Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46460 863 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G02750 546 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G09410 494 / 2e-166 pentatricopeptide (PPR) repeat-containing protein (.1) AT2G22070 482 / 9e-161 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G68930 475 / 1e-158 pentatricopeptide (PPR) repeat-containing protein (.1) AT2G27610 479 / 2e-158 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G16835 471 / 4e-158 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G16860 475 / 2e-157 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G56690 471 / 2e-157 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G37170 466 / 5e-156 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G048800 [exp] 536 / 0 AT4G02750 1099 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G005400 [exp] 536 / 0 AT1G56690 1018 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G006400 [exp] 528 / 8e-180 AT1G56690 993 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G136200 [exp] 502 / 5e-169 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.007G085500 [exp] 497 / 1e-166 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.017G091600 [exp] 492 / 6e-166 AT4G37170 924 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G018700 [exp] 486 / 3e-161 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G081700 [exp] 478 / 1e-160 AT4G16835 852 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G040100 [exp] 479 / 2e-160 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015256 [exp] 942 / 0 AT5G46460 840 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013540 [exp] 533 / 0 AT4G02750 1075 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013149 [exp] 506 / 5e-171 AT1G56690 946 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016425 [exp] 492 / 1e-164 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10033026 [exp] 474 / 2e-158 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010998 [exp] 473 / 4e-158 AT4G16835 778 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030908 [exp] 485 / 9e-157 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10030581 [exp] 477 / 1e-153 AT1G68930 910 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10013991 [exp] 461 / 7e-151 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035164 [exp] 457 / 9e-151 AT3G02010 962 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.001G354400.1 pacid=42790030 polypeptide=Potri.001G354400.1.p locus=Potri.001G354400 ID=Potri.001G354400.1.v4.1 annot-version=v4.1 ATGGCTCATATTACGCGTTACACTAGAACAATCACTCTCTCTTACACTACCTCGCTCGCTAATCACCTCAAGAACCAAAGACTGGACCAAGCTCGCCTCA TTTTTGATAAAATCCCATCTCCAAATCTTCATCTGTACACCAAGATGATTGCTGGGTATACGAGAAATGACAGGCTATGTGATGCTTTGAAACTGTTTGA TAGGATGTCTGTTAGAGATGTGGTTTCTTGGAATTCGATGATAAAAGGGTGTTTAGATTGTGGGAATTTAGGTATGGCCACAAGGTTATTTGATGAAATG CCTGAGAAGAATGTTATCTCTTGGACGACGATGGTAAATGGCTACTTGAAGTTTGGGAGAGTCGAGCTTGCCCAGAGGTTGTTTCTGGATATGCATGTAA AGGATGTTGCGGCGTGGAATGCTATGGTTCATGGGTATTTTGAGAATGGGAGAGTTGAAGAGGGTGTCAGGTTGTTTGAAGAAATGCCTGTTAGAGATGT CATTTCATGGACTTCGATGATTGGAGGGCTTGACCTAAATGGGAAGAGTGAAGAAGCCTTGTTTGTTTTTAAGAAGATGTTGCGTTCTGGTGTTGAGCCA ACTTGGAGCACGTTTGCTTGTGTGTTGTCAGCTTGTGCCAATGCAGTGGAGTTTAATTTGGGTGTTCAAGTTCATGGTCATGTTGTTAAGTTAGGATGTT