Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46550 201 / 8e-58 DNA-binding bromodomain-containing protein (.1) AT5G14270 139 / 8e-35 ATBET9 bromodomain and extraterminal domain protein 9 (.1.2) AT5G63320 137 / 8e-35 NPX1 nuclear protein X1 (.1.2.3) AT3G01770 137 / 4e-34 ATBET10 bromodomain and extraterminal domain protein 10 (.1) AT3G27260 134 / 7e-33 GTE8 global transcription factor group E8 (.1.2) AT1G06230 132 / 4e-32 GTE4 global transcription factor group E4 (.1.2.3) AT1G73150 126 / 4e-31 GTE3 global transcription factor group E3 (.1) AT1G17790 124 / 4e-30 DNA-binding bromodomain-containing protein (.1) AT5G65630 109 / 5e-25 GTE7 global transcription factor group E7 (.1) AT5G10550 101 / 2e-22 GTE2 global transcription factor group E2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G077100 [exp] 759 / 0 AT5G46550 181 / 2e-50 DNA-binding bromodomain-containing protein (.1) Potri.015G091800 [exp] 142 / 1e-35 AT5G63320 521 / 6e-171 nuclear protein X1 (.1.2.3) Potri.001G335000 [exp] 141 / 2e-35 AT3G27260 460 / 5e-151 global transcription factor group E8 (.1.2) Potri.013G118900 [exp] 140 / 5e-35 AT1G06230 463 / 5e-153 global transcription factor group E4 (.1.2.3) Potri.019G090700 [exp] 140 / 5e-35 AT1G06230 443 / 2e-145 global transcription factor group E4 (.1.2.3) Potri.012G094300 [exp] 137 / 5e-34 AT5G63320 513 / 9e-168 nuclear protein X1 (.1.2.3) Potri.011G096400 [exp] 127 / 2e-31 AT1G06230 243 / 5e-72 global transcription factor group E4 (.1.2.3) Potri.001G376400 [exp] 125 / 5e-31 AT1G06230 267 / 4e-82 global transcription factor group E4 (.1.2.3) Potri.001G285700 [exp] 116 / 2e-27 AT1G73150 214 / 4e-63 global transcription factor group E3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011989 [exp] 360 / 5e-118 AT5G46550 244 / 3e-74 DNA-binding bromodomain-containing protein (.1) Lus10002784 [exp] 358 / 3e-117 AT5G46550 241 / 3e-73 DNA-binding bromodomain-containing protein (.1) Lus10032076 [exp] 138 / 3e-34 AT3G27260 450 / 6e-147 global transcription factor group E8 (.1.2) Lus10014609 [exp] 138 / 4e-34 AT3G27260 458 / 2e-150 global transcription factor group E8 (.1.2) Lus10033623 [exp] 135 / 3e-33 AT1G06230 493 / 9e-164 global transcription factor group E4 (.1.2.3) Lus10017661 [exp] 135 / 3e-33 AT1G06230 499 / 3e-165 global transcription factor group E4 (.1.2.3) Lus10033624 [exp] 135 / 4e-33 AT1G06230 494 / 2e-163 global transcription factor group E4 (.1.2.3) Lus10020470 [exp] 110 / 2e-26 AT5G65630 173 / 3e-49 global transcription factor group E7 (.1) Lus10034067 [exp] 110 / 4e-25 AT1G06230 304 / 7e-95 global transcription factor group E4 (.1.2.3) Lus10007096 [exp] 109 / 5e-25 AT1G06230 213 / 1e-62 global transcription factor group E4 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00439 [poplar] [flax] Bromodomain Bromodomain
