Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55230 855 / 0 ATMAP65-1 microtubule-associated proteins 65-1 (.1.2) AT4G26760 813 / 0 MAP65-2 microtubule-associated protein 65-2 (.1) AT1G14690 471 / 3e-160 MAP65-7 microtubule-associated protein 65-7 (.1.2) AT2G01910 463 / 4e-157 ATMAP65-6 Microtubule associated protein (MAP65/ASE1) family protein (.1), Microtubule associated protein (MAP65/ASE1) family protein (.2) AT5G51600 457 / 2e-153 ATMAP65-3, PLE PLEIADE, ARABIDOPSIS THALIANA MICROTUBULE-ASSOCIATED PROTEIN 65-3, Microtubule associated protein (MAP65/ASE1) family protein (.1) AT2G38720 452 / 3e-153 MAP65-5 microtubule-associated protein 65-5 (.1) AT1G27920 436 / 4e-147 MAP65-8 microtubule-associated protein 65-8 (.1) AT3G60840 390 / 3e-128 MAP65-4 microtubule-associated protein 65-4 (.1) AT5G62250 373 / 9e-123 MAP65-9 microtubule-associated protein 65-9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G092500 [exp] 1008 / 0 AT5G55230 863 / 0.0 microtubule-associated proteins 65-1 (.1.2) Potri.003G192400 [exp] 543 / 0 AT2G38720 555 / 0.0 microtubule-associated protein 65-5 (.1) Potri.015G131400 [exp] 491 / 3e-166 AT5G51600 728 / 0.0 PLEIADE, ARABIDOPSIS THALIANA MICROTUBULE-ASSOCIATED PROTEIN 65-3, Microtubule associated protein (MAP65/ASE1) family protein (.1) Potri.008G139700 [exp] 486 / 3e-166 AT2G01910 778 / 0.0 Microtubule associated protein (MAP65/ASE1) family protein (.1), Microtubule associated protein (MAP65/ASE1) family protein (.2) Potri.003G173300 [exp] 463 / 3e-157 AT1G27920 655 / 0.0 microtubule-associated protein 65-8 (.1) Potri.012G129600 [exp] 463 / 2e-155 AT5G51600 761 / 0.0 PLEIADE, ARABIDOPSIS THALIANA MICROTUBULE-ASSOCIATED PROTEIN 65-3, Microtubule associated protein (MAP65/ASE1) family protein (.1) Potri.001G055100 [exp] 454 / 1e-153 AT1G27920 623 / 0.0 microtubule-associated protein 65-8 (.1) Potri.014G070100 [exp] 444 / 4e-148 AT5G51600 451 / 5e-149 PLEIADE, ARABIDOPSIS THALIANA MICROTUBULE-ASSOCIATED PROTEIN 65-3, Microtubule associated protein (MAP65/ASE1) family protein (.1) Potri.005G057150 [exp] 155 / 7e-45 AT5G51600 181 / 1e-54 PLEIADE, ARABIDOPSIS THALIANA MICROTUBULE-ASSOCIATED PROTEIN 65-3, Microtubule associated protein (MAP65/ASE1) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032567 [exp] 879 / 0 AT5G55230 850 / 0.0 microtubule-associated