Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17020 438 / 2e-154 ATSRG1, SRG1 senescence-related gene 1 (.1) AT1G17010 426 / 1e-149 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G25300 410 / 2e-143 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G78550 391 / 6e-136 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G25310 391 / 8e-136 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G21420 293 / 3e-97 LBO1 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G38240 265 / 2e-86 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G05600 249 / 5e-80 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G11180 243 / 4e-77 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT3G55970 239 / 5e-76 ATJRG21 jasmonate-regulated gene 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G381700 [exp] 483 / 5e-172 AT1G17020 436 / 2e-153 senescence-related gene 1 (.1) Potri.001G382400 [exp] 479 / 1e-170 AT1G17020 446 / 1e-157 senescence-related gene 1 (.1) Potri.009G025900 [exp] 428 / 3e-150 AT4G25300 410 / 3e-143 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.001G355200 [exp] 366 / 6e-126 AT1G17020 329 / 3e-111 senescence-related gene 1 (.1) Potri.009G022800 [exp] 306 / 2e-102 AT1G17020 302 / 6e-101 senescence-related gene 1 (.1) Potri.010G023600 [exp] 303 / 3e-101 AT3G21420 511 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G201000 [exp] 275 / 3e-90 AT3G21420 290 / 5e-96 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G200900 [exp] 269 / 9e-88 AT3G21420 288 / 4e-95 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G101200 [exp] 256 / 6e-83 AT5G05600 474 / 3e-168 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011980 [exp] 458 / 2e-162 AT1G17020 382 / 1e-132 senescence-related gene 1 (.1) Lus10011979 [exp] 454 / 1e-160 AT1G17020 374 / 4e-129 senescence-related gene 1 (.1) Lus10011981 [exp] 454 / 2e-160 AT1G17020 375 / 2e-129 senescence-related gene 1 (.1) Lus10026173 [exp] 446 / 7e-157 AT1G17020 443 / 5e-156 senescence-related gene 1 (.1) Lus10015252 [exp] 423 / 2e-148 AT1G17020 375 / 1e-129 senescence-related gene 1 (.1) Lus10022292 [exp] 413 / 2e-144 AT1G17020 449 / 5e-159 senescence-related gene 1 (.1) Lus10011985 [exp] 390 / 3e-135 AT1G17020 367 / 4e-126 senescence-related gene 1 (.1) Lus10032574 [exp] 386 / 1e-133 AT4G25300 419 / 2e-146 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10030995 [exp] 333 / 7e-113 AT1G17020 339 / 2e-115 senescence-related gene 1 (.1) Lus10030934 [exp] 320 / 6e-108 AT1G17020 337 / 2e-114 senescence-related gene 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF03171 [poplar] [flax] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily CL0029 [poplar] [flax] Cupin PF14226 [poplar] [flax] DIOX_N non-haem dioxygenase in morphine synthesis N-terminal
