Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18060 537 / 0 SH3 domain-containing protein (.1) AT4G34660 323 / 3e-109 SH3 domain-containing protein (.1.2.3) AT1G31440 191 / 9e-57 SH3 domain-containing protein (.1) AT4G39020 81 / 6e-18 SH3 domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G077500 [exp] 592 / 0 AT4G18060 514 / 0.0 SH3 domain-containing protein (.1) Potri.009G123200 [exp] 343 / 9e-117 AT4G34660 566 / 0.0 SH3 domain-containing protein (.1.2.3) Potri.004G161300 [exp] 337 / 2e-114 AT4G34660 515 / 0.0 SH3 domain-containing protein (.1.2.3) Potri.001G128800 [exp] 296 / 2e-98 AT4G34660 362 / 6e-124 SH3 domain-containing protein (.1.2.3) Potri.003G105200 [exp] 282 / 3e-93 AT4G34660 325 / 1e-109 SH3 domain-containing protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004584 [exp] 547 / 0 AT4G18060 549 / 0.0 SH3 domain-containing protein (.1) Lus10011975 [exp] 543 / 0 AT4G18060 548 / 0.0 SH3 domain-containing protein (.1) Lus10015253 [exp] 534 / 0 AT4G18060 540 / 0.0 SH3 domain-containing protein (.1) Lus10028783 [exp] 350 / 1e-119 AT4G34660 596 / 0.0 SH3 domain-containing protein (.1.2.3) Lus10017501 [exp] 347 / 2e-118 AT4G34660 598 / 0.0 SH3 domain-containing protein (.1.2.3) Lus10017500 [exp] 330 / 7e-112 AT4G34660 569 / 0.0 SH3 domain-containing protein (.1.2.3) Lus10028784 [exp] 327 / 2e-110 AT4G34660 563 / 0.0 SH3 domain-containing protein (.1.2.3) Lus10033292 [exp] 264 / 1e-85 AT1G31440 432 / 3e-150 SH3 domain-containing protein (.1) Lus10034755 [exp] 238 / 1e-74 AT1G31440 397 / 1e-135 SH3 domain-containing protein (.1) Lus10028785 [exp] 210 / 7e-67 AT4G34660 338 / 2e-117 SH3 domain-containing protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0010 [poplar] [flax] SH3 PF14604 [poplar] [flax] SH3_9 Variant SH3 domain
Representative CDS sequence Show only first row Show all	>Potri.001G354700.3 pacid=42792814 polypeptide=Potri.001G354700.3.p locus=Potri.001G354700 ID=Potri.001G354700.3.v4.1 annot-version=v4.1 ATGGACGCATTGAGGAAACAGGCCAGCAAGTTGAGGGAACAAGTAGCCAAGCAACAACAAGCTGTCATAAAGCAGTTCAGTGGCACAGGTTATGAAAGCT CAGATGTAATGGTAATTGATGAAGTCGAGATGCACAGACATCAGCAGCTAGAGAAGCTGTACAGGTCGACACGTTCAGGGAAGGATTTTCAGAAGGATGT TGTTAAAGCAGCGGAAGCCTTCACCACCATAGGGTACCGACATATAGAGGCAGGAACCAAGTTGTCAGAGGATTGCTGCAGATATGGAACCGAGAACATC AATGAGAACATGTTAGCTAAGGCTGCAGCTATATATGGTGATGCTCGTAAACATGTGGAACAGGAGCAGGATGACTTGAATCGCCTGTTATCTTCACAGG TTTTGGAACCCTTGAGAGCAATGATTAATGGCGCTCCTTTAGAAGATGCCCGCCATCTTGCTCAACGATATAGCCGGATGAGACAGGAAGCAGAGACCCA GGCAGTTGAGGTTTCCAGAAGACAAGCACGAGTACGGGAATCTCCAATTCCTGAAAATGTTTCAAAGCTGCATGCAGCAGAAGCCAAGATGCAAGAAATA AAGGCTAACATGGCAGTTCTTGGTAAAGAAGCTGCAGCTGCATTAGCTGCTGTTGAAGCACAACAGCACAGATTGACTTTCCAACGGCTTGTTGCCATGG TTGAAGGAGAAAAAAATTATCATCTTAGAATTGCTGCTATTCTTAGTGAGGTCGAAGCTGAGATGGTCTCAGAGAAACAGCAAAAAGAGTCTGCTCCTCC AGTGATTCTGCCTCCTGTTATTCCATCAGAAAATGGCTTGGAGAAAAGCACATACTTTTTGGCTGAAGCAACACATCCTTTTTTCGCAGAGACAGAGAAG GAGCTGAGCTTGGCTGTGGGTGACTACATTGTTGTGAGAAAGGTAAGTCCAACTGGGTGGTCAGAAGGAGAATGTAGAGGTAAAGCTGGGTGGTTCCCAT CAGCATACGTGGAGAAGCGCCAGAGGATTCCCACCAGTTCGTCTGCTTAA
AA sequence Show only first row Show all	>Potri.001G354700.3 pacid=42792814 polypeptide=Potri.001G354700.3.p locus=Potri.001G354700 ID=Potri.001G354700.3.v4.1 annot-version=v4.1 MDALRKQASKLREQVAKQQQAVIKQFSGTGYESSDVMVIDEVEMHRHQQLEKLYRSTRSGKDFQKDVVKAAEAFTTIGYRHIEAGTKLSEDCCRYGTENI NENMLAKAAAIYGDARKHVEQEQDDLNRLLSSQVLEPLRAMINGAPLEDARHLAQRYSRMRQEAETQAVEVSRRQARVRESPIPENVSKLHAAEAKMQEI KANMAVLGKEAAAALAAVEAQQHRLTFQRLVAMVEGEKNYHLRIAAILSEVEAEMVSEKQQKESAPPVILPPVIPSENGLEKSTYFLAEATHPFFAETEK ELSLAVGDYIVVRKVSPTGWSEGECRGKAGWFPSAYVEKRQRIPTSSSA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G18060			SH3 domain-containing protein ...		Potri.001G354700 [exp]	0	1
AT5G57330			Galactose mutarotase-like supe...		Potri.001G037700 [exp]	6.85	0.9111
AT3G06720		IMPA1, IMPA-1, ...	importin alpha isoform 1 (.1.2...		Potri.014G124200 [exp]	8.24	0.8926
AT1G09160			Protein phosphatase 2C family ...		Potri.005G021200 [exp]	8.48	0.8896
AT1G12840		ATVHA-C, DET3	DE-ETIOLATED 3, ARABIDOPSIS TH...		Potri.017G061100 [exp]	9.74	0.8917
AT5G45750		AtRABA1c	RAB GTPase homolog A1C (.1)		Potri.011G070300 [exp]	11.00	0.8863
AT1G06660		JASON	JASON, unknown protein		Potri.002G057000 [exp]	12.84	0.8783
AT3G09740		ATSYP71, SYP71	syntaxin of plants 71 (.1)		Potri.016G088200 [exp]	13.78	0.8973	SYP71.2
AT1G10630		ATARFA1F	ADP-ribosylation factor A1F (....		Potri.002G191400 [exp]	15.29	0.8940	ARF1.2
AT5G35620		eIFiso4E, EIF(I...	LOSS OF SUSCEPTIBILITY TO POTY...		Potri.010G066700 [exp]	18.00	0.8592
AT1G08200		AXS2	UDP-D-apiose/UDP-D-xylose synt...		Potri.004G189900 [exp]	18.38	0.8179	AXS1.2

Compare expression of checked genes

Potri.001G354700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.