Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18050 1723 / 0 ABCB9, PGP9 ATP-binding cassette B9, P-glycoprotein 9 (.1) AT5G46540 1649 / 0 ABCB7, PGP7 ATP-binding cassette B7, P-glycoprotein 7 (.1) AT2G47000 1600 / 0 PGP4 ,MDR4, ABCB4, ATPGP4 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) AT1G02520 1582 / 0 MDR8, ABCB11, PGP11 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) AT3G62150 1565 / 0 ABCB21, PGP21 ATP-binding cassette B21, P-glycoprotein 21 (.1) AT1G02530 1545 / 0 ABCB12, PGP12 ATP-binding cassette B12, P-glycoprotein 12 (.1) AT4G01820 1499 / 0 ABCB3, MDR3, PGP3 ATP-binding cassette B3, P-glycoprotein 3 (.1) AT3G28860 1035 / 0 ABCB19, ATMDR11, ATMDR1, PGP19, MDR11, MDR1, ATPGP19, ATABCB19 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) AT2G36910 1013 / 0 ATMDR1, ATPGP1, PGP1, ABCB1 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) AT4G25960 985 / 0 ABCB2, PGP2 ATP-binding cassette B2, P-glycoprotein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G113500 [exp] 1641 / 0 AT3G62150 1879 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.002G187500 [exp] 1624 / 0 AT3G62150 1860 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.014G113000 [exp] 1617 / 0 AT3G62150 1767 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.014G113200 [exp] 1605 / 0 AT3G62150 1871 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.014G113100 [exp] 1597 / 0 AT1G02520 1773 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Potri.002G187400 [exp] 1597 / 0 AT3G62150 1702 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.010G003000 [exp] 1545 / 0 AT2G47000 1585 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Potri.017G081100 [exp] 1042 / 0 AT3G28860 2107 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Potri.003G094400 [exp] 1036 / 0 AT4G25960 2000 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004583 [exp] 1658 / 0 AT4G18050 1660 / 0.0 ATP-binding cassette B9, P-glycoprotein 9 (.1) Lus10009988 [exp] 1635 / 0 AT3G62150 1896 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10038049 [exp] 1635 / 0 AT3G62150 1891 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10010068 [exp] 1591 / 0 AT3G62150 1820 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10010067 [exp] 1554 / 0 AT1G02520 1748 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10009989 [exp] 1547 / 0 AT2G47000 1754 