Representative CDS sequence Show only first row Show all	>Potri.001G355100.1 pacid=42793485 polypeptide=Potri.001G355100.1.p locus=Potri.001G355100 ID=Potri.001G355100.1.v4.1 annot-version=v4.1 ATGGAACCAGCAACACTTGGGAAGTCTCTCTTGGTGCCCTGCGTTCAGGAGCTGGCAAAGGAGTCACCGGCCACTGTCCCAACAAGATACTTGCGTCTTG ATCAAGACCCTCCAATAATAAACAACAATGAGGTGGCTTCCTTGCCCCAAATCCCAGTAATTGACATGCGAAGATTAGTTTCTGAAGAACAAATGGATTT AGAGCTGGATAAAATGGACCGTGCATGCAAGGAATGGGGTTTCTTCCAGCTGATAAATCATGGAGTGGATGATTCATTGGTTAACAAAGTGAAGGAAGGG ATTCAAGAGCTGTTCAACCTACCAATGGAGGAGAAGAGCAAGTATTGGCAAAGACCAGAAGAAATGGAGGGATTTGGACAAGCTTTTGTTGTGTCTGAGG AGCAGAAGCTTGATTGGGGAGATATTTTCTACATGATCACTCTTCCAAAGCATGCGAGGAAACCCCATTTATTCCCCATGCTTCCTCAACCACTCAGAGA TACTTTGGAAGCATACTCGGCGGAATTAAAAAATCTTGCCATGAAAATCCTCTATCTCATGGCTAAAGCTCTAAGAATGAAACCTGACGAGATAAAAGAC ATGTTCGAAGAAGGATCTCAGATGATGAGGATGAACTATTACCCACCATGCCCACAACCAGAGCTTGTCATGGGCCTGAACTCTCACTCTGATGCTATTG GCCTCACAATCCTCCTCCAAGTCAGTGAGGTGGAAGGGTTACAGATAAGGAAATCTGGGAAGTGGATTCCTGTTCAACCACTTCCCAATGCGTTCGTGAT CAACATTGGAGACATGTTGGAGATTGTGACTAATGGGATTTACCGTAGCACTGAGCATCGAGCAACTGTTAACTCAGAGAAAGAGCGAATTTCTGTGGCC ACCTTTTACAGCCTCAATCTGGATGGAGAACTGGGTCCTGCGCCAAGCCTTGTTACTCCAGAGACTCCAGCAGCATATAGGAGAATGATAGTGGCGGATT TCCTGAAAGGATTTTTATCACGTAAACTCGTTGGAAAATCATATGTTGATGTCATGAGGATTCAAAATGGAGGTGACAAAGACAATTGA
AA sequence Show only first row Show all	>Potri.001G355100.1 pacid=42793485 polypeptide=Potri.001G355100.1.p locus=Potri.001G355100 ID=Potri.001G355100.1.v4.1 annot-version=v4.1 MEPATLGKSLLVPCVQELAKESPATVPTRYLRLDQDPPIINNNEVASLPQIPVIDMRRLVSEEQMDLELDKMDRACKEWGFFQLINHGVDDSLVNKVKEG IQELFNLPMEEKSKYWQRPEEMEGFGQAFVVSEEQKLDWGDIFYMITLPKHARKPHLFPMLPQPLRDTLEAYSAELKNLAMKILYLMAKALRMKPDEIKD MFEEGSQMMRMNYYPPCPQPELVMGLNSHSDAIGLTILLQVSEVEGLQIRKSGKWIPVQPLPNAFVINIGDMLEIVTNGIYRSTEHRATVNSEKERISVA TFYSLNLDGELGPAPSLVTPETPAAYRRMIVADFLKGFLSRKLVGKSYVDVMRIQNGGDKDN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Potri.001G355100 [exp]	0	1
AT4G33300		ADR1-L1	ADR1-like 1 (.1.2)		Potri.002G129300 [exp]	2.44	0.7460	ADR1.1
AT5G52430			hydroxyproline-rich glycoprote...		Potri.001G102200 [exp]	3.60	0.7469
AT1G11330			S-locus lectin protein kinase ...		Potri.011G039100 [exp]	5.65	0.7156
AT2G24100		ASG1	ALTERED SEED GERMINATION 1, un...		Potri.003G185050 [exp]	7.54	0.7240
AT2G27830			unknown protein		Potri.004G188600 [exp]	7.74	0.6956
AT2G21520			Sec14p-like phosphatidylinosit...		Potri.005G230500 [exp]	10.48	0.6712
AT2G29060	GRAS		GRAS family transcription fact...		Potri.001G242000 [exp]	15.87	0.6811
AT4G27290			S-locus lectin protein kinase ...		Potri.011G128900 [exp]	17.66	0.6554
AT4G17080			Histone H3 K4-specific methylt...		Potri.001G149400 [exp]	17.66	0.6605
AT1G27300			unknown protein		Potri.003G170700 [exp]	17.66	0.6736

Compare expression of checked genes

Potri.001G355100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.