Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46410 407 / 6e-138 SSP4 SCP1-like small phosphatase 4 (.1.2) AT4G18140 397 / 4e-134 SSP4b SCP1-like small phosphatase 4b (.1.2.3) AT5G11860 247 / 1e-77 SSP5 SCP1-like small phosphatase 5 (.1.2.3.4) AT1G29780 113 / 2e-28 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G29770 104 / 6e-25 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G45700 94 / 3e-21 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT3G55960 94 / 4e-21 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G55900 74 / 4e-14 TIM50, EMB1860 embryo defective 1860, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT1G43600 55 / 3e-08 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G43610 55 / 5e-08 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G078300 [exp] 814 / 0 AT5G46410 419 / 1e-143 SCP1-like small phosphatase 4 (.1.2) Potri.003G173700 [exp] 248 / 6e-76 AT5G11860 388 / 2e-133 SCP1-like small phosphatase 5 (.1.2.3.4) Potri.001G054700 [exp] 234 / 1e-70 AT5G11860 380 / 2e-130 SCP1-like small phosphatase 5 (.1.2.3.4) Potri.011G072000 [exp] 99 / 1e-22 AT5G45700 230 / 5e-75 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.004G062900 [exp] 98 / 2e-22 AT5G45700 194 / 1e-60 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.006G100800 [exp] 80 / 3e-16 AT3G55960 304 / 6e-103 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.016G116700 [exp] 79 / 5e-16 AT3G55960 248 / 1e-81 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.008G068800 [exp] 76 / 6e-15 AT3G55960 342 / 3e-118 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.010G188500 [exp] 73 / 6e-14 AT3G55960 406 / 8e-144 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004596 [exp] 568 / 0 AT5G46410 398 / 3e-135 SCP1-like small phosphatase 4 (.1.2) Lus10004551 [exp] 472 / 8e-163 AT5G46410 286 / 8e-92 SCP1-like small phosphatase 4 (.1.2) Lus10025376 [exp] 463 / 6e-160 AT5G46410 343 / 2e-114 SCP1-like small phosphatase 4 (.1.2) Lus10015787 [exp] 226 / 8e-68 AT5G11860 410 / 8e-143 SCP1-like small phosphatase 5 (.1.2.3.4) Lus10037019 [exp] 164 / 8e-43 AT1G67370 621 / 0.0 ASYNAPTIC 1, DNA-binding HORMA family protein (.1) Lus10007321 [exp] 100 / 3e-23 AT5G45700 206 / 3e-65 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10029273 [exp] 99 / 8e-23 AT5G45700 211 / 4e-67 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10009890 [exp] 90 / 1e-19 AT3G55960 445 / 9e-159 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10014844 [exp] 90 / 1e-19 AT3G55960 441 / 2e-157 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10002484 [exp] 82 / 1e-16 AT3G55960 333 / 2e-114 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [poplar] [flax] HAD PF03031 [poplar] [flax] NIF NLI interacting factor-like phosphatase
Representative CDS sequence Show only first row Show all	>Potri.001G353700.1 pacid=42793195 polypeptide=Potri.001G353700.1.p locus=Potri.001G353700 ID=Potri.001G353700.1.v4.1 annot-version=v4.1 ATGCCATCATTAAAAATGAAGACCAACCTAAACATGAGCTCTCTAAGAGAAAAAAAATGTCTCAGTGTGTGTCAAAAGTCTAAAATATTATCCAAAAAAT CATGCTCCCAAGTCTCAGTTTCTCGACAAGCAGCAGAATCTGACAAGTGTGTTCAGAAATGTCAGGATGGCTATGTTGCTTCGAGTATGGAAATATACAC CCAGGGGGAGGACATTAAAACTGATGAAGCCGTTGACCAGCAAGACTTACCACGTGATGGAAATTCTCAGTTTCTGAAGCAGCCACCAACCTCTGTAGAT