Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19620 302 / 2e-97 Glycosyl hydrolase family protein (.1) AT5G64570 266 / 1e-83 ATBXL4, XYL4 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1) AT1G02640 263 / 2e-82 ATBXL2, BXL2 beta-xylosidase 2 (.1) AT5G49360 258 / 1e-80 ATBXL1, BXL1 beta-xylosidase 1 (.1) AT5G09730 250 / 1e-77 ATBXL3, XYL3, BXL3, ATBX3 beta-xylosidase 3 (.1) AT1G78060 236 / 2e-72 Glycosyl hydrolase family protein (.1) AT5G10560 228 / 4e-69 Glycosyl hydrolase family protein (.1) AT3G47000 66 / 6e-12 Glycosyl hydrolase family protein (.1) AT3G62710 66 / 7e-12 Glycosyl hydrolase family protein (.1) AT5G04885 61 / 2e-10 Glycosyl hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G114300 [exp] 365 / 1e-121 AT3G19620 776 / 0.0 Glycosyl hydrolase family protein (.1) Potri.001G294700 [exp] 291 / 3e-93 AT3G19620 1080 / 0.0 Glycosyl hydrolase family protein (.1) Potri.001G206800 [exp] 265 / 2e-83 AT5G64570 1168 / 0.0 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1) Potri.010G141400 [exp] 264 / 6e-83 AT5G49360 1113 / 0.0 beta-xylosidase 1 (.1) Potri.008G108100 [exp] 263 / 1e-82 AT5G49360 1104 / 0.0 beta-xylosidase 1 (.1) Potri.002G197200 [exp] 261 / 9e-82 AT1G02640 1189 / 0.0 beta-xylosidase 2 (.1) Potri.014G122200 [exp] 260 / 3e-81 AT1G02640 1154 / 0.0 beta-xylosidase 2 (.1) Potri.002G094000 [exp] 255 / 2e-79 AT1G78060 1077 / 0.0 Glycosyl hydrolase family protein (.1) Potri.003G022900 [exp] 254 / 3e-79 AT5G64570 1138 / 0.0 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010015 [exp] 278 / 6e-88 AT1G02640 1148 / 0.0 beta-xylosidase 2 (.1) Lus10020966 [exp] 265 / 3e-83 AT5G64570 1181 / 0.0 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1) Lus10019099 [exp] 236 / 3e-72 AT1G78060 1007 / 0.0 Glycosyl hydrolase family protein (.1) Lus10022374 [exp] 234 / 1e-71 AT1G78060 1065 / 0.0 Glycosyl hydrolase family protein (.1) Lus10004271 [exp] 219 / 8e-66 AT5G10560 989 / 0.0 Glycosyl hydrolase family protein (.1) Lus10016858 [exp] 152 / 1e-41 AT5G49360 922 / 0.0 beta-xylosidase 1 (.1) Lus10037728 [exp] 137 / 3e-40 AT5G49360 177 / 1e-52 beta-xylosidase 1 (.1) Lus10013646 [exp] 66 / 9e-12 AT5G20950 941 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10010657 [exp] 62 / 1e-10 AT5G20950 889 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10034848 [exp] 62 / 1e-10 AT5G20950 823 / 0.0 Glycosyl hydrolase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00933 [poplar] [flax] Glyco_hydro_3 Glycosyl hydrolase family 3 N terminal domain
Representative CDS sequence Show only first row Show all	>Potri.001G354250.2 pacid=42789051 polypeptide=Potri.001G354250.2.p locus=Potri.001G354250 ID=Potri.001G354250.2.v4.1 annot-version=v4.1 ATGGTTAAAGCCATTCTCCTTCTTGTTCTTGCTTTCTTAGCTGTTTGCACAGCTAGGGATATTGTTCCTTTACTCTCTATGCTTAACCACCACAGATCCC TATTAAGTAGTACTCCTAGCCTTGTTGATGTCCCTATTAACTACACTCATGTTTGTGATCCTACACGGTTTGCAAACCAAGGTATGGAAATGAAAGAATT TGGCTACTGTGACTCCTCTCTATCCTTTGAGGAAAGGGCAAAAGATCTGGTGGATCGAATGACACTAGATGAGAAGGTGCAGCAGCTGGGAAACAAAGCC ATTGGTGTGCCAAGAATAGGCCTACCTCATTATGAGTGGTGGTCCGAGGCACTGCATGGTGTCTCCAATGTCGGTCCTGCTACCTTCTTTAATGAATTGA TACCTGGCGCAACAAGTTTCCCCACTGTCATCCATACAACTGCATCCTTCAACAAGTCACTATGGAAAACCATTGGTCAGGCTGTTTCAGCTGAAGCGAG GGCAATGTACAATTTAGGGCGAGCAGGGTTAACATATTGGAGCCCTAACATAAACGTGGTTAGAGATCCTAGGTGGGGAAGAATTACAGAGACACCAGGA GAAGACCCTTTTGTGGTAGGCACATATGCTTCTAACTATGTAAGAGGATTGCAAGATGTTGAAGGAGCCGGAGAGACCAAAGATTTGAATTCTAGACCTC TCAAGGTTTCTACATGCTGTAAGCATTATACTGCTTACGATGTTGATGCATGGTTGGGAATCGACCGATACCATTATGATGCAAGGGTGACTGAGCAAGA TATCTATGTTGGAGACTTTTCAAGTTCCCTTTGA
AA sequence Show only first row Show all	>Potri.001G354250.2 pacid=42789051 polypeptide=Potri.001G354250.2.p locus=Potri.001G354250 ID=Potri.001G354250.2.v4.1 annot-version=v4.1 MVKAILLLVLAFLAVCTARDIVPLLSMLNHHRSLLSSTPSLVDVPINYTHVCDPTRFANQGMEMKEFGYCDSSLSFEERAKDLVDRMTLDEKVQQLGNKA IGVPRIGLPHYEWWSEALHGVSNVGPATFFNELIPGATSFPTVIHTTASFNKSLWKTIGQAVSAEARAMYNLGRAGLTYWSPNINVVRDPRWGRITETPG EDPFVVGTYASNYVRGLQDVEGAGETKDLNSRPLKVSTCCKHYTAYDVDAWLGIDRYHYDARVTEQDIYVGDFSSSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19620			Glycosyl hydrolase family prot...		Potri.001G354250 [exp]	0	1
AT2G24350			RNA binding (RRM/RBD/RNP motif...		Potri.006G079800 [exp]	17.60	0.6041
AT1G69940		ATPPME1	Pectin lyase-like superfamily ...		Potri.006G137100 [exp]	74.18	0.5982
AT2G37770		ChlAKR, AKR4C9	Chloroplastic aldo-keto reduct...		Potri.006G090501 [exp]	95.08	0.5182
AT3G26790	B3	FUS3	FUSCA 3, AP2/B3-like transcrip...		Potri.017G061200 [exp]	114.26	0.5815
AT2G34930			disease resistance family prot...		Potri.015G028600 [exp]	123.47	0.5869
AT5G26742		EMB1138	embryo defective 1138, DEAD bo...		Potri.005G000166 [exp]	169.37	0.5400
					Potri.001G388001 [exp]	201.00	0.5375
AT4G01580	B3		AP2/B3-like transcriptional fa...		Potri.007G035700 [exp]	221.84	0.5352

Compare expression of checked genes

Potri.001G354250 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.