proteins 65-1 (.1.2) Lus10043178 [exp] 860 / 0 AT5G55230 847 / 0.0 microtubule-associated proteins 65-1 (.1.2) Lus10008705 [exp] 513 / 4e-177 AT2G38720 565 / 0.0 microtubule-associated protein 65-5 (.1) Lus10026114 [exp] 504 / 1e-173 AT2G38720 553 / 0.0 microtubule-associated protein 65-5 (.1) Lus10041635 [exp] 490 / 2e-168 AT2G38720 550 / 0.0 microtubule-associated protein 65-5 (.1) Lus10031939 [exp] 489 / 3e-167 AT2G01910 838 / 0.0 Microtubule associated protein (MAP65/ASE1) family protein (.1), Microtubule associated protein (MAP65/ASE1) family protein (.2) Lus10035099 [exp] 483 / 9e-165 AT2G01910 822 / 0.0 Microtubule associated protein (MAP65/ASE1) family protein (.1), Microtubule associated protein (MAP65/ASE1) family protein (.2) Lus10015684 [exp] 470 / 6e-158 AT5G51600 759 / 0.0 PLEIADE, ARABIDOPSIS THALIANA MICROTUBULE-ASSOCIATED PROTEIN 65-3, Microtubule associated protein (MAP65/ASE1) family protein (.1) Lus10037691 [exp] 468 / 3e-157 AT5G51600 768 / 0.0 PLEIADE, ARABIDOPSIS THALIANA MICROTUBULE-ASSOCIATED PROTEIN 65-3, Microtubule associated protein (MAP65/ASE1) family protein (.1) Lus10015789 [exp] 456 / 2e-154 AT1G27920 673 / 0.0 microtubule-associated protein 65-8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03999 [poplar] [flax] MAP65_ASE1 Microtubule associated protein (MAP65/ASE1 family)
Representative CDS sequence Show only first row Show all	>Potri.001G356500.2 pacid=42791252 polypeptide=Potri.001G356500.2.p locus=Potri.001G356500 ID=Potri.001G356500.2.v4.1 annot-version=v4.1 ATGGCAGTCACGGATGCTCAAAACCCTCTTGTTGGAGAAGCAACTTGTGGCACTTTATTGCAAAAGCTCCAGGAAATCTGGGATGAGGTTGGTGAAAGTG ACGAGGATCGGGACAAGATGCTCATTCAAATAGAACAAGAGTGCTTGGATGTGTACAAGAAGAAAGTTGAGCAGGCTGCAAAGTCGAGGGTACAGCTTCT TGAGGCCTTATCAGATGCCAAAATTGAACTTGCCCGTCTTCTATCAGCCCTTGGAGAAAAAAGTTTTGCAGGAATTCCTGAGAAGACTTCAGGAACAATC AAGGAACAACTTGCAGCTATAGCACCAGCACTTGAACAGCTGTGGGAACAGAAAGCTGAGAGAGTGAAGGAGTTTTCTGACGTACATTCACAGATTCAGA AGATATGTGGTGAAATTGCTGGGAACTTAAATATCAATGATGCTCCTGCAGTTGATGAAGCTGACTTATCCCTAAAGAAGTTAGATGAATATCATGCCCA ACTTCAAGAGCTTCAAAAGGAAAAGAGTGGTAGGTTGCACAAGGTCCTCGAATTTGTAAGCAGTGTGCATGATCTCTGTGCTGTCCTCGGGATGGACTTC TTCAGTACTGTAACTGATGTTCATCCAAGCTTAATTGACTCAACTGGTGCGCAATCAAAAAGTATTAGCAATGATACATTAGCAAGGCTGGCTAAGACAG TCTTAGCGTTAAAAGAAGATAAGAAGCAAAGGCTTCATAAGCTTCAAGAGCTGACAAATCAACTTATTGATCTGTGGAATCTGATGGATACTCCAATGGA