Plant FIBer expression Database

VTC2.2 (Potri.001G355600) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol VTC2.2
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G26850 624 / 0 VTC2 mannose-1-phosphate guanylyltransferase (GDP)s;GDP-galactose:mannose-1-phosphate guanylyltransferases;GDP-galactose:glucose-1-phosphate guanylyltransferases;GDP-galactose:myoinositol-1-phosphate guanylyltransferases;glucose-1-phosphate guanylyltransferase
AT5G55120 591 / 0 VTC5 VITAMIN C DEFECTIVE 5, galactose-1-phosphate guanylyltransferase (GDP)s;GDP-D-glucose phosphorylases;quercetin 4'-O-glucosyltransferases (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G087200
[exp]
756 / 0 AT4G26850 633 / 0.0 mannose-1-phosphate guanylyltransferase (GDP)s;GDP-galactose:mannose-1-phosphate guanylyltransferases;GDP-galactose:glucose-1-phosphate guanylyltransferases;GDP-galactose:myoinositol-1-phosphate guanylyltransferases;glucose-1-phosphate guanylyltransferase
Potri.017G126100
[exp]
535 / 0 AT4G26850 547 / 0.0 mannose-1-phosphate guanylyltransferase (GDP)s;GDP-galactose:mannose-1-phosphate guanylyltransferases;GDP-galactose:glucose-1-phosphate guanylyltransferases;GDP-galactose:myoinositol-1-phosphate guanylyltransferases;glucose-1-phosphate guanylyltransferase
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009725
[exp]
671 / 0 AT4G26850 643 / 0.0 mannose-1-phosphate guanylyltransferase (GDP)s;GDP-galactose:mannose-1-phosphate guanylyltransferases;GDP-galactose:glucose-1-phosphate guanylyltransferases;GDP-galactose:myoinositol-1-phosphate guanylyltransferases;glucose-1-phosphate guanylyltransferase
PFAM info
Representative CDS sequence
>Potri.001G355600.1 pacid=42793504 polypeptide=Potri.001G355600.1.p locus=Potri.001G355600 ID=Potri.001G355600.1.v4.1 annot-version=v4.1
ATGATGCTAAGGATCAAGAGGGTTCCTACTGTTGTTTCCAATTACCAGAAAGAGGACGGTAATGAGGGTTCTCGCCGCGGAGGGGGCTGCGGCCGCAATT
GCCTTCAAAATTGTTGTCTTCAAGACGCATGCCTTCCTTTATATGCTTTCAAGAAAGTGGACAGTATTGTCTCTAAGAAGAAGGGTGTGGGTGTGTTTGA
GTATGACAAGGGGGAGCCTCCAGTTGCATTCCTCGACTCGCTTCTTCTTGGGGAGTGGGAGGACCGTGTGCAGAGAGGGCTCTTTCGCTATGATGTTACT
GCCTGTGAAACCAAGGTGATACCGGGTCAGCATGGTTTTATCGCTCAGCTGAACGAGGGCCGTCACTTGAAGAAGAGGCCAACTGAATTCCGTGTTGATA
AGGTTCTTCAGCCCTTTGACGGAAACAAATTTAACTTCACTAAAGTTGGCCAAGAAGAGGTGCTCTTCCAGTTTGGTGCAAGTGAAGATGGGGAAGTTCA
GTTCTTCCCAGATGCACCTATTGATCCTGAGAATTCTCCAAGCATGGTCGCCATCAATGTGAGCCCTATTGAATATGGGCATGTGCTGTTAATCCCACGT
