Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29395 185 / 1e-58 COR413IM1, COR413-TM1, COR414-TM1 cold regulated 414 thylakoid membrane 1, COLD REGULATED 314 THYLAKOID MEMBRANE 1, COLD REGULATED 314 INNER MEMBRANE 1 (.1) AT1G29390 181 / 5e-57 COR413IM2, COR314-TM2 COLD REGULATED 314 INNER MEMBRANE 2, cold regulated 314 thylakoid membrane 2 (.1.2) AT4G37220 48 / 9e-07 Cold acclimation protein WCOR413 family (.1) AT3G50830 48 / 1e-06 ATCOR413-PM2, COR413-PM2 cold-regulated 413-plasma membrane 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G033801 [exp] 54 / 1e-08 AT3G50830 282 / 1e-97 cold-regulated 413-plasma membrane 2 (.1) Potri.004G149100 [exp] 49 / 6e-07 AT3G50830 250 / 4e-85 cold-regulated 413-plasma membrane 2 (.1) Potri.009G109800 [exp] 47 / 4e-06 AT3G50830 238 / 4e-80 cold-regulated 413-plasma membrane 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015258 [exp] 191 / 5e-61 AT1G29390 223 / 1e-73 COLD REGULATED 314 INNER MEMBRANE 2, cold regulated 314 thylakoid membrane 2 (.1.2) Lus10025378 [exp] 187 / 2e-59 AT1G29390 225 / 2e-74 COLD REGULATED 314 INNER MEMBRANE 2, cold regulated 314 thylakoid membrane 2 (.1.2) Lus10004599 [exp] 168 / 1e-51 AT1G29395 201 / 9e-65 cold regulated 414 thylakoid membrane 1, COLD REGULATED 314 THYLAKOID MEMBRANE 1, COLD REGULATED 314 INNER MEMBRANE 1 (.1) Lus10004547 [exp] 112 / 4e-30 AT1G29395 140 / 3e-41 cold regulated 414 thylakoid membrane 1, COLD REGULATED 314 THYLAKOID MEMBRANE 1, COLD REGULATED 314 INNER MEMBRANE 1 (.1) Lus10027946 [exp] 50 / 2e-07 AT3G50830 247 / 5e-84 cold-regulated 413-plasma membrane 2 (.1) Lus10021020 [exp] 49 / 6e-07 AT4G37220 258 / 3e-88 Cold acclimation protein WCOR413 family (.1) Lus10012034 [exp] 47 / 3e-06 AT3G50830 250 / 4e-85 cold-regulated 413-plasma membrane 2 (.1) Lus10027945 [exp] 44 / 3e-05 AT4G37220 245 / 4e-83 Cold acclimation protein WCOR413 family (.1) Lus10012035 [exp] 43 / 8e-05 AT4G37220 242 / 6e-82 Cold acclimation protein WCOR413 family (.1) Lus10016782 [exp] 41 / 0.0002 AT3G50830 277 / 9e-96 cold-regulated 413-plasma membrane 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05562 [poplar] [flax] WCOR413 Cold acclimation protein WCOR413
Representative CDS sequence Show only first row Show all	>Potri.001G353500.1 pacid=42790735 polypeptide=Potri.001G353500.1.p locus=Potri.001G353500 ID=Potri.001G353500.1.v4.1 annot-version=v4.1 ATGAGTCTGCTGATATCTATATCACCACCAGCTGCACAGTCTTTCTTTCTCGCCGACAGCAGCGGCAGCAAGAAGAAGCAGTTTCTTTCTATACAAAACC CTCTTAGGTCTCCTACAGTCACACCACTCTCGAGCTCTTTCACCACCTTCAATCCTCTTAGATTATCGATAAAGAGCAATGAAATGATGATGAAGATAAA GAGGAAGGAATCGGGAAGAGGGTTTGGTGCTGTTTGTCATGCTGGATCCCTCACTACTCCTAGTCTCCCCTGGATTTCCGCTCTCTCTTCTGCGGTGTTG GTGCTGGCAAAAGGCACTGCTGTCCAAAAGTCCTTTCTTGTTCCTTTATTTGCTCTCCAAGCACCGCCAGCCGTCATTTCATGGATCAAGGGTGAATATG GCATTTGGACTGCATTTCTTGCCCTTCTCTTCCGTCTCTTTTTCTTTATTCCCGGTGAACTTGAGCTGCCGTTTATGGCGTTGCTCTTGGTAATTGTGGC TCCTTATCAAGTTATGAACATAAGGGGAAAGCAAGAAGGTGCTATTGTTGGCTTGGTGATTGCAGCCTATTTGGCTTTCCAGCATTTTTCACGGATAGGG AATATGCAGAGAGCATTTGAGCAAGGTTCAGTTGTTGCCACCATAGCTGTTGTGTGTGTTGTTGTCACATCTTGCTTGCTCTTGATCTGA
AA sequence Show only first row Show all	>Potri.001G353500.1 pacid=42790735 polypeptide=Potri.001G353500.1.p locus=Potri.001G353500 ID=Potri.001G353500.1.v4.1 annot-version=v4.1 MSLLISISPPAAQSFFLADSSGSKKKQFLSIQNPLRSPTVTPLSSSFTTFNPLRLSIKSNEMMMKIKRKESGRGFGAVCHAGSLTTPSLPWISALSSAVL VLAKGTAVQKSFLVPLFALQAPPAVISWIKGEYGIWTAFLALLFRLFFFIPGELELPFMALLLVIVAPYQVMNIRGKQEGAIVGLVIAAYLAFQHFSRIG NMQRAFEQGSVVATIAVVCVVVTSCLLLI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G29395		COR413IM1, COR4...	cold regulated 414 thylakoid m...		Potri.001G353500 [exp]	0	1
AT4G35300		TMT2	tonoplast monosaccharide trans...		Potri.002G006200 [exp]	21.14	0.8182
AT1G68220			Protein of unknown function (D...		Potri.010G120500 [exp]	24.37	0.7743
AT3G20870		ZTP29	zinc transporter 29, ZIP metal...		Potri.001G018800 [exp]	25.45	0.7970
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Potri.012G089900 [exp]	34.64	0.7554	CYP71AP2v1
AT3G21790			UDP-Glycosyltransferase superf...		Potri.006G007400 [exp]	55.42	0.7907
AT1G20080		SYT2, NTMCTYPE1...	synaptotagmin 2, Calcium-depen...		Potri.005G241700 [exp]	58.20	0.7426
AT2G29670			Tetratricopeptide repeat (TPR)...		Potri.009G044200 [exp]	65.96	0.7661
AT4G37560			Acetamidase/Formamidase family...		Potri.005G145400 [exp]	66.56	0.7791
AT3G49290		ABIL2	ABL interactor-like protein 2 ...		Potri.003G142800 [exp]	95.21	0.7223
AT1G33540		SCPL18	serine carboxypeptidase-like 1...		Potri.001G290900 [exp]	103.28	0.7593

Compare expression of checked genes

Potri.001G353500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.