Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76750 120 / 2e-35 Protein of unknown function (DUF1278) (.1) AT4G39340 97 / 7e-27 Protein of unknown function (DUF1278) (.1) AT2G21750 96 / 2e-26 Protein of unknown function (DUF1278) (.1) AT2G21740 91 / 1e-24 Protein of unknown function (DUF1278) (.1) AT5G64720 50 / 2e-08 Protein of unknown function (DUF1278) (.1) AT4G35165 43 / 8e-06 Protein of unknown function (DUF1278) (.1) AT5G54062 43 / 2e-05 unknown protein AT2G14378 41 / 4e-05 Protein of unknown function (DUF1278) (.1) AT5G52965 38 / 0.0003 Protein of unknown function (DUF1278) (.1) AT5G52975 38 / 0.0005 Protein of unknown function (DUF1278) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G077000 [exp] 172 / 5e-56 AT1G76750 127 / 6e-38 Protein of unknown function (DUF1278) (.1) Potri.003G191800 [exp] 144 / 2e-45 AT1G76750 115 / 7e-34 Protein of unknown function (DUF1278) (.1) Potri.001G306700 [exp] 103 / 1e-29 AT1G76750 113 / 3e-33 Protein of unknown function (DUF1278) (.1) Potri.001G306600 [exp] 91 / 2e-24 AT2G21740 112 / 7e-33 Protein of unknown function (DUF1278) (.1) Potri.011G078401 [exp] 79 / 5e-20 AT1G76750 54 / 3e-10 Protein of unknown function (DUF1278) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004598 [exp] 126 / 9e-38 AT1G76750 131 / 2e-39 Protein of unknown function (DUF1278) (.1) Lus10004548 [exp] 122 / 4e-36 AT1G76750 130 / 4e-39 Protein of unknown function (DUF1278) (.1) Lus10027057 [exp] 42 / 3e-05 AT1G76750 50 / 4e-08 Protein of unknown function (DUF1278) (.1) Lus10025591 [exp] 42 / 3e-05 AT1G76750 48 / 6e-08 Protein of unknown function (DUF1278) (.1) Lus10019549 [exp] 39 / 0.0002 AT5G51105 49 / 4e-08 Protein of unknown function (DUF1278) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0482 [poplar] [flax] Prolamin PF05617 [poplar] [flax] Prolamin_like Prolamin-like
Representative CDS sequence Show only first row Show all	>Potri.001G353600.1 pacid=42788712 polypeptide=Potri.001G353600.1.p locus=Potri.001G353600 ID=Potri.001G353600.1.v4.1 annot-version=v4.1 ATGGCTTTTAACCTTAAGCTCTCTCTTTTCATTGCTTTCTTGGCATGCAGCAGCTTGGACTGCTACAAGGCCAGGGCACGACCATCGGCCTCAGTCTCAA ACCTCATGGCTCGCTTAAAACTAGACGGAGACTCACAGAATAATTGCTGGGACTCTTTGGTGCAACTACAAGCATGTTCAGGGGAGATTATTCTTTTCTT CCTGAACGGCGAGACTCAGCTTGGTCGTAGCTGTTGCCAGGCCTTGAGGACCATCGGTGAACATTGCTGGCCTAACATGATTGACACACTCGGGTTTACA GCTGAAGAGGGACAAATTCTTGAGGGATACTGCGACAAAGCTGCCGATCCCACCACTCCGTCGCCACCAGCACCATCTGTAATGCCTGCTAAGGTCGTTC CAAAGCAAACTTAA
AA sequence Show only first row Show all	>Potri.001G353600.1 pacid=42788712 polypeptide=Potri.001G353600.1.p locus=Potri.001G353600 ID=Potri.001G353600.1.v4.1 annot-version=v4.1 MAFNLKLSLFIAFLACSSLDCYKARARPSASVSNLMARLKLDGDSQNNCWDSLVQLQACSGEIILFFLNGETQLGRSCCQALRTIGEHCWPNMIDTLGFT AEEGQILEGYCDKAADPTTPSPPAPSVMPAKVVPKQT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G76750			Protein of unknown function (D...		Potri.001G353600 [exp]	0	1
AT3G54490		RPB5E	"RNA polymerase II fifth large...		Potri.001G179300 [exp]	12.68	0.5081
AT3G06100		NIP7;1, NLM8, N...	NOD26-LIKE MIP 8, NOD26-LIKE M...		Potri.008G203300 [exp]	15.68	0.5053
					Potri.009G034150 [exp]	23.57	0.5005
AT3G12560		ATTBP2, TRFL9	TELOMERIC DNA-BINDING PROTEIN ...		Potri.010G202400 [exp]	81.78	0.4257
AT3G11980		FAR2, MS2	MALE STERILITY 2, FATTY ACID R...		Potri.006G196500 [exp]	123.45	0.4026	MS2.1
AT1G57775			Protein of unknown function (D...		Potri.004G115251 [exp]	236.48	0.3478
AT1G57775			Protein of unknown function (D...		Potri.004G115351 [exp]	236.99	0.3478
					Potri.010G033266 [exp]	237.49	0.3478

Compare expression of checked genes

Potri.001G353600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.