GTTCTGGACTGCTTGCCACAGAGGATTGATCGTGATAGCTTCATGCTTGCAATTTACATGGCAGCTGAAGCTGGGAATCCATACTTCCGACTGGGTTACA
ATAGCTTGGGTGCTTTTGCAACCATTAACCACCTTCACTTTCAGGCTTACTACTTGGCCGTGCCATTTCCGATTGAGAAGGCACCCACCAAGGAGATAAC
TACATCAGATGGTGGCGTGAAAATCTCTGAGCTTGTGAATTATCCTGTGAGAGGCCTAGTCTTTGAGGGTGGAAATGCCCTGCTAGATTTATCAAACGGT
GTCTCGGATGCCTGCATTTGCCTTCAAGAAAACAACATACCTTACAATGTGCTCATTGCTGATTGTGGAAACCGTATCTTTCTCCTTCCACAGTGTTATG
CTGAGAAACAAGCTCTAGGGGAAGTAAGTCCTGAGCTTCTTGATACCCAAGTGAACCCTGCCGTGTGGGAAATTAGTGGTCATATGGTGTTGAAGAGGAA
AAAAGACTATGAGGAGGCATCTGAAGAGAATGCTTGGAGGCTTCTTGCAGAGGTTTCTCTCTCTGAAGAGAGATTCCAAGAAGTGACTGCTCTCATCTTT
GAAGCCATTTCCTACCGTAGTTGTGTCATTGGAACTGATTCTGAGAACTTGCTGGAGGATGTAAATGTGGAACATCAACTTGTCGAAGAAGTGAATGCTA
TTAATGAAAGCTCCCATCAAGCCATGGTTACTGGGAATCAGGATTGCCTAGTTCTGCATTGA
AA sequence
>Potri.001G355600.1 pacid=42793504 polypeptide=Potri.001G355600.1.p locus=Potri.001G355600 ID=Potri.001G355600.1.v4.1 annot-version=v4.1
MMLRIKRVPTVVSNYQKEDGNEGSRRGGGCGRNCLQNCCLQDACLPLYAFKKVDSIVSKKKGVGVFEYDKGEPPVAFLDSLLLGEWEDRVQRGLFRYDVT
ACETKVIPGQHGFIAQLNEGRHLKKRPTEFRVDKVLQPFDGNKFNFTKVGQEEVLFQFGASEDGEVQFFPDAPIDPENSPSMVAINVSPIEYGHVLLIPR
VLDCLPQRIDRDSFMLAIYMAAEAGNPYFRLGYNSLGAFATINHLHFQAYYLAVPFPIEKAPTKEITTSDGGVKISELVNYPVRGLVFEGGNALLDLSNG
VSDACICLQENNIPYNVLIADCGNRIFLLPQCYAEKQALGEVSPELLDTQVNPAVWEISGHMVLKRKKDYEEASEENAWRLLAEVSLSEERFQEVTALIF
EAISYRSCVIGTDSENLLEDVNVEHQLVEEVNAINESSHQAMVTGNQDCLVLH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G26850 VTC2 mannose-1-phosphate guanylyltr... Potri.001G355600
[exp]
0 1 VTC2.2
AT3G02830 C3HZnF ZFN1 zinc finger protein 1 (.1) Potri.019G053200
[exp]
2.23 0.8295 ZFN3.2
AT3G26780 MEF14 mitochondrial editing factor 1... Potri.014G145900
[exp]
8.94 0.7626
AT2G17695 unknown protein Potri.005G105500
[exp]
9.69 0.7940
AT1G74210 AtGDPD5 glycerophosphodiester phosphod... Potri.015G058400
[exp]
21.49 0.7371
AT1G71040 LPR2 Low Phosphate Root2, Cupredoxi... Potri.010G114200
[exp]
37.41 0.7562
AT1G45000 AAA-type ATPase family protein... Potri.009G120500
[exp]
47.69 0.7304
AT2G22540 MADS AGL22, SVP SHORT VEGETATIVE PHASE, AGAMOU... Potri.002G105600
[exp]
77.10 0.7188
AT4G01100 ADNT1 adenine nucleotide transporter... Potri.001G094100
[exp]
92.81 0.7245
AT1G06990 GDSL-like Lipase/Acylhydrolase... Potri.008G076600
[exp]
99.90 0.7055
AT3G23280 XBAT35 XB3 ortholog 5 in Arabidopsis ... Potri.008G167600
[exp]
184.55 0.6979

Potri.001G355600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.