Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32990 736 / 0 ATGH9B8 glycosyl hydrolase 9B8 (.1) AT1G64390 602 / 0 ATGH9C2 glycosyl hydrolase 9C2 (.1) AT4G11050 595 / 0 ATGH9C3 glycosyl hydrolase 9C3 (.1) AT1G48930 531 / 0 ATGH9C1 glycosyl hydrolase 9C1 (.1) AT2G44550 469 / 4e-162 ATGH9B10 glycosyl hydrolase 9B10 (.1) AT2G44570 459 / 5e-158 ATGH9B12 glycosyl hydrolase 9B12 (.1) AT2G44560 457 / 3e-157 ATGH9B11 glycosyl hydrolase 9B11 (.1) AT2G44540 456 / 5e-157 ATGH9B9 glycosyl hydrolase 9B9 (.1) AT1G02800 436 / 5e-149 ATCEL2 cellulase 2 (.1) AT4G02290 436 / 1e-148 ATGH9B13 glycosyl hydrolase 9B13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G157600 [exp] 761 / 0 AT2G32990 800 / 0.0 glycosyl hydrolase 9B8 (.1) Potri.001G092200 [exp] 607 / 0 AT1G64390 951 / 0.0 glycosyl hydrolase 9C2 (.1) Potri.003G139600 [exp] 600 / 0 AT1G64390 999 / 0.0 glycosyl hydrolase 9C2 (.1) Potri.007G071200 [exp] 571 / 0 AT1G48930 850 / 0.0 glycosyl hydrolase 9C1 (.1) Potri.002G225200 [exp] 462 / 6e-162 AT2G32990 465 / 2e-163 glycosyl hydrolase 9B8 (.1) Potri.014G126900 [exp] 437 / 4e-149 AT4G02290 799 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.002G202400 [exp] 437 / 5e-149 AT4G02290 818 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.001G098800 [exp] 431 / 2e-146 AT4G09740 669 / 0.0 glycosyl hydrolase 9B14 (.1) Potri.015G128000 [exp] 429 / 2e-146 AT1G70710 569 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009724 [exp] 717 / 0 AT2G32990 693 / 0.0 glycosyl hydrolase 9B8 (.1) Lus10035316 [exp] 712 / 0 AT2G32990 751 / 0.0 glycosyl hydrolase 9B8 (.1) Lus10032377 [exp] 603 / 0 AT1G64390 989 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10001833 [exp] 603 / 0 AT1G64390 965 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10003888 [exp] 598 / 0 AT1G64390 960 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10033957 [exp] 578 / 0 AT1G64390 797 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10010201 [exp] 564 / 0 AT1G48930 812 / 0.0 glycosyl hydrolase 9C1 (.1) Lus10017402 [exp] 537 / 0 AT1G48930 746 / 0.0 glycosyl hydrolase 9C1 (.1) Lus10008208 [exp] 456 / 2e-156 AT4G02290 812 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10038223 [exp] 441 / 8e-151 AT4G02290 706 / 0.0 glycosyl hydrolase 9B13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [poplar] [flax] 6_Hairpin PF00759 [poplar] [flax] Glyco_hydro_9 Glycosyl hydrolase family 9
Representative CDS sequence Show only first row Show all	>Potri.001G356000.2 pacid=42790215 polypeptide=Potri.001G356000.2.p locus=Potri.001G356000 ID=Potri.001G356000.2.v4.1 annot-version=v4.1 ATGGAGAAGGCAAATAAGCAACACAAAGTGCTTAGACACTTGAAATTTACTCGGCTCTGCGCTTGGCTGCTCTCTTTCTTCGCTATTTTTCCCTTACGCC AATCTTTCAACTATGGTGAAGCTCTCTCAAAAAGTCTCCTCTATTTCGAATCGCAACGTTCTGGGCGGTTACCATACAATCAAAGAGTCGTTTGGCGATA CCATTCAGGCCTCGCCGATGGCCTAGAACAAGGAGTGGACTTGGTTGGAGGTTACTATGATGCTGGGGACAACGTCAAATTCGGTCTGCCGATGGCATTC