Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17020 329 / 2e-111 ATSRG1, SRG1 senescence-related gene 1 (.1) AT1G17010 318 / 5e-107 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G25300 317 / 1e-106 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G78550 317 / 2e-106 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G25310 301 / 2e-100 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G21420 251 / 6e-81 LBO1 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G38240 233 / 9e-74 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G20400 215 / 6e-67 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G05600 211 / 2e-65 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G11180 208 / 8e-64 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G355100 [exp] 353 / 8e-121 AT1G17020 439 / 1e-154 senescence-related gene 1 (.1) Potri.001G382400 [exp] 350 / 1e-119 AT1G17020 446 / 1e-157 senescence-related gene 1 (.1) Potri.001G381700 [exp] 344 / 4e-117 AT1G17020 436 / 2e-153 senescence-related gene 1 (.1) Potri.009G025900 [exp] 339 / 2e-115 AT4G25300 410 / 3e-143 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.009G022800 [exp] 255 / 2e-82 AT1G17020 302 / 6e-101 senescence-related gene 1 (.1) Potri.010G023600 [exp] 254 / 4e-82 AT3G21420 511 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G201000 [exp] 236 / 9e-75 AT3G21420 290 / 5e-96 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G200900 [exp] 225 / 9e-71 AT3G21420 288 / 4e-95 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G062500 [exp] 224 / 1e-70 AT5G20400 432 / 2e-152 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011987 [exp] 363 / 2e-124 AT1G78550 284 / 1e-93 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10011986 [exp] 347 / 3e-118 AT1G17020 291 / 3e-96 senescence-related gene 1 (.1) Lus10011980 [exp] 333 / 9e-113 AT1G17020 382 / 1e-132 senescence-related gene 1 (.1) Lus10026173 [exp] 329 / 4e-111 AT1G17020 443 / 5e-156 senescence-related gene 1 (.1) Lus10011981 [exp] 328 / 1e-110 AT1G17020 375 / 2e-129 senescence-related gene 1 (.1) Lus10022292 [exp] 325 / 1e-109 AT1G17020 449 / 5e-159 senescence-related gene 1 (.1) Lus10011979 [exp] 322 / 1e-108 AT1G17020 374 / 4e-129 senescence-related gene 1 (.1) Lus10011985 [exp] 312 / 2e-104 AT1G17020 367 / 4e-126 senescence-related gene 1 (.1) Lus10015252 [exp] 310 / 1e-103 AT1G17020 375 / 1e-129 senescence-related gene 1 (.1) Lus10032574 [exp] 283 / 6e-93 AT4G25300 419 / 2e-146 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF03171 [poplar] [flax] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily CL0029 [poplar] [flax] Cupin PF14226 [poplar] [flax] DIOX_N non-haem dioxygenase in morphine synthesis N-terminal