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Lus10038050 [exp] 1488 / 0 AT2G47000 1697 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Lus10010074 [exp] 1416 / 0 AT1G02520 1591 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10010012 [exp] 1390 / 0 AT1G02520 1526 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10030674 [exp] 1028 / 0 AT3G28860 2271 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter CL0241 [poplar] [flax] ABC_membrane PF00664 [poplar] [flax] ABC_membrane ABC transporter transmembrane region
Representative CDS sequence Show only first row Show all	>Potri.001G354900.1 pacid=42791903 polypeptide=Potri.001G354900.1.p locus=Potri.001G354900 ID=Potri.001G354900.1.v4.1 annot-version=v4.1 ATGAGGGAAGATACAGAAGGTGCATCAACAAACAGTATTGCTAATGGCCAGAAAACCACGAATGGAGAAGATCAGAAGGTTGCATTCCACAAGCTGTTCA CGTTTGCAGATAGGCTTGACGTGGTTTTGATGATCGTTGGCACGTTAAGTGCCATTGCTAATGGCCTTGCTCAGCCTCTGATGACACTCATTTTTGGCCA GCTTATAAACTCCTTCGGCTCCAGTGATCGTTCAAACGTTGTTAAGGAAGTTTCCAAGGTAGCACTAAATTTTGTGTACTTGGCAATTGGATCGGGCATC GCTTCTCTTTTACAGGTGTCCAGTTGGATGGTTACTGGAGAAAGACAGTCTACCCGCATTCGAAGTCTGTACTTGAAAACAATACTGAGACAGGACATTG GCTTCTTCGACTCTGAAACATCCACTGGTGAAGTCATTGGAAGAATGTCTGGTGACACTATTCTCATTCAAGATGCCATGGGTGAAAAGGTCGGGAAGTT CATACAACTACTAGCAACATTTTTCGGTGGCTTTGCGATTGGCTTCATAAAAGGCTGGCTTCTTGCATTAGTTCTGCTTTCCAGTATTCCTCCTCTTGTA ATTGCTGGTGGAGTCATGGCTTTGATCATGACAAAAATGTCAAGCCGTGGACAGGTTGCTTATGCAGAGGCTGGAAACATTGTAGAGCAAACAGTTGGAG CCATACGAACAGTTGCATCTTTCACGGGGGAGAAGCATGCAATTGAAAAATATAACAGTAAGCTGAAAATTGCGTATAACTCTGCCGCCCAACAAGGGTT GGCCTCAGGCTTGGGTCTCGGTACAATGTTGTTCATTGTATTTGGCACTTATGCACTTGCCATATGGTATGGATCCAAATTGATCGTCGAGAAAGGTTAT AACGGTGGACAAGTTATGACTGTAATTATATCAATTATGACTGGAGGAATGTCATTGGGTCAGACTTCTCCATGTTTGAATGCTTTTGCATCAGGGCAAG CTGCGGCATATAAGATGTTTGAGACCATTGAACGGAAGCCAAAAATCGATCCCTATGACACTAGTGGGATGGTAGTGGAAGATCTGGATGGAGAAATTGA ACTCAGAGATGTATATTTCAGATACCCAGCTAGGCCTGAGGTTCAAATCTTCTCTGGATTTTCACTGCAAGTTCCAAGTGGCACAACTACAGCTTTGGTT GGGCAAAGTGGAAGTGGAAAGTCAACTGTTATTAGCCTTGTTGAGAGATTTTATGATCCTGATTCAGGTGAAGTACTTATCGATGGTGTTGACTTGAAGA AGCTGAAGCTTAGCTGGATAAGGGAGAAGATTGGACTAGTTAGCCAGGAACCTATTTTATTTGCAACCAGCATAAAGGAAAATATAGCTTATGGGAAAGA AAATGCAACTGATCAGGAGATTAGAACAGCAATCCAACTAGCCAATGCTGCAAAATTCATTGACAAAATGCCTGAGGGACTTGACACCATGGTTGGTGAG CATGGTACTCAGCTGTCTGGTGGCCAAAAGCAAAGAATTGCAATTGCAAGGGCCATATTGAAGAATCCAAAGATTCTTCTTCTTGATGAAGCAACAAGTG