Plant FIBer expression Database

Potri.001G353800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G46420 553 / 0 16S rRNA processing protein RimM family (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011969
[exp]
645 / 0 AT5G46420 579 / 0.0 16S rRNA processing protein RimM family (.1)
Lus10004590
[exp]
630 / 0 AT5G46420 587 / 0.0 16S rRNA processing protein RimM family (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0575 EFTPs PF01782 RimM RimM N-terminal domain
CL0350 PRC-barrel PF05239 PRC PRC-barrel domain
Representative CDS sequence
>Potri.001G353800.1 pacid=42789159 polypeptide=Potri.001G353800.1.p locus=Potri.001G353800 ID=Potri.001G353800.1.v4.1 annot-version=v4.1
ATGGTCCCCACTCGGGCTTCAACCTCTAGACTCCTGAGTCCTGAGTGGAAAGACGAGCAAAAGATATCTTCTTTTCATTTAGAAGAACAATCTCTGCCTG
TTGAGAAAAAAAGGATGCAGCAGGCAGCTACACCTCTCTGTTCTCCTTCACTTCCATTCTCTAAATATCCCCTTGTTCCTCCTCTTCCAGCCCGACTTTC
TCCTGCCCTCTTACCCCCTTCTCCTCTTCAATTACTGCCCTTCAAACCTCCACGGAATTACCTTCCTGCCATCCTCTCCCCTCTCCACAGAACCTGTACG
CGCAGACACTCTCTCTCCCTAGCTACTCAAGAGACTGTTGAAACTTCAAAGAGTGAATCAGAATTTGTTGAAGTTGGGTATATTTCCAATGTTCATGGCC
TTCAGGGAGAGATTTCTGTAAAACCCACTACAGATTTTCCTGAGCTACGATTTTCCAAGCCTGGGAGAAGATGGTTAAGGCAACTAGTTTCAGGCAAAGA
TGTAATTCGGGAAGTGGAGCTGGTTGAAGGAAGAGGACACCATGGACGCAAGAGTTGGATACTTAAATTTGGGGGTATTGACACTGTGGATCGGGCTAAG
CTGCTTGTTGGGTCAACTTTACTTGTAAGAGAATATGAAAGGCCAGAGTTGGAAGAAGGAGAGTTTTATTCTCGTGATCTCATCGGAATGAGAGTGATTC
TTAAGGAAACTGGTGAATGTGTGGGAACTGTTGTTAATGTTTTCGACAATGGAGGTAATGATCTTCTGCAGGTAATGCTCTACACATCTTCAGATGTGCC
TGGTGGAACCGGAAAGTCAAAACCAGCAGAAGCAGGGGTATCTGGTCATCTTGCTTGGGTACCTTTTGTTGAAGCAATTGTTCCAGATGTCAATATGAAT
GAAAGAGAAATGAGGATTACACCTCCGAAAGGACTTCTTGAGTTAAACCTACGCCTGGATGAGAGGTCCAAGAAAGAAAGGCGTGAGCTTGAATGGAGAG
AGAGAAAGAAATTCCAAAGACGCCTTATAGCAGCAAAGAAGAAACTCTGTGAAATGGAACAAAAGCATGTATTTGATGGACTAAGATATGGGGACAAATC
TAAAAGGGGATTGCTGGCAGACCAGATTGTTGGTGTAAATTCCAAATTGCTTCAACAAGCCCTGGAAAATATAGAGATATCCTCTAAGAGATGCTCTGCA
ACTGAGTTAATCAGTGCCACAAGAACCAAGCATATAAAAAGTTCTTTGATGATATCAAAGGAGTTCATCACTTGTGCAAATGAGGAGAAACTGGGAGCAA
ATTTCAAATTGCAAGAAAAGGGATTGTCTCTCATTTCTACAGGCAAAGTGGCCATCGTTTTAGTTTTGAATGACATTGAGAAAGGAAAAGGTGATAATCC
TGGAGTAGTTGACTCTGAAAGTAGTGAGAATTCACTGCTTTTCTTCCTTCAAAAATCACTTTCTGATGATCAGACATTTGTAAAGATAGAAGACCGTGTG
TCTGTGCCGTTGATTTTGGTTTGCCCTGCACAAGAAATCCAGTCTTTGCAAAAGCTGTTCTCAAATAATGATTACTTCGCATTTGACTCCAACAAGGTAT
GGTTTTTGGAAGAAGAGAAAATTCCAGTTGTTAGTAGTTCTGAAGAAGAAGGGAAGAGACATAAAATCATGATGAAGTCGCCATGGGAAATACTGCAATC
