Plant FIBer expression Database

Potri.001G353000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G29820 713 / 0 Magnesium transporter CorA-like family protein (.1.2)
AT1G29830 662 / 0 Magnesium transporter CorA-like family protein (.1.2.3)
AT2G42950 623 / 0 Magnesium transporter CorA-like family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004605
[exp]
745 / 0 AT1G29820 729 / 0.0 Magnesium transporter CorA-like family protein (.1.2)
Lus10004542
[exp]
178 / 5e-54 AT1G29820 169 / 2e-51 Magnesium transporter CorA-like family protein (.1.2)
PFAM info
Representative CDS sequence
>Potri.001G353000.3 pacid=42789798 polypeptide=Potri.001G353000.3.p locus=Potri.001G353000 ID=Potri.001G353000.3.v4.1 annot-version=v4.1
ATGGAACAGGGCAGCATGATGATTGAGAGTCCCTCTTCGGTGCATGAAATCATGAAATCAGAAAACAAGAGCAAGGTTTATGGTAACGGCGGAAGAGATG
TTATGCCTGGGAGTGATGTTTGGACAGATGGACTTATTTGTGCCTTTGAATTCTCTCCGAGGCGTACTCCCAAATCCACTCCCTCAACCACAACTCCTTC
TTCCTCCAACATGTTTAGCACCAGACACACAGTTAATAGTGAGTTATCAAAGGATGGCGGAATGCCTGAGAGACAGGAGAGTTGCAATTTATTCGAATCG
TCGTCTGTTAATCGCAATGCCCCTTCTTCTGATGCTCAGAAGAAGATCCTCCCATCAAGACAGGACAGGCATGAGGATGGCCGTTGGATACCCATTGGCT
GGGCTAGGATTTCTCAGCTTGTCCAAACTGTGCAAATTGACGGTGACTGGCCAACGCAGCAAGTAGGGTTGCCGGATGATGAACTCGGTCCTACTGTTGC
AGATTTAGCAGCTCCCTATTGGGAGCGTCCAGCCGGCCCTACTTGGTGGTGTCATGTCGCCGCAAGTCACACCTCTGTCCAGGCATGGCTCAACAATGCT
AAGTGGTTACATCCTGCCATCAGTTTAGCTTTGAGAGATGAAAGTCGACTCATCAGTGAGCGGATGAAGCACCTTCTTTATGAGGTCCCAGTAAGGGTTG
CTGGAGGTCTGCTGTTTGAGCTCTTGGGACAATCCGCCGGCGATCCATTTGTTGATGAGGATGACATTCCTGTTGTACTGCGCTCCTGGCATGCACAAAA
CTTTCTTATAACTGCACTGCACATAAAGGGGCATGTGTCAAGAGTGAATGTTTTGGGTATCACTGAAGTTCAGGAACTTCTTTTTCTTGGAGGCTGTAAT
GGTCCAAAGACAGTGCATGAGGTCATTGCACAACTAGCTAGTCGGATGTCTAGGTGGGATGATAGGCTGTTTCGAAAATCTATATTCGGGGAAGCAGATG
AGATTGAGCTGAAGTTTGTGAACAGGAGAAACTATGAAGATATGAGTCTCTTCAGTATTATCTTGAACCAAGAAATCAGAAGGTTGTCAAGACAGGTTAT
CAGAGTGAAATGGTCACTCCACGCAAGAGAGGAGATTGTTTTCGAGCTTCTACATCATTTGAGGGGAAATGCAGCAAGAATGTTGCTGGAGGAAATAAGA
AAGAGTACAAGACAAATGATAGAGGAGCAAGAAGCTGTTCGAGGTCGTTTGTTTACTATTCAAGATGTTATGCAAAGCACTGTTCGGGCATGGTTGCAGG
ATAGAAGCCTTCGTGTAACCCATAATTTGGCTGTTTTTGGAGGCTGTGGTCTTGTGCTTTCTATCATCACTGGGTTATTTGGGATCAATGTTGATGGGAT
GCCTGGAGCATCTGGTACACCATATGCATTTGCTCTATTTACTGGCATCCTCCTCTTCGTAGGATTGGTGCTGATTGCTGTTGGGTTACTTTACCTTGGA
CTGAAGAAGCCAGTCACCGAAGAGCAGGTTCAAGTAAAAAAGTTGGAGCTGCAAGAATTAGTAAAGATGTTCCAGCACGAGGCAGAGACTCATGCCCAAG
TTCGTAAAACTGTGCGTCGCAATAACTTGCCACCAACTTCTGGAGATATTTTCTCAGATGATGTGGATTATGTTCTCATCCAATGA
AA sequence
>Potri.001G353000.3 pacid=42789798 polypeptide=Potri.001G353000.3.p locus=Potri.001G353000 ID=Potri.001G353000.3.v4.1 annot-version=v4.1
MEQGSMMIESPSSVHEIMKSENKSKVYGNGGRDVMPGSDVWTDGLICAFEFSPRRTPKSTPSTTTPSSSNMFSTRHTVNSELSKDGGMPERQESCNLFES
SSVNRNAPSSDAQKKILPSRQDRHEDGRWIPIGWARISQLVQTVQIDGDWPTQQVGLPDDELGPTVADLAAPYWERPAGPTWWCHVAASHTSVQAWLNNA
KWLHPAISLALRDESRLISERMKHLLYEVPVRVAGGLLFELLGQSAGDPFVDEDDIPVVLRSWHAQNFLITALHIKGHVSRVNVLGITEVQELLFLGGCN
GPKTVHEVIAQLASRMSRWDDRLFRKSIFGEADEIELKFVNRRNYEDMSLFSIILNQEIRRLSRQVIRVKWSLHAREEIVFELLHHLRGNAARMLLEEIR
KSTRQMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGLVLSIITGLFGINVDGMPGASGTPYAFALFTGILLFVGLVLIAVGLLYLG
LKKPVTEEQVQVKKLELQELVKMFQHEAETHAQVRKTVRRNNLPPTSGDIFSDDVDYVLIQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G29820 Magnesium transporter CorA-lik... Potri.001G353000
[exp]
0 1
AT5G62000 ARF ORE14, HSS, ARF... ORESARA 14, HLS1 SUPPRESSOR, A... Potri.003G163600
[exp]
9.64 0.7999
AT1G23380 HD KNAT6S, KNAT6L,... KNOTTED1-like homeobox gene 6 ... Potri.005G014200
[exp]
10.09 0.7979
AT1G17110 UBP15 ubiquitin-specific protease 15... Potri.011G095200
[exp]
10.39 0.7945 Pt-UBP15.2
AT3G07040 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRI... Potri.007G123200
[exp]
16.79 0.8248
AT2G32000 DNA topoisomerase, type IA, co... Potri.014G148800
[exp]
26.75 0.7504
AT1G04520 PDLP2 plasmodesmata-located protein ... Potri.010G065800
[exp]
26.94 0.7835
AT5G59010 Protein kinase protein with te... Potri.001G246400
[exp]
36.27 0.7726
AT1G54400 HSP20-like chaperones superfam... Potri.013G054800
[exp]
39.34 0.8148
Potri.004G011600
[exp]
40.89 0.7940
AT3G48540 Cytidine/deoxycytidylate deami... Potri.012G097800
[exp]
40.91 0.7861

Potri.001G353000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.