CACTTGATGCGGAGTCTGAACGCATTGTCCAAGATGCGTTGGTGAAAATTATGTGCAACCGAACAACTTTGGTTGTTGCACATCGTTTGACAACTATCAG GAATGCGGACATGATTGCTGTGGTTCATTTGGGAAAAATTGTAGAGAAAGGAAGTCATGAGGAGCTGACAAAAGATCCGGAGGGGGCTTACTCCCAGTTA ATTCGCCTCCAAGGAGGAGCTATGGATTCTGAAGAATCTCAGGACATTGATGCAGATATGTCGAGATCTAGTTTGGACAGAGACAGGTCCATTTCCAGTC CTAGGAGCCAGAAACATTCTGTTCAGGGATCCATAAGTAGAGGTTCATCAGGAAGTCGGCGCTCCTTCACACTCAACACTGTTGGCTTTGGCATGCCCGG TCCTACCAGTGTTCATGATGATGAATTCGAACAGAACAATGAAAGAAATGTAAAGCCTAAAGAAGTTTCTATTAAACGACTTGCCTACCTCAACAAGCCC GAGCTTCCTGTTTTATTTCTCGGCACCGTTGCTGCAGTTATACATGGTGTGATTTTCCCAGTGTTTGGCCTTCTACTATCAAAAGCCATTAACATGTTTT ACGAACCTCCAAAGGAGATTCGAAAAGATTCCAAGTTCTGGGCAGTGCTGTATTTGGGATTGGGTTTTATTACCTTTGCAGCCCTTCCACTGCAATATTA CCTCTTTGGAATTGCTGGTGGTAAGTTGATTGAACGAATTCGTTCCAAAACATTTGAAAAAGTAGTGCACCAAGAGATTAGCTGGTTTGATGACCCTACA AATTCAAGTGGTGCAATTGGTGCAAGGTTGTCAACGGATGCTTCTACAGTTAGGAGGCTTGTTGGTGATTCCCTGTCCTTAATTGTCCAAAATATATCAA CAATCTTGTCAGCTTTGGTTATAGCATTTTCAGCCAACTGGATGTTGACCTTGATAATTATTGCTATATCTCCCTTGCTATTTATCCAAGGGTACATGCA AGCAAAGTTTATGAAGGGGTTCAGTGCAGATTCAAAGATGATGTATGAACAAGCTAGTCAAGTGGCTAATGATGCGGTTGGCAGCATTAGAACTGTTGCT TCTTTTTGTGCCGAGAAGAAGGTAATGGAGTTGTATCAAAAGAAATGTGAAGGTCCCACGAAGCAAGGTGTTCGGCTTGGGTTTGTTAGTGGCATTGGTT ATGGCTTATCATTCTTTATACTCTATTGCACCAATGCATTTTGTTTCTATATTGGAGCTATCTTCGTCCAAAATGGGAAAACAACATTTGCAGATGTTTT CAGGGTTTTCTTTGCGTTGACTATTGGAGCACTGGGGGTTTCCCAATCTAGTGGCCTGGCTCCAGACACTGCCAAGGCCAAAGATTCAGCAGCTTCAATA TTTGCAATTCTTGATAGAAAGCCCAAAATTGACTCAAGTAGAGATGAAGGGCTCACTCTACCACATGTTAATGGTGATATTGAGATTGAACATGTTAGCT TTAAATACCCGATGAGACCACATGTTCAAATCTTCAGAGACATGTCCCTTAGTATTCCCTCTGGAAAGACTGTTGCTCTAGTTGGGGAGAGTGGTAGCGG GAAGTCAACAGTTATCAGCCTCATAGAGAGGTTTTATGATCCTGATTCCGGTCACGTATATTTGGACAGTGTGGAAATCAAGAAGTTCAAACTAAACTGG TTGAGACAACAAATGGGTTTGGTCAGCCAAGAACCAATACTGTTCAATGAAACTATCCGCGCAAATATAGCTTATGGAAAGCATGGAGAGATTGCCGAGG AAGAGATAATCGAAGCTACAAGAGCATCAAATGCGCACAACTTCATTAGCACACTACCACAAGGCTATGACACCAAAGTAGGTGAACGCGGGATTCAACT GTCGGGCGGACAGAAGCAGAGAATAGCCATCGCCAGGGCAATCCTAAAGAATCCGAAAATTCTCTTACTCGACGAGGCAACGAGTGCGCTGGATGCAGAG TCAGAGCGTATAGTACAAGAAGCATTAGATAGAGTTATGGTGAACAGAACAACCGTTGTTGTTGCTCATCGCCTTGCCACAATTAAAGGTGCTGATGTCA TTGCTGTAGTGAAGAATGGTGCGATTGCCGAGAAGGGAAAGCATGATGTGCTCATGAAGATCACTGACGGGGCTTATGCATCCTTGGTCGCCCTTCATAT GAGTGCAACTTGA
