Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29520 194 / 3e-64 AWPM-19-like family protein (.1) AT5G46530 189 / 2e-62 AWPM-19-like family protein (.1) AT5G18970 98 / 3e-26 AWPM-19-like family protein (.1) AT1G04560 83 / 3e-20 AWPM-19-like family protein (.1) AT4G39925 43 / 2e-06 AT hook motif DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G077800 [exp] 213 / 1e-71 AT5G46530 164 / 2e-52 AWPM-19-like family protein (.1) Potri.010G064200 [exp] 86 / 3e-21 AT1G04560 214 / 2e-71 AWPM-19-like family protein (.1) Potri.008G200000 [exp] 79 / 8e-19 AT5G18970 216 / 1e-72 AWPM-19-like family protein (.1) Potri.008G200300 [exp] 69 / 3e-15 AT5G18970 186 / 4e-61 AWPM-19-like family protein (.1) Potri.017G113000 [exp] 67 / 2e-14 AT1G04560 155 / 2e-48 AWPM-19-like family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025374 [exp] 218 / 7e-74 AT5G46530 241 / 4e-83 AWPM-19-like family protein (.1) Lus10015255 [exp] 214 / 2e-72 AT5G46530 240 / 2e-82 AWPM-19-like family protein (.1) Lus10004587 [exp] 212 / 3e-71 AT5G46530 240 / 2e-82 AWPM-19-like family protein (.1) Lus10011973 [exp] 211 / 6e-71 AT5G46530 240 / 2e-82 AWPM-19-like family protein (.1) Lus10023713 [exp] 83 / 2e-20 AT1G04560 254 / 2e-87 AWPM-19-like family protein (.1) Lus10014456 [exp] 81 / 1e-19 AT1G04560 254 / 2e-87 AWPM-19-like family protein (.1) Lus10001116 [exp] 76 / 8e-18 AT5G18970 216 / 1e-72 AWPM-19-like family protein (.1) Lus10021949 [exp] 66 / 5e-14 AT5G18970 226 / 1e-76 AWPM-19-like family protein (.1) Lus10041238 [exp] 66 / 6e-14 AT5G18970 225 / 2e-76 AWPM-19-like family protein (.1) Lus10033541 [exp] 43 / 2e-05 AT1G04560 91 / 2e-23 AWPM-19-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05512 [poplar] [flax] AWPM-19 AWPM-19-like family
Representative CDS sequence Show only first row Show all	>Potri.001G354500.1 pacid=42793342 polypeptide=Potri.001G354500.1.p locus=Potri.001G354500 ID=Potri.001G354500.1.v4.1 annot-version=v4.1 ATGGTACTCTCGCAGCAGATAAAACTTGTTGCCTTGCTACTTCTGGTCTTAAATTTCTGCATGTATGTCATTGTTTTGGGGATTGGCGGTTGGGCTATGA ATAGAGCCATTGATCATGGTTTCATCATTGGACCTGGGTTTGACCTGCCAGCACATTTCTCACCTATTTACTTCCCTATGGGAAATGCTGCCACTGGATT CTTCGTGATGTTTGCTTTGATCGCCGGAGTTGTTGGTGTTGCCTCAGCAATTGTTGGTCTTAATCACATTCGGACTTGGACCGGCGACAGCTTGCCATCT GCAGCCTCCGTTGCTGCCGTTTCTTGGACTCTCACTCTTCTAGCCATGGGCTTCGCCTGGAAAGAAATTGAGCTCTCTATCAGGAACGCCCGTCTGAGAA CCATGGAGGCATTTCTGATAATCCTTTCTGCTACACAGCTTCTATACATAGCAGCCATCCACGGTGCCTCGTCATTTAGGAGACCTTAA
AA sequence Show only first row Show all	>Potri.001G354500.1 pacid=42793342 polypeptide=Potri.001G354500.1.p locus=Potri.001G354500 ID=Potri.001G354500.1.v4.1 annot-version=v4.1 MVLSQQIKLVALLLLVLNFCMYVIVLGIGGWAMNRAIDHGFIIGPGFDLPAHFSPIYFPMGNAATGFFVMFALIAGVVGVASAIVGLNHIRTWTGDSLPS AASVAAVSWTLTLLAMGFAWKEIELSIRNARLRTMEAFLIILSATQLLYIAAIHGASSFRRP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G29520			AWPM-19-like family protein (....		Potri.001G354500 [exp]	0	1
AT1G53708		RTFL9	ROTUNDIFOLIA like 9 (.1)		Potri.001G161200 [exp]	2.44	0.9200
AT4G01410			Late embryogenesis abundant (L...		Potri.014G106100 [exp]	4.47	0.9081
AT1G53708		RTFL9	ROTUNDIFOLIA like 9 (.1)		Potri.003G073900 [exp]	5.47	0.9187
AT3G02720			Class I glutamine amidotransfe...		Potri.004G076000 [exp]	6.70	0.9115
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Potri.009G114600 [exp]	7.34	0.9114
AT5G24800	bZIP	BZO2H2, ATBZIP9	BASIC LEUCINE ZIPPER O2 HOMOLO...		Potri.006G277800 [exp]	8.66	0.9020
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Potri.010G165300 [exp]	8.66	0.9139
AT3G02720			Class I glutamine amidotransfe...		Potri.004G076200 [exp]	9.79	0.9015
AT3G02720			Class I glutamine amidotransfe...		Potri.004G075900 [exp]	10.81	0.9036
AT5G16770	MYB	ATMYB9	myb domain protein 9 (.1.2)		Potri.019G050900 [exp]	12.48	0.9135	MYB101.1

Compare expression of checked genes

Potri.001G354500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.