Show only first row Show all	>Potri.001G352900.2 pacid=42789694 polypeptide=Potri.001G352900.2.p locus=Potri.001G352900 ID=Potri.001G352900.2.v4.1 annot-version=v4.1 MELCPCVKNILLLDFEGKRVASKYFCDDWPTNGAKEAFEKAVFNKTQKTNARSEVEVTMLENNIVVYKFVQDLHFFVTGGEEENEVILATVLQGFFDAVG LLLRGNVEKREALEYLDLILLCIDEIVDGGIILETDANVIVGKVASHSTVAEGLSEQTFSQALATAREHLARSLLK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G60970			SNARE-like superfamily protein...		Potri.001G352900 [exp]	0	1
AT4G20410		GAMMA-SNAP, GSN...	gamma-soluble NSF attachment p...		Potri.011G155200 [exp]	1.00	0.8992	Pt-GSNAP.1
AT3G23325			Splicing factor 3B subunit 5/R...		Potri.010G070500 [exp]	2.44	0.8555
AT5G17060		ATARFB1B	ADP-ribosylation factor B1B (....		Potri.013G088800 [exp]	10.48	0.8065
AT5G60460			Preprotein translocase Sec, Se...		Potri.009G012000 [exp]	13.67	0.8296
AT1G09630		ATRAB-A2A, ATRA...	ARABIDOPSIS RAB GTPASE A2A, RA...		Potri.003G004100 [exp]	15.09	0.8287
AT5G59890		ADF4, ATADF4	actin depolymerizing factor 4 ...		Potri.009G028200 [exp]	16.85	0.8500	Pt-ADF1.1
AT3G13410			unknown protein		Potri.001G000900 [exp]	18.05	0.8672
AT1G05720			selenoprotein family protein (...		Potri.013G126900 [exp]	21.54	0.8207
AT3G51040		RTH	RTE1-homolog (.1.2.3)		Potri.007G017900 [exp]	26.72	0.8418
AT5G42000			ORMDL family protein (.1.2)		Potri.001G086300 [exp]	28.24	0.8415

Compare expression of checked genes

Potri.001G352900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.