Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-CNX5.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55130 683 / 0 SIR1, CNX5 SIRTINOL RESISTANT 1, "co-factor for nitrate, reductase and xanthine dehydrogenase 5", co-factor for nitrate, reductase and xanthine dehydrogenase 5 (.1.2) AT2G21470 93 / 6e-20 EMB2764, ATSAE2, SAE2 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) AT5G06460 81 / 8e-16 ATUBA2 ,UBA 2 ARABIDOPSIS THALIANA UBIQUITIN ACTIVATING ENZYME 2, ubiquitin activating enzyme 2 (.1) AT5G19180 71 / 5e-13 ECR1 E1 C-terminal related 1 (.1) AT5G19370 64 / 4e-11 rhodanese-like domain-containing protein / PPIC-type PPIASE domain-containing protein (.1) AT1G05350 58 / 7e-09 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G05180 54 / 1e-07 AXR1 AUXIN RESISTANT 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT2G32410 50 / 2e-06 AXL1, AXL AXR1- like 1, AXR1-like (.1.2) AT5G66040 43 / 5e-05 STR16 sulfurtransferase protein 16 (.1.2) AT5G37530 45 / 8e-05 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G120200 [exp] 96 / 1e-20 AT2G21470 900 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) Potri.004G158900 [exp] 92 / 2e-19 AT2G21470 896 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) Potri.009G075800 [exp] 79 / 3e-15 AT2G30110 1762 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Potri.001G280600 [exp] 78 / 7e-15 AT2G30110 1751 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Potri.009G075700 [exp] 77 / 1e-14 AT2G30110 1734 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Potri.010G031900 [exp] 75 / 3e-14 AT5G19180 663 / 0.0 E1 C-terminal related 1 (.1) Potri.008G204000 [exp] 72 / 2e-13 AT5G19180 654 / 0.0 E1 C-terminal related 1 (.1) Potri.015G096300 [exp] 65 / 5e-11 AT1G05350 571 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G229100 [exp] 62 / 3e-10 AT1G05180 884 / 0.0 AUXIN RESISTANT 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022510 [exp] 720 / 0 AT5G55130 651 / 0.0 SIRTINOL RESISTANT 1, "co-factor for nitrate, reductase and xanthine dehydrogenase 5", co-factor for nitrate, reductase and xanthine dehydrogenase 5 (.1.2) Lus10000697 [exp] 717 / 0 AT5G55130 643 / 0.0 SIRTINOL RESISTANT 1, "co-factor for nitrate, reductase and xanthine dehydrogenase 5", co-factor for nitrate, reductase and xanthine dehydrogenase 5 (.1.2) Lus10017479 [exp] 96 / 7e-21 AT2G21470 900 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) Lus10012507 [exp] 79 / 2e-15 AT2G30110 1706 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Lus10028804 [exp] 77 / 1e-14 AT2G21470 855 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) Lus10010507 [exp] 72 / 2e-13 AT5G19180 716 / 0.0 E1 C-terminal related 1 (.1) Lus10034043 [exp] 72 / 2e-13 AT5G19180 722 / 0.0 E1 C-terminal related 1 (.1) Lus10015115 [exp] 65 / 6e-11 AT1G05180 860 / 0.0 AUXIN RESISTANT 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10031562 [exp] 59 / 3e-09 AT1G05180 778 / 0.0 AUXIN RESISTANT 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10012566 [exp] 43 / 0.0001 AT5G66040 129 / 1e-39 sulfurtransferase protein 16 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [poplar] [flax] Phosphatase PF00581 [poplar] [flax] Rhodanese Rhodanese-like domain CL0063 [poplar] [flax] NADP_Rossmann PF00899 [poplar] [flax] ThiF ThiF family
