Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29530 55 / 2e-08 unknown protein AT4G18070 45 / 2e-05 unknown protein AT1G06540 44 / 2e-05 unknown protein AT2G34310 45 / 3e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G077700 [exp] 403 / 2e-140 AT1G29530 50 / 1e-06 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004585 [exp] 99 / 4e-23 AT1G29530 54 / 3e-08 unknown protein Lus10011974 [exp] 96 / 7e-22 AT1G29530 48 / 2e-06 unknown protein Lus10015254 [exp] 65 / 9e-12 AT1G29530 50 / 3e-07 unknown protein Lus10025373 [exp] 58 / 1e-09 AT1G29530 51 / 1e-07 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G354600.7 pacid=42788436 polypeptide=Potri.001G354600.7.p locus=Potri.001G354600 ID=Potri.001G354600.7.v4.1 annot-version=v4.1 ATGCCATCCGGTGCTAAGAAGAGGAAAGCAGCCAAGAAAAGGAGGGAACAGGAGGCCAACAACAACAACAACTCTTCAATCAGTACCAACAATCCTCAAG GAAATGATGACCCAAAAAGCCATGATGAAAGAGAGAGTGATGGTGGTGAGGTTGGTACCCCTGTATCACAGGACCAACACAACCACCAGCATCCATTTAA TGAGGGGAATGGAGAATCTGAGAAGGGAGGCCCGTTGCCTTCTGACTCATTAGCCGACCAGAACAAGCCCATGGAGGTAGTCACTGGGGATGCAGAAGGA AGCCTAAAAGTTGAATCAGAGGACAACATTGCTGTAAATATTGAGAGAGAAGTGAACTCTAAGCAAAATGTGGAGAGTAAAAATGTTTTTATCGAGCATG TTGATTCTTCTAAGGAATCTCATGATGAAGATGACAGGAGTTCTAGCAGTAGTAGTTTCAGCAATGAGTCTCAAGCTTTCGAGAAGAAATCGAAGGAAGC CAATGATGAAGAAAAGGAAAATGGTTCTTTTTCTGAAGAGGTGAAGCAGATCCCCGAAAATGAGAAACCAGTCAAGGAAGCTGATAGTAATTCAGTTTTG GAAACTGCTTCTGCTGATTTGGTTAATCCTGCGGTGCCTATATCTGAGACAGCAAAAGTTGTTATTGAGATTGCTCAAGTTGAAAATCCAGAGGTTCTGG AAGTGGTTGAATCTGGTTTTGAGGATGATGAGGACAAATTGTTGCCTGTATCCAATGAGATTGCTGAAGTTTCACCAGCTATTGTAGTGCCAAAGAAAAA TGAAGATAAAGTTTTTCCTATTTCAGATGAGAATGTTAGGGCATCTGCAAATGTGGTTGCTTCTTCTGCATATGGAAATGTAGGGAAAACATTGGTATCA TCAGTCAGTCATTCTGCTGAAACTGGTAATGGTGAAGAAAAAACCAAATACACTGATGCTCGTCAAAGTACTGAAAATAAGCCTCTTCTTGCTTGTGGTC CACGAGTAGCAGAAAGAACATTGTGGATGAGTTGCTGTGGTATATTTGATGTTCTTACAGGCTCCAAATAG
AA sequence Show only first row Show all	>Potri.001G354600.7 pacid=42788436 polypeptide=Potri.001G354600.7.p locus=Potri.001G354600 ID=Potri.001G354600.7.v4.1 annot-version=v4.1 MPSGAKKRKAAKKRREQEANNNNNSSISTNNPQGNDDPKSHDERESDGGEVGTPVSQDQHNHQHPFNEGNGESEKGGPLPSDSLADQNKPMEVVTGDAEG SLKVESEDNIAVNIEREVNSKQNVESKNVFIEHVDSSKESHDEDDRSSSSSSFSNESQAFEKKSKEANDEEKENGSFSEEVKQIPENEKPVKEADSNSVL ETASADLVNPAVPISETAKVVIEIAQVENPEVLEVVESGFEDDEDKLLPVSNEIAEVSPAIVVPKKNEDKVFPISDENVRASANVVASSAYGNVGKTLVS SVSHSAETGNGEEKTKYTDARQSTENKPLLACGPRVAERTLWMSCCGIFDVLTGSK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G29530			unknown protein		Potri.001G354600 [exp]	0	1
AT1G74910			ADP-glucose pyrophosphorylase ...		Potri.015G070500 [exp]	6.92	0.8189
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.009G012200 [exp]	7.28	0.8830	FLA14.12
					Potri.003G083000 [exp]	12.12	0.8776
AT1G49960			Xanthine/uracil permease famil...		Potri.009G086800 [exp]	14.69	0.8744
AT4G36790			Major facilitator superfamily ...		Potri.007G030800 [exp]	15.42	0.8712
AT1G33720		CYP76C6	"cytochrome P450, family 76, s...		Potri.001G109300 [exp]	17.02	0.8759
AT5G07010		ATST2A	ARABIDOPSIS THALIANA SULFOTRAN...		Potri.001G036500 [exp]	20.49	0.6927
					Potri.002G193400 [exp]	20.61	0.8409
AT3G47690		ATEB1A, ATEB1H2	ATEB1-HOMOLOG2, ARABIDOPSIS TH...		Potri.012G069400 [exp]	21.54	0.8655	Pt-ATEB1.3
AT3G18380		SHH2	SAWADEE homeodomain homolog 2,...		Potri.001G373300 [exp]	23.47	0.8378

Compare expression of checked genes

Potri.001G354600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.