Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47810 339 / 8e-121 ATVPS29, MAG1 VACUOLAR PROTEIN SORTING 29, MAIGO 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G077900 [exp] 367 / 1e-131 AT3G47810 338 / 3e-120 VACUOLAR PROTEIN SORTING 29, MAIGO 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012851 [exp] 351 / 3e-125 AT3G47810 347 / 6e-124 VACUOLAR PROTEIN SORTING 29, MAIGO 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2.3) Lus10030497 [exp] 346 / 2e-123 AT3G47810 346 / 2e-123 VACUOLAR PROTEIN SORTING 29, MAIGO 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [poplar] [flax] Calcineurin PF12850 [poplar] [flax] Metallophos_2 Calcineurin-like phosphoesterase superfamily domain
Representative CDS sequence Show only first row Show all	>Potri.001G354000.1 pacid=42792079 polypeptide=Potri.001G354000.1.p locus=Potri.001G354000 ID=Potri.001G354000.1.v4.1 annot-version=v4.1 ATGGTGTTGGTATTGGCGCTGGGGGATCTACACATACCCCACAGAGCACCTGATCTCCCTGCAAAGTTCAAGTCCATGCTTGTTCCTGGCAAGATCCAGC ACATCATTTGCACTGGCAATCTTTCTATCAAAGAAGTTCATGACTACTTGAAGACTCTTTGCCCTGACTTACATATCACTCGAGGTGAATATGATGAAGA TACTCGATATCCAGAGACCAAAACATTAACTATTGGTCAATTCAAGTTGGGACTGTGCCATGGTCATCAGGTTGTTCCGTGGGGGGATTTGGACTCACTA GCAATGCTCCAGAGGCAGCTGGATGTGGACATACTTGTGACCGGTCATACCCATCAATTCACAGCTTACAAACACGAGGGAGGTGTTGTTATAAACCCAG GGTCTGCCACCGGTGCCTACAGCAACATTACCTATGATGTGAACCCAAGCTTTGTCCTCATGGACATTGATGGCCTACGTGTGGTGGTGTATGTTTACGA GCTCATTGATGGCGAGGTTAAAGTCGACAAGATTGATTTTAAGAAGACGACTACTGCCACTCACTCCGCTCATTGA
AA sequence Show only first row Show all	>Potri.001G354000.1 pacid=42792079 polypeptide=Potri.001G354000.1.p locus=Potri.001G354000 ID=Potri.001G354000.1.v4.1 annot-version=v4.1 MVLVLALGDLHIPHRAPDLPAKFKSMLVPGKIQHIICTGNLSIKEVHDYLKTLCPDLHITRGEYDEDTRYPETKTLTIGQFKLGLCHGHQVVPWGDLDSL AMLQRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGAYSNITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDFKKTTTATHSAH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G47810		ATVPS29, MAG1	VACUOLAR PROTEIN SORTING 29, M...		Potri.001G354000 [exp]	0	1
AT5G42960			unknown protein		Potri.014G181000 [exp]	1.00	0.8485
AT5G63980		SUPO1, RON1, AL...	suppressors of PIN1 overexpres...		Potri.005G063900 [exp]	4.24	0.7898	Pt-SAL2.1
AT5G04870		AK1, ATCPK1, CP...	calcium dependent protein kina...		Potri.009G165700 [exp]	5.47	0.7259
AT3G05530		ATS6A.2, RPT5A	regulatory particle triple-A A...		Potri.013G016800 [exp]	5.47	0.7724	RPT5.2
AT3G57030			Calcium-dependent phosphotries...		Potri.016G037900 [exp]	6.16	0.7167
AT2G17390		AKR2B	ankyrin repeat-containing 2B (...		Potri.004G210100 [exp]	6.63	0.7757
AT5G05610	Alfin	AL1	alfin-like 1 (.1.2)		Potri.006G100900 [exp]	6.92	0.7060
AT5G51570			SPFH/Band 7/PHB domain-contain...		Potri.015G130600 [exp]	7.81	0.6704
AT3G58730			vacuolar ATP synthase subunit ...		Potri.001G331800 [exp]	9.48	0.7312
AT2G29900		PS2	Presenilin-2 (.1)		Potri.015G058301 [exp]	9.79	0.7243

Compare expression of checked genes

Potri.001G354000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.