TTTTTCATGAGTTTATATCAGTATCACTTATTACGTTTTATGCAAATTGCATGAAAATAGAGCATGCTCACAAGATTTTTAATGAGACACTGACTAAAAA TGTTGTAAAATGGACGGCTCTTTTGACGGCATATGTATGGAATAATAAGCATCAGGATGCATTGAGGGTTTTTGGTGACATGACTAAGATGGGTGCTCTT CCAAATCAATCTACTTTCTCTATTACTTTGAAGGCATGTTGTGGACTAGAGGCTCTTGATAAGGGTAAAGAGATCCACACTATGGCTATTAAACTAGGGT TGGAAACTGATGTCTTCGTTGGTAATTCTCTTGTAGTCATGTACACAGAGTGTGGAAATGTAAATTCTGCTGTTGCTGTCTTTAGGAACATTAATGAGAA GGATATTGTCTCGTGGAACTCAATTATTGTTGGAAGCGCACAGCATGGTTTTGGCCTGTGGGCGTTGATTTTCTTTAACCAAATGATACGTAGAGGGGTA GATCCAAATGAGATCACATTCACCGGTTTGCTTTCTGCTTGTAGCCGTTCTGGGATGTTACTGAAGGGGAGGTGCTTTTTTGAGTATATCAGTCGATATA AATCCAATGTATTGAGGCCTCAGCACTATGCTTGTATGGTGGACATCTTGGGAAGATGTGGGAAGTTGGATGAAGCAGAGGAGTTGGTTAGATATATGCC CGTGAAAGCGAATTCAATGATATGGCTTGCTTTGCTAAGTGCTTGTAGGGTGCATTCTAATTTGGAGGTTGCTGAAAGAGCTGCAAAACACATTCTTGAT CTAGAGCCAAATTGTAGTTCTGCCTATGTCTTGTTGTCTAATATATATGCATCTGCTGGTAGATGGGCTGATGTCTCTAGAATGAGAGTGAAGATGAAAC AGGGAGGACTTGTGAAACAACCAGGATCCAGTTGGGTAGTTTTGAGGGGAAAGAAACATGAGTTTCTTTCTGCAGACAGATCCCATCCTCTAAGTGAGAG AATATATGAAAAGCTGGACTGGTTGGGAAAAAAGTTGAAGGAATTTGGTTATGTTCCTGATCAAAAATTTGCTCTACATGATGTCGAGGATGAGCAGAAG GAAGAGATGTTGTCTTTTCACAGTGAGAGGCTTGCTATTGCGTTTGGGCTAGTTAGCACTGTGGAGGGTAGCACAATAACAGTCATGAAGAATCTTCGTG TATGTGGGGATTGTCACTCTGTTATTAAGCTTATGTCAAAGATTGTAGGACGCAAGATTGTTGTCAGAGATTCTGGCCGCTTTCACCACTTCAAGAATGG CATTTGTTCTTGCAGTGATTATTGGTAG
AA sequence Show only first row Show all	>Potri.001G354400.1 pacid=42790030 polypeptide=Potri.001G354400.1.p locus=Potri.001G354400 ID=Potri.001G354400.1.v4.1 annot-version=v4.1 MAHITRYTRTITLSYTTSLANHLKNQRLDQARLIFDKIPSPNLHLYTKMIAGYTRNDRLCDALKLFDRMSVRDVVSWNSMIKGCLDCGNLGMATRLFDEM PEKNVISWTTMVNGYLKFGRVELAQRLFLDMHVKDVAAWNAMVHGYFENGRVEEGVRLFEEMPVRDVISWTSMIGGLDLNGKSEEALFVFKKMLRSGVEP TWSTFACVLSACANAVEFNLGVQVHGHVVKLGCFFHEFISVSLITFYANCMKIEHAHKIFNETLTKNVVKWTALLTAYVWNNKHQDALRVFGDMTKMGAL PNQSTFSITLKACCGLEALDKGKEIHTMAIKLGLETDVFVGNSLVVMYTECGNVNSAVAVFRNINEKDIVSWNSIIVGSAQHGFGLWALIFFNQMIRRGV DPNEITFTGLLSACSRSGMLLKGRCFFEYISRYKSNVLRPQHYACMVDILGRCGKLDEAEELVRYMPVKANSMIWLALLSACRVHSNLEVAERAAKHILD LEPNCSSAYVLLSNIYASAGRWADVSRMRVKMKQGGLVKQPGSSWVVLRGKKHEFLSADRSHPLSERIYEKLDWLGKKLKEFGYVPDQKFALHDVEDEQK EEMLSFHSERLAIAFGLVSTVEGSTITVMKNLRVCGDCHSVIKLMSKIVGRKIVVRDSGRFHHFKNGICSCSDYW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G46460			Pentatricopeptide repeat (PPR)...		Potri.001G354400 [exp]	0	1
AT1G77170			Tetratricopeptide repeat (TPR)...		Potri.006G164100 [exp]	1.00	0.9358
AT3G20440		EMB2729, BE1	EMBRYO DEFECTIVE 2729, BRANCHI...		Potri.001G359200 [exp]	3.46	0.9261
AT4G16835			Tetratricopeptide repeat (TPR)...		Potri.003G081700 [exp]	3.46	0.9267
AT5G46920			Intron maturase, type II famil...		Potri.003G086801 [exp]	3.87	0.9203
					Potri.001G354300 [exp]	5.65	0.8922
AT2G24120		PDE319, SCA3	SCABRA 3, PIGMENT DEFECTIVE 31...		Potri.006G181100 [exp]	7.07	0.8990
AT4G12750			Homeodomain-like transcription...		Potri.014G173300 [exp]	7.41	0.8964
AT3G18020			Pentatricopeptide repeat (PPR)...		Potri.015G039300 [exp]	7.74	0.9234
AT1G16480			Tetratricopeptide repeat (TPR)...		Potri.001G100600 [exp]	7.74	0.8954
AT5G18390			Pentatricopeptide repeat (PPR)...		Potri.019G025700 [exp]	8.48	0.9123

Compare expression of checked genes

Potri.001G354400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.