AA sequence Show only first row Show all	>Potri.001G354900.1 pacid=42791903 polypeptide=Potri.001G354900.1.p locus=Potri.001G354900 ID=Potri.001G354900.1.v4.1 annot-version=v4.1 MREDTEGASTNSIANGQKTTNGEDQKVAFHKLFTFADRLDVVLMIVGTLSAIANGLAQPLMTLIFGQLINSFGSSDRSNVVKEVSKVALNFVYLAIGSGI ASLLQVSSWMVTGERQSTRIRSLYLKTILRQDIGFFDSETSTGEVIGRMSGDTILIQDAMGEKVGKFIQLLATFFGGFAIGFIKGWLLALVLLSSIPPLV IAGGVMALIMTKMSSRGQVAYAEAGNIVEQTVGAIRTVASFTGEKHAIEKYNSKLKIAYNSAAQQGLASGLGLGTMLFIVFGTYALAIWYGSKLIVEKGY NGGQVMTVIISIMTGGMSLGQTSPCLNAFASGQAAAYKMFETIERKPKIDPYDTSGMVVEDLDGEIELRDVYFRYPARPEVQIFSGFSLQVPSGTTTALV GQSGSGKSTVISLVERFYDPDSGEVLIDGVDLKKLKLSWIREKIGLVSQEPILFATSIKENIAYGKENATDQEIRTAIQLANAAKFIDKMPEGLDTMVGE HGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMCNRTTLVVAHRLTTIRNADMIAVVHLGKIVEKGSHEELTKDPEGAYSQL IRLQGGAMDSEESQDIDADMSRSSLDRDRSISSPRSQKHSVQGSISRGSSGSRRSFTLNTVGFGMPGPTSVHDDEFEQNNERNVKPKEVSIKRLAYLNKP ELPVLFLGTVAAVIHGVIFPVFGLLLSKAINMFYEPPKEIRKDSKFWAVLYLGLGFITFAALPLQYYLFGIAGGKLIERIRSKTFEKVVHQEISWFDDPT NSSGAIGARLSTDASTVRRLVGDSLSLIVQNISTILSALVIAFSANWMLTLIIIAISPLLFIQGYMQAKFMKGFSADSKMMYEQASQVANDAVGSIRTVA SFCAEKKVMELYQKKCEGPTKQGVRLGFVSGIGYGLSFFILYCTNAFCFYIGAIFVQNGKTTFADVFRVFFALTIGALGVSQSSGLAPDTAKAKDSAASI FAILDRKPKIDSSRDEGLTLPHVNGDIEIEHVSFKYPMRPHVQIFRDMSLSIPSGKTVALVGESGSGKSTVISLIERFYDPDSGHVYLDSVEIKKFKLNW LRQQMGLVSQEPILFNETIRANIAYGKHGEIAEEEIIEATRASNAHNFISTLPQGYDTKVGERGIQLSGGQKQRIAIARAILKNPKILLLDEATSALDAE SERIVQEALDRVMVNRTTVVVAHRLATIKGADVIAVVKNGAIAEKGKHDVLMKITDGAYASLVALHMSAT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G18050		ABCB9, PGP9	ATP-binding cassette B9, P-gly...		Potri.001G354900 [exp]	0	1
AT5G66310			ATP binding microtubule motor ...		Potri.007G014800 [exp]	3.16	0.9364
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Potri.008G069900 [exp]	3.74	0.9371
AT1G06470			Nucleotide/sugar transporter f...		Potri.006G278700 [exp]	3.87	0.9300
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Potri.015G060100 [exp]	11.40	0.9138
AT1G16860			Ubiquitin-specific protease fa...		Potri.010G252400 [exp]	11.48	0.9225
AT2G22125		POM2, CSI1	POM-POM 2, cellulose synthase-...		Potri.005G080100 [exp]	11.83	0.8963
AT1G12460			Leucine-rich repeat protein ki...		Potri.001G114500 [exp]	12.96	0.8850
AT5G17420		ATCESA7, MUR10,...	MURUS 10, IRREGULAR XYLEM 3, C...		Potri.018G103900 [exp]	13.41	0.9216
AT1G79640			Protein kinase superfamily pro...		Potri.001G037900 [exp]	15.00	0.8995
AT2G03480		QUL2	QUASIMODO2 LIKE 2 (.1.2)		Potri.008G094800 [exp]	15.55	0.9172

Compare expression of checked genes

Potri.001G354900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.