Representative CDS sequence Show only first row Show all	>Potri.001G355800.1 pacid=42790916 polypeptide=Potri.001G355800.1.p locus=Potri.001G355800 ID=Potri.001G355800.1.v4.1 annot-version=v4.1 ATGGAAAACAAAATGGAGTCAAAGGGAGGTGAAGCTGCTAGAATCCTCAGCGAAATTGAAACATTAAAGGCTACGAGGAGCGACTTAGACAATCGAATTT CTGCTCTCGAAGCTCAGCTCCGTCACTTGAATTTTGAGAAAAACAACGTTTCCTGTCCTTCAATATCCACCGGCTTCGGTCACGGATTATCACCTGATAT GATATACCGTTACAGTCGCCAGCTGCTGCTCCCCTCTTTCGGAGTTCAAGGTCAGTCAAATCTGTTGAAGTCTTCGATTTTAGTAGTTGGAGCCGGAGGG TTGGGTTCGCCTGCGCTGTTATATCTTGCAGCTTGTGGTGTTGGTCAATTAGGTGTTGTTGACCATGATGTTGTTGAGCTGAATAATATGCACAGGCAGG TTATACACACAGAAGCGTATATTGGTCAGCCAAAAGTGAAATCTGCTGCTGCTGCCTGTCGCTTGATCAATTCTACAATTCAAATTGTGGAACACCAAGA AGCTTTACGCACATCCAATGCTTTGGAAATTCTGAGCCAATATGACATAATAGTAGATGCAACAGACAATGCTCCAAGTCGATACATGATCAGTGATTGT TGTGTGGTTTTGGGGAAGCCACTTGTTTCAGGCGCTGCATTGGGATTGGAAGGGCAGCTCACAGTCTATAATCACAACAGAGGTCCATGCTATAGATGCC TTTTTCCTACTCCTCCACCTACAACTGCATGTCAAAGATGTGCCGATAGTGGAGTTCTTGGAGTGGTGCCTGGCATCATAGGCTGTCTTCAAGCATTAGA GGCCATTAAAATTGCAAGTGCTGTTGGTGAACCACTATCAGAACGGATGCTTCTTTTTGATGCATTGTCAGCTCGAATTCGTATTGTCAAGATCAGAGGT AGATCATTACAATGTGAAGTATGTGGAGAAAATTCAGCTTTCACCCAGCAACAATTTAAAGATTTTGATTATGAGAAGTTCACTCAGTCTCCATTGTCGG CGGCTCCCTTGATGTTGAACCTGCTTCCAGAAGATCACAGGATACACAGCAGAGAGTTGAAAGAGAGAATTGTTAAAGGGGAGGCTCATGTGCTGGTAGA CGTACGCCCTGCACACCACTTCAAGATTGTTTCTCTTCCCAATGCCATGAATATCCCATTATCAAGTCTAGAGTCTAGGTTAGCTGAGATCTCATCAGCT TTAAAGGAAGAAGAAAAGCGGAAGGATAGTGGCTTTGAATCTGGTGCAAGTCTGTATGTGATATGCAGACGAGGTAATGATTCACAGATGGCTGTTCAAT TGTTGCACAAAGTGGGCTTCACTTCAGCCAGAGATATAATTGGAGGTTTGGAGGCCTGGGCACGTGATGTGGATCCGAATATCCCTACCTATTAG
AA sequence Show only first row Show all	>Potri.001G355800.1 pacid=42790916 polypeptide=Potri.001G355800.1.p locus=Potri.001G355800 ID=Potri.001G355800.1.v4.1 annot-version=v4.1 MENKMESKGGEAARILSEIETLKATRSDLDNRISALEAQLRHLNFEKNNVSCPSISTGFGHGLSPDMIYRYSRQLLLPSFGVQGQSNLLKSSILVVGAGG LGSPALLYLAACGVGQLGVVDHDVVELNNMHRQVIHTEAYIGQPKVKSAAAACRLINSTIQIVEHQEALRTSNALEILSQYDIIVDATDNAPSRYMISDC CVVLGKPLVSGAALGLEGQLTVYNHNRGPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKIASAVGEPLSERMLLFDALSARIRIVKIRG RSLQCEVCGENSAFTQQQFKDFDYEKFTQSPLSAAPLMLNLLPEDHRIHSRELKERIVKGEAHVLVDVRPAHHFKIVSLPNAMNIPLSSLESRLAEISSA LKEEEKRKDSGFESGASLYVICRRGNDSQMAVQLLHKVGFTSARDIIGGLEAWARDVDPNIPTY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G55130		SIR1, CNX5	SIRTINOL RESISTANT 1, "co-fact...		Potri.001G355800 [exp]	0	1	Pt-CNX5.1
AT5G63120			P-loop containing nucleoside t...		Potri.012G084600 [exp]	3.46	0.6787
AT2G04740			ankyrin repeat family protein ...		Potri.014G163200 [exp]	5.47	0.6476
AT5G26800			unknown protein		Potri.005G011800 [exp]	16.73	0.6795
AT1G60080			3'-5'-exoribonuclease family p...		Potri.016G055600 [exp]	19.10	0.6504
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Potri.014G107900 [exp]	23.45	0.6339
AT4G38020			tRNA/rRNA methyltransferase (S...		Potri.005G147600 [exp]	34.35	0.6536
AT2G18290		EMB2783, APC10	EMBRYO DEFECTIVE 2783, anaphas...		Potri.005G121700 [exp]	37.34	0.5624
AT4G16060			unknown protein		Potri.010G006000 [exp]	37.84	0.6420
AT5G04520			Protein of unknown function DU...		Potri.010G233000 [exp]	39.91	0.6368
AT3G55620		eIF6A, EMB1624	embryo defective 1624, eukaryo...		Potri.005G098700 [exp]	40.09	0.5786

Compare expression of checked genes

Potri.001G355800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.