TCTGGCACAACTGGGGATATGGAATCTATATATAACTTTGCATCAAACTTGGAGACAATTTTTTCTCCTGTTCTGGAGCTCATTGAAGTCCACAGTGTGG CAAATATTTATGATGATGCAGGGAGTAACAGTGATCTTAACGTGCCAGGTTTGGGTATTGATGACAGTGATGATAACAGAAGCTCATGTGATTATCAAAC TTGCAACATATCAGATTTCTTTATTTCTGACATGATTATTGCTAGCTTACCATTTGATGGGAGCACTGTTGTCAATGATTTCACTGATGCCAATCCTTTT CCTGATTACAAGTACGCTGAGCCAAGTATGTTGTTTGATGTGGCTGAAGAGTGCATGATACTACCTTTTCTTGAGGATACTGCAAAAATGAGCGACTCTG ATGATATGAAATCATGTGAAGAAGCCACGATAGATTCAGATAATAGTAGCTTATATCTAGCAATTAATCAGATAAGATCCTGTGACCGGGAATCTGATCT AAACATTGACTCAGACCAAGCAGAAGACTTTGATCCTCAGTTCTTTATAAAAAATTTACCTGAATTATCTGATGTGGTTTCAAATTTTCTGCCCTCTATC CACCCTAAGGAGTCTTGCAGAAGAAAGTCCGTAACCCTAGTGCTTGATTTGGATGAAACACTTGTCCACTCAACATTGGAACACTGTGATGATGCAGACT TCACCTTTACTGTGTTTTTCAATATGAAAGAGCACATAGTGTACGTAAAACAGAGGCCTCACCTCCACACTTTCTTGGAGAGAGTTGCAGAGATGTTTGA AGTTGTTATCTTCACAGCTAGCCAGAGCATCTATGCTGCACAGCTTTTGGACATACTGGACCCTGATAGAAAGCTTATATCTCAGCGGCTTTATCGTGAA TCATGTATTTTTTCAGATGGAAGTTACACAAAAGATTTGACAGTTTTAGGTGTTGATCTTGCTAAAGTTGCCATAATTGATAATTCGCCACAGGTTTTCA GGCTGCAAGTAAATAATGGGATTCCTATTAAGAGTTGGTTTACTGATCCATCAGATTGCGCACTAATTTCATTACTACCCTTCTTAGAGACCCTGGTTGA TGCTGATGATGTCCGGCCCATAATTGCAAAGAGATTTGCTCTTGGTGATTGGACCCTTTCCTTTTCTCCTCTAAGCTCACAACTCCATGGGGTGCTCTTT CTAATTTTCCCAAAAGGTCATTTGAGGAAACATACTAGATTATCTGCTAATGGAAAGTATAGGTACGTTGGGTTATTTTGCTATTTTTCCCTGTTACTTT GTAGATACGGCACTTTGCTACAGAATGGACTCTGCTGA
AA sequence Show only first row Show all	>Potri.001G353700.1 pacid=42793195 polypeptide=Potri.001G353700.1.p locus=Potri.001G353700 ID=Potri.001G353700.1.v4.1 annot-version=v4.1 MPSLKMKTNLNMSSLREKKCLSVCQKSKILSKKSCSQVSVSRQAAESDKCVQKCQDGYVASSMEIYTQGEDIKTDEAVDQQDLPRDGNSQFLKQPPTSVD SGTTGDMESIYNFASNLETIFSPVLELIEVHSVANIYDDAGSNSDLNVPGLGIDDSDDNRSSCDYQTCNISDFFISDMIIASLPFDGSTVVNDFTDANPF PDYKYAEPSMLFDVAEECMILPFLEDTAKMSDSDDMKSCEEATIDSDNSSLYLAINQIRSCDRESDLNIDSDQAEDFDPQFFIKNLPELSDVVSNFLPSI HPKESCRRKSVTLVLDLDETLVHSTLEHCDDADFTFTVFFNMKEHIVYVKQRPHLHTFLERVAEMFEVVIFTASQSIYAAQLLDILDPDRKLISQRLYRE SCIFSDGSYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNGIPIKSWFTDPSDCALISLLPFLETLVDADDVRPIIAKRFALGDWTLSFSPLSSQLHGVLF LIFPKGHLRKHTRLSANGKYRYVGLFCYFSLLLCRYGTLLQNGLC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G46410		SSP4	SCP1-like small phosphatase 4 ...		Potri.001G353700 [exp]	0	1
AT4G14090			UDP-Glycosyltransferase superf...		Potri.017G101800 [exp]	1.41	0.9258
AT1G65430		ATARI8, ARI8	ARABIDOPSIS ARIADNE 8, ARIADNE...		Potri.002G131300 [exp]	2.00	0.9228
AT5G41350			RING/U-box superfamily protein...		Potri.003G129900 [exp]	2.23	0.9186
AT3G20770	EIL	AtEIN3, EIN3	ETHYLENE-INSENSITIVE3, Ethylen...		Potri.009G159200 [exp]	2.44	0.9202	EIN3A,EIN3.2
AT1G73730	EIL	AtEIL3, ATSLIM,...	ARABIDOPSIS THALIANA SULFUR LI...		Potri.001G015900 [exp]	2.64	0.9150	Pt-EIL3.2
AT5G15730		CRLK2, AtCRLK2	calcium/calmodulin-regulated r...		Potri.004G113400 [exp]	3.31	0.9098
AT3G13080		EST2, ATMRP3, A...	MULTIDRUG RESISTANCE PROTEIN 3...		Potri.001G362300 [exp]	3.46	0.9049	Pt-MRP3.1
AT1G21380			Target of Myb protein 1 (.1)		Potri.002G075500 [exp]	3.74	0.9008
AT5G24810			ABC1 family protein (.1.2)		Potri.018G003400 [exp]	4.24	0.9123
AT4G17900			PLATZ transcription factor fam...		Potri.003G092800 [exp]	4.24	0.9186

Compare expression of checked genes

Potri.001G353700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.