ACCAGTTGGATCTGGAGGAGTTATTAGCTTGCTTTCTTCTGTCAATATTCCTGAGAATCTCAGCAAAATGGGCGTGGAGTATATTGAGATATGCAGTAGC
AGCCAAAATTGTGTTACTGGGAGTCCACTTCTACTTGGGTTTGTCGAGTCCCGCAAAGCAGAAATAGGGATCAAAATCGTTGAAGATACAAAAGATTTAG
AAGAAAGTTTTGACATGATATTTTCCTTGAATTTCATGAGGTTGCTGGCGCAACAAATCCATAAACTCCAGTTCTATGCAATCCCGAAGCCAAATCTGCA
TGTGGAGATGGTTGGCAAGGAGTGGGTTGATGTTGTCCCGTCATCTCCCAACTCATATCAACTTCGTTCTTCTATTTACAGTTCCTTGAATGCTTGCCCT
CTGGAGAAGATTTGTGTAATGGAAATAACAGAATAA
AA sequence
>Potri.001G353800.1 pacid=42789159 polypeptide=Potri.001G353800.1.p locus=Potri.001G353800 ID=Potri.001G353800.1.v4.1 annot-version=v4.1
MVPTRASTSRLLSPEWKDEQKISSFHLEEQSLPVEKKRMQQAATPLCSPSLPFSKYPLVPPLPARLSPALLPPSPLQLLPFKPPRNYLPAILSPLHRTCT
RRHSLSLATQETVETSKSESEFVEVGYISNVHGLQGEISVKPTTDFPELRFSKPGRRWLRQLVSGKDVIREVELVEGRGHHGRKSWILKFGGIDTVDRAK
LLVGSTLLVREYERPELEEGEFYSRDLIGMRVILKETGECVGTVVNVFDNGGNDLLQVMLYTSSDVPGGTGKSKPAEAGVSGHLAWVPFVEAIVPDVNMN
EREMRITPPKGLLELNLRLDERSKKERRELEWRERKKFQRRLIAAKKKLCEMEQKHVFDGLRYGDKSKRGLLADQIVGVNSKLLQQALENIEISSKRCSA
TELISATRTKHIKSSLMISKEFITCANEEKLGANFKLQEKGLSLISTGKVAIVLVLNDIEKGKGDNPGVVDSESSENSLLFFLQKSLSDDQTFVKIEDRV
SVPLILVCPAQEIQSLQKLFSNNDYFAFDSNKVWFLEEEKIPVVSSSEEEGKRHKIMMKSPWEILQSPVGSGGVISLLSSVNIPENLSKMGVEYIEICSS
SQNCVTGSPLLLGFVESRKAEIGIKIVEDTKDLEESFDMIFSLNFMRLLAQQIHKLQFYAIPKPNLHVEMVGKEWVDVVPSSPNSYQLRSSIYSSLNACP
LEKICVMEITE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G46420 16S rRNA processing protein Ri... Potri.001G353800
[exp]
0 1
AT3G57180 BPG2 BRASSINAZOLE\(BRZ\) INSENSITIV... Potri.006G044700
[exp]
1.41 0.9809
AT1G09130 ATP-dependent caseinolytic (Cl... Potri.013G017166
[exp]
2.64 0.9850
AT1G49970 SVR2, NCLPP5, C... SUPPRESSOR OF VARIEGATION 2, N... Potri.009G089300
[exp]
4.00 0.9800 Pt-CLPR1.1
AT5G46580 pentatricopeptide (PPR) repeat... Potri.003G089600
[exp]
4.89 0.9801
AT1G68830 STN7 STT7 homolog STN7 (.1) Potri.008G116800
[exp]
5.47 0.9791
AT3G55400 OVA1 OVULE ABORTION 1, methionyl-tR... Potri.010G207300
[exp]
7.34 0.9771
AT3G25410 Sodium Bile acid symporter fam... Potri.014G178000
[exp]
8.36 0.9744
AT1G10830 Z-ISO1.2, Z-ISO... 15-cis-zeta-carotene isomerase... Potri.014G146900
[exp]
9.16 0.9714
AT2G46100 Nuclear transport factor 2 (NT... Potri.002G162800
[exp]
9.38 0.9762
AT5G26742 EMB1138 embryo defective 1138, DEAD bo... Potri.005G000100
[exp]
9.53 0.9768

Potri.001G353800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.