Plant FIBer expression Database

Potri.001G353250 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.001G353250.1 pacid=42792059 polypeptide=Potri.001G353250.1.p locus=Potri.001G353250 ID=Potri.001G353250.1.v4.1 annot-version=v4.1
ATGATTTTCAGGGATATCCCATTATCAGTTCTTAATCAATCCCCAAGTTTCATCCTCAAGAACATTAACCGAAATCGTCTACTGTTAGAGGATGATGTCA
GGCACCACTTACCTTTCAGATGGGACTTCCAGATCATCAAATATCCAGGGACGATCATCAAAGTAACCATACAGCAAACAGTTGAACGTTTACATACAGA
AGTTATGCAAAAAGAGCAATTCCATGTAAGTATCTGTCATCATCAACTATCAGTAGGTTTGAATCTCAACACGGCAACACCCTCCACTTTCCTCTATTTC
ACTATCCAAGGCCAGAGTCAAAATCAGTCGAAAGAAATTGACACTGCAGACCTCATGGCATTTCATCTCAGTCAAGAAGCCTCGATTTTGAGATTTAGTG
GAGGAGACCATCTCCATGAGCTACCTATTAATGTAATCTGGCAAGGCAGAATCTGA
AA sequence
>Potri.001G353250.1 pacid=42792059 polypeptide=Potri.001G353250.1.p locus=Potri.001G353250 ID=Potri.001G353250.1.v4.1 annot-version=v4.1
MIFRDIPLSVLNQSPSFILKNINRNRLLLEDDVRHHLPFRWDFQIIKYPGTIIKVTIQQTVERLHTEVMQKEQFHVSICHHQLSVGLNLNTATPSTFLYF
TIQGQSQNQSKEIDTADLMAFHLSQEASILRFSGGDHLHELPINVIWQGRI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.001G353250
[exp]
0 1
AT5G11000 Plant protein of unknown funct... Potri.006G261300
[exp]
4.24 0.6115
AT3G05320 O-fucosyltransferase family pr... Potri.015G117500
[exp]
8.00 0.5844
AT1G69340 appr-1-p processing enzyme fam... Potri.010G161500
[exp]
13.11 0.6095
AT5G61010 ATEXO70E2 exocyst subunit exo70 family p... Potri.015G058200
[exp]
13.34 0.6119
AT2G03890 UBDKGAMMA7, ATP... UBIQUITIN-LIKE DOMAIN KINASE G... Potri.008G112200
[exp]
22.58 0.5916
AT5G56090 COX15 cytochrome c oxidase 15 (.1) Potri.001G469701
[exp]
32.40 0.5759
AT5G05930 ATGC1 ARABIDOPSIS GUANYLYL CYCLASE 1... Potri.008G062100
[exp]
33.46 0.5472
AT3G27870 ATPase E1-E2 type family prote... Potri.001G349100
[exp]
34.07 0.5791
AT2G46270 bZIP GBF3 G-box binding factor 3 (.1.2) Potri.002G167100
[exp]
35.72 0.5401 Pt-GBF3.2
Potri.012G017950
[exp]
41.80 0.5154

Potri.001G353250 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.