Representative CDS sequence Show only first row Show all	>Potri.001G355300.1 pacid=42793227 polypeptide=Potri.001G355300.1.p locus=Potri.001G355300 ID=Potri.001G355300.1.v4.1 annot-version=v4.1 ATGATTGCTTCTGGGAATGTAACAATGAAGAAGTTAACGATTAAGATCGCTTCACAAAGAATACAAGCTATTCCTGGGAAAAAGTTGCTTGGTGCTGAAC AGAGTTGCAGCGCTTCTATGGGTGAGAATCATGGTTCTCAGATGACAAAACAGAAATCTGTGGCCCCAGTTTCTAGGAAGCGTGGACCACCAGAGATGAT AGAGTGTCAACAGCAGAAGAGGCAGAAGATGGACCGTAGTGTGACACAACAGTGTTCTTCCCTTCTAAAATCACTGATGGCTCATCCAGCTGGATGGGTT TTTAATAAGCCTGTGGATCCAGTAGCACTGAAGATTCCTGATTATTTCACTGTTATATCAAATCCCATGGATTTAGGAACAGTAAAGTCCAAGCTAGGAA AGAATTTTTATGCTAGCATCAATGAGTTTGCAGCTGATATCAGACTGACCTTTTCAAATGCCATGCTGTATAATCCTCCGTCAAATAATGTCCATAGAAT GGCGGAGGAACTAAATGGGATTTTTGAGACAGGGTGGAAAGCTTTGGAGGAAAACTGGAATCATGAAGGACCAAAGTTTGGAAGTGGAAAGATTTCAAGT GGATGCACAACACAAATCGTCAATGCCAAACAGAATTGTCTCAGTATGCCTTCTATGCACTGTACTACTCTGCCAAAGAGATCAAAAACATCCAAAGAAA ACGTGATAAGGAACTTGTCCAATGCAAGTGTTATTACGGAAGCAAAGCCTACTAAACCAGCAGAGATGCGCAAGTCCCTTGTGCCAAACTCTTACAAAGG TGCTGATGGTGGCGGTAGACATGCATGTGGCTCTACAAATGTGAAGCCATTGTTGATTCCAGTTGCTTCAAACTGTGGTAAATGTGGCAGTAATGCTTGC CGATGCAGCCTCCAAATTGATTCATACCATACAAACTCAGATATATCTTCTGAGAGATCATCTGGGAGGGATCAGCATGCATGCAGCACTGATACCTCAA AACTGGCGAAAATCATGCCTGCCACACAATCAAGCAAGTCAGATCCAGATTCTGATGAGGCTGTTAGTGCTTTGGATGATGAGAATATATGTCCTGGTTC CCAGCTTACAACTCCTGCAACAGATGCAGCTTCTGGAGAAGAGTTGAGCTCTCTTTTTGCTGTACCATTGTCTCCAAGTAAAGCTCTTCGTTATGCAACA ATAAAGCATCGATTTGCAGATACCATCTTAAAAGCTCAAAATAAGGCAGTGCTTGATAATGGTGATAAAGCTGATCCAATGAAGATGCGGCAGGTGAAGG AAAGATTGGAAAGGCGGCAGCAGGAAGAGAAGGCTAGGATTGAAGCACAAATCCGAGCTGCCGAAGCTGCCACGCGAAGGAGGGAAGAGACGGAAATGAA AAGGCAACGGGAGAGGGAACGAGAAGCTGCTCGAATTGAACTGCAAAAGATGGAAAAAACTACTGGGATCGAACAGAACCTAGATATTCTAAAAGAACTG GAGATGCTCTGTGGCTGTTCAATATCACTGAATTACCATTTTGGCAGTGGAAGGATGGAAGTGGTAAAGGGAGAAATCGGAGCTTGCATTGGTAGCCCAC TTGAGCGGTTGGGATTGTTTATAAAAGATGACATTGAAGACGTGGATGAGGAGTTTCTGGATGAAGATGGAGAGGAAGGAGAGATACTCTGTTAA
AA sequence Show only first row Show all	>Potri.001G355300.1 pacid=42793227 polypeptide=Potri.001G355300.1.p locus=Potri.001G355300 ID=Potri.001G355300.1.v4.1 annot-version=v4.1 MIASGNVTMKKLTIKIASQRIQAIPGKKLLGAEQSCSASMGENHGSQMTKQKSVAPVSRKRGPPEMIECQQQKRQKMDRSVTQQCSSLLKSLMAHPAGWV FNKPVDPVALKIPDYFTVISNPMDLGTVKSKLGKNFYASINEFAADIRLTFSNAMLYNPPSNNVHRMAEELNGIFETGWKALEENWNHEGPKFGSGKISS GCTTQIVNAKQNCLSMPSMHCTTLPKRSKTSKENVIRNLSNASVITEAKPTKPAEMRKSLVPNSYKGADGGGRHACGSTNVKPLLIPVASNCGKCGSNAC RCSLQIDSYHTNSDISSERSSGRDQHACSTDTSKLAKIMPATQSSKSDPDSDEAVSALDDENICPGSQLTTPATDAASGEELSSLFAVPLSPSKALRYAT IKHRFADTILKAQNKAVLDNGDKADPMKMRQVKERLERRQQEEKARIEAQIRAAEAATRRREETEMKRQREREREAARIELQKMEKTTGIEQNLDILKEL EMLCGCSISLNYHFGSGRMEVVKGEIGACIGSPLERLGLFIKDDIEDVDEEFLDEDGEEGEILC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G46550			DNA-binding bromodomain-contai...		Potri.001G355300 [exp]	0	1
AT3G48800			Sterile alpha motif (SAM) doma...		Potri.012G104700 [exp]	1.41	0.8586
AT1G55520		ATTBP2, TBP2	A. THALIANA TATA BINDING PROTE...		Potri.013G059300 [exp]	1.73	0.8522	GTF901,Pt-TBP1.3
AT3G17120			unknown protein		Potri.008G102700 [exp]	2.23	0.8349
AT5G12230		MED19A	unknown protein		Potri.004G193800 [exp]	2.44	0.8305
AT3G06250	FAR1_related	FRS7	FAR1-related sequence 7 (.1)		Potri.010G029000 [exp]	2.64	0.8615
AT5G03990			unknown protein		Potri.016G042400 [exp]	4.24	0.7904
AT2G40950	bZIP	BZIP17	Basic-leucine zipper (bZIP) tr...		Potri.006G034500 [exp]	5.19	0.8244
AT3G27260		GTE8	global transcription factor gr...		Potri.001G335000 [exp]	5.65	0.8249	GTE903
AT1G05840			Eukaryotic aspartyl protease f...		Potri.014G146400 [exp]	5.83	0.7925
AT1G17780			unknown protein		Potri.001G376800 [exp]	6.92	0.8428

Compare expression of checked genes

Potri.001G355300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.