Representative CDS sequence Show only first row Show all	>Potri.001G355200.1 pacid=42789819 polypeptide=Potri.001G355200.1.p locus=Potri.001G355200 ID=Potri.001G355200.1.v4.1 annot-version=v4.1 ATGGCATCCTCGAAGTCAGATAGCTTAGATGTTCATTCTGTAATTAGTGTTATGGAGCTCGTCAAAGAGCCCATAATCTCAGTCCCCAAAGAATATGTTC ACATGGATCAACAAAACCCAACCTTTTCTGTTCGCACTGATCATCCCCTTCCAACTCTTCCCACCATTGATTTCAAGCTGTTGGTCTCGGTGGATACCAC GGATTTGGAGCTAGAAAAGTTGCACTCCACTTGCAAAGAATGGGGTTTCTTTCAGTTGGTGAACCATGGTGTTAGCTCATCACTGCTGGAGCAGCTGAAA CATGAGATTGAAGAATTTTATAATCTTCCATTGGAAGATAAAAGGAAATACATGGTAAGGCCAGATGATTTTCAAGGGTATGGCAATACCAAATTAGATG AGATACTTGACTGGGGTGATAGATTCTATATGATTACCAATCCTATTCATCACAGGAAGCCACATCTTTTCCCAGAGCTCCCACCATCATTCAGGAATCT CTTGGAATGTTATCTGCTGGAATTGCAAAGACTTGCCATGAAACTGCTTGGGTTTATAGCAGAAGCTCTGAAAGTGGACTTGAAGGAGATTGGGGAGATT TTTGATGATGGGTTACAATCAGTGAGAATGACATGCTATCCCCCATGCCCACAGCCAGAACTTGTTGTAGGCTTCAGACCTCACTCAGACGCCACTGGCA TCACCATACTTAATCAAGTCAATGGTGTAGATGGTCTTCAGATAAAAAGAGATGGGGTTTGGATTCCGGTGAAATTCATCCCAGATGCTCTTGTAGTAAA TGTGGGAGACATTCTAGAGATTCTGAGCAACGGTGTCTATAAAAGCATTGAGCACAGGGCCACGACAAATTCCAAGGAAGAAAGGCTCTCTATGGCTTTT TTTGTCAGCCCCAAATTCGAGGCAGAGGTTGGTCCTTTGACTAGTTTAATCAGCCCACAAAATCCACCATTATTTCGAAGAATAGGGATGGAAAAATATG TCAAAGACTTCTTCTCCCGCAAGCTCCAAGGGAAATCATTCTTGGAGGACATGAAAATTGAAGGAGCTGAAGAGGCTACACTGCTTGATGGCAATTGA
AA sequence Show only first row Show all	>Potri.001G355200.1 pacid=42789819 polypeptide=Potri.001G355200.1.p locus=Potri.001G355200 ID=Potri.001G355200.1.v4.1 annot-version=v4.1 MASSKSDSLDVHSVISVMELVKEPIISVPKEYVHMDQQNPTFSVRTDHPLPTLPTIDFKLLVSVDTTDLELEKLHSTCKEWGFFQLVNHGVSSSLLEQLK HEIEEFYNLPLEDKRKYMVRPDDFQGYGNTKLDEILDWGDRFYMITNPIHHRKPHLFPELPPSFRNLLECYLLELQRLAMKLLGFIAEALKVDLKEIGEI FDDGLQSVRMTCYPPCPQPELVVGFRPHSDATGITILNQVNGVDGLQIKRDGVWIPVKFIPDALVVNVGDILEILSNGVYKSIEHRATTNSKEERLSMAF FVSPKFEAEVGPLTSLISPQNPPLFRRIGMEKYVKDFFSRKLQGKSFLEDMKIEGAEEATLLDGN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Potri.001G355200 [exp]	0	1
					Potri.009G093600 [exp]	2.82	0.9351
AT3G10050		OMR1	L-O-methylthreonine resistant ...		Potri.006G118400 [exp]	3.31	0.9289
AT5G25880		ATNADP-ME3	Arabidopsis thaliana NADP-mali...		Potri.006G236500 [exp]	8.88	0.9468
AT5G50080	AP2_ERF	ERF110	ethylene response factor 110 ...		Potri.002G065600 [exp]	11.22	0.9220
AT2G26530		AR781	Protein of unknown function (D...		Potri.002G128500 [exp]	13.41	0.9466
					Potri.008G174050 [exp]	14.69	0.9179
AT4G20970	bHLH	bHLH162	basic helix-loop-helix (bHLH) ...		Potri.015G074500 [exp]	18.54	0.9427
AT4G21390		B120	S-locus lectin protein kinase ...		Potri.011G037300 [exp]	20.73	0.9425
AT5G05600			2-oxoglutarate (2OG) and Fe(II...		Potri.016G117100 [exp]	21.33	0.9274
AT4G21390		B120	S-locus lectin protein kinase ...		Potri.011G037600 [exp]	23.62	0.9418

Compare expression of checked genes

Potri.001G355200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.