ACTATAACAATGCTATCATGGTCTGTTATTGAATATAGCGAGCAGATTTCCGGTGCCGGAGAGTATGAACACGCGCTAGAGGCAATCAAATGGGGAACAG ATTATTTCATCAAAGCTCATACTCACCCCCATGTCTTATGGGCTGAGGTGGGAGATGGTGACACCGATCATTACTGTTGGCAGCGGCCGGAGGACATGAC AACGTCACGGCAAGCCTACAAGGTTGACGAGAACAACCCGGGATCAGACATGGCAGGGGAGACCGCGGCAGCAATGGCGGCAGCGTCCATTGTGTTTAGG AAAACAAACACACACTACTCCCACCTACTATTGCACCATGCAGAACAATTGTTTGAGTTTGGTGACAAGTACAGAGGGAAATACGATGAGAGTGTTAAGG TGGCGAAGGGGCACTACACGTCGGTGAGTGGCTACATGGACGAGTTGTTATGGGCAGGTTTATGGCTATACAAGGCCACCGGCGACGAAGGTTATTTGAA TTACGTGATAGAGAATGCTCATGTTTTTGGTGGAATCACTTGGGCCATCACCGAATTTAGCTGGGATGTCAAGTATGCCGGTGTTCAACTCATCGCTTCA ATGCTGCTAGCCGGAAAAAGCCACAGAAAACACCAACACATCCTTAAAGAATACCGTTCCAGGGCAGAGTACTACCTCTGTGCTTGCCTTAACAAAAATA ACGTGACTAACGTGCAACGGACCCCAGGCGGCTTACTTTACATTCGCCAATGGAACAACATGCAATATGTATCAACTGCAGCATTTCTTCTCACGACCTA CTCCGACCATCTTCAAGCCTCTAATCAACGGCTGCAATGCGATCAAGGTACACTGGACCCGTCAGATATCTTCAAGTTTGCCAAATCACAAGTTGATTAC ATATTAGGTTACAATCCACTGGGGATGAGCTACTTAGTTGGATATGGTGCAAAGTACCCTGAAAGGGTTCACCACAGAGGAGCATCTATTGAATCATATA AAGGGCAAAAGGATTTCATTGGATGCATGCAGGGATATGATATCGGGTACAGTCGACAAGGTCCGAATCCTAATGTTCTCACCGGAGCTTTGGTCGGTGG TCCTGACATGAAGGATCAGTTCAGGGATGAAAGGGAAAACTACATGCAAACTGAGGCCTGCACGTATAACACTGCGACTCTTGTAGGAGTTTTTGCTAAA TTGCACTGGCTGGAAAAGGATTATTTGTCTGCGAATCCATCATTATTTGCTACCATAAGATAA
AA sequence Show only first row Show all	>Potri.001G356000.2 pacid=42790215 polypeptide=Potri.001G356000.2.p locus=Potri.001G356000 ID=Potri.001G356000.2.v4.1 annot-version=v4.1 MEKANKQHKVLRHLKFTRLCAWLLSFFAIFPLRQSFNYGEALSKSLLYFESQRSGRLPYNQRVVWRYHSGLADGLEQGVDLVGGYYDAGDNVKFGLPMAF TITMLSWSVIEYSEQISGAGEYEHALEAIKWGTDYFIKAHTHPHVLWAEVGDGDTDHYCWQRPEDMTTSRQAYKVDENNPGSDMAGETAAAMAAASIVFR KTNTHYSHLLLHHAEQLFEFGDKYRGKYDESVKVAKGHYTSVSGYMDELLWAGLWLYKATGDEGYLNYVIENAHVFGGITWAITEFSWDVKYAGVQLIAS MLLAGKSHRKHQHILKEYRSRAEYYLCACLNKNNVTNVQRTPGGLLYIRQWNNMQYVSTAAFLLTTYSDHLQASNQRLQCDQGTLDPSDIFKFAKSQVDY ILGYNPLGMSYLVGYGAKYPERVHHRGASIESYKGQKDFIGCMQGYDIGYSRQGPNPNVLTGALVGGPDMKDQFRDERENYMQTEACTYNTATLVGVFAK LHWLEKDYLSANPSLFATIR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G32990		ATGH9B8	glycosyl hydrolase 9B8 (.1)		Potri.001G356000 [exp]	0	1
					Potri.017G046301 [exp]	4.58	0.8026
AT5G27660			Trypsin family protein with PD...		Potri.018G001550 [exp]	7.48	0.7621
AT5G39130			RmlC-like cupins superfamily p...		Potri.004G179811 [exp]	9.53	0.6757
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.003G211866 [exp]	10.67	0.7512
AT1G70500			Pectin lyase-like superfamily ...		Potri.015G088600 [exp]	12.32	0.7512
AT5G55180			O-Glycosyl hydrolases family 1...		Potri.016G135900 [exp]	13.07	0.7512
					Potri.001G426850 [exp]	14.83	0.7284
AT4G02270		RHS13	root hair specific 13 (.1)		Potri.002G201800 [exp]	15.87	0.6762
AT5G56360		PSL4	PRIORITY IN SWEET LIFE 4, calm...		Potri.013G060332 [exp]	15.96	0.6567
AT1G64870			unknown protein		Potri.014G054900 [exp]	18.70	0.6652

Compare expression of checked genes

Potri.001G356000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.