AGAAAGGAAATTGTTCGACCATGTAACCTGTAACATGTTGGCTTCAGTTGATGAAGTGGCTGTCCCAGGAGCTCTGGCGCTGGATCTGATTGAGCAGGCT GAGGTTGAAGTTGAAAGGCTTGATCAATTGAAAGCCAGCAGGATGAAAGAAATTGCCTTCAGAAAACAAGCAGAGCTTGAAGAGATATATGTCCATGCTC ATATAGAGATAGATCCAGAGGCTGCTCGAGAAAAGATTATGACTCTCATTGATTCTGGAAATGTTGAGCCTACTGAGTTACTGGCTGACATGGACAATCA GATATCAAGAGCCAAAGAAGAAGCTCTAAGCAGAAAAGAAATTTTGGATAAGGTTGAGAAATGGATGTCAGCATGTGAGGAAGAGAGTTGGCTAGAAGAC TACAATCGGGATGAAAACAGGTATAATGCAAGCAGAGGTGCACATTTGAATCTCAAACGCGCAGAAAAGGCCCGTATCCTGGTTAACAAAATTCCAGCTT TGGTTGACACCTTGGTTGCCAAAACTCGGGCTTGGGAAGAAGATCGTGGCATACAGTTTGCATATGATGGTGTTCCTCTCCTTGCCATGCTAGATGAATA TGCCATGCTCAGACAGGAAAGAGAAGAAGAGAAGCGGAGAATGAGGGATCAGAAGAAGTTCCATGAGCAGCAAAACACAGAACAAGACGCCATTTTCAGT GCAAGACCTAGTCCTGCTCGACCAGTTGGTACGAAGAAGGTGGTTGGTCCCCGTGCAAATGGCAGTGCTAATGGAACTCCAAGCAGGCGGCTATCTCTAA ATTCTAATCAAAATGGGAGCAGTTCTGCAACTAAAGGTGGAAGGAGGGATAATAGGCTATCTGCCCCTGTTAACTATGTTTCCATATCGAAAGATGATGC TGCCTCTCATTTTTCCGGCACCGACACGGTTTCTGCTTCACCATGA
AA sequence Show only first row Show all	>Potri.001G356500.2 pacid=42791252 polypeptide=Potri.001G356500.2.p locus=Potri.001G356500 ID=Potri.001G356500.2.v4.1 annot-version=v4.1 MAVTDAQNPLVGEATCGTLLQKLQEIWDEVGESDEDRDKMLIQIEQECLDVYKKKVEQAAKSRVQLLEALSDAKIELARLLSALGEKSFAGIPEKTSGTI KEQLAAIAPALEQLWEQKAERVKEFSDVHSQIQKICGEIAGNLNINDAPAVDEADLSLKKLDEYHAQLQELQKEKSGRLHKVLEFVSSVHDLCAVLGMDF FSTVTDVHPSLIDSTGAQSKSISNDTLARLAKTVLALKEDKKQRLHKLQELTNQLIDLWNLMDTPMEERKLFDHVTCNMLASVDEVAVPGALALDLIEQA EVEVERLDQLKASRMKEIAFRKQAELEEIYVHAHIEIDPEAAREKIMTLIDSGNVEPTELLADMDNQISRAKEEALSRKEILDKVEKWMSACEEESWLED YNRDENRYNASRGAHLNLKRAEKARILVNKIPALVDTLVAKTRAWEEDRGIQFAYDGVPLLAMLDEYAMLRQEREEEKRRMRDQKKFHEQQNTEQDAIFS ARPSPARPVGTKKVVGPRANGSANGTPSRRLSLNSNQNGSSSATKGGRRDNRLSAPVNYVSISKDDAASHFSGTDTVSASP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G55230		ATMAP65-1	microtubule-associated protein...		Potri.001G356500 [exp]	0	1
AT1G29470			S-adenosyl-L-methionine-depend...		Potri.002G075800 [exp]	1.00	0.8811
AT5G56590			O-Glycosyl hydrolases family 1...		Potri.018G068600 [exp]	2.44	0.8562
AT3G20260			Protein of unknown function (D...		Potri.008G004400 [exp]	2.44	0.8666
AT3G15380			Plasma-membrane choline transp...		Potri.011G121100 [exp]	4.58	0.8484
AT5G04885			Glycosyl hydrolase family prot...		Potri.008G013500 [exp]	5.47	0.8325
AT2G01930	BBR_BPC	BPC1, BBR/BPC1,...	basic pentacysteine1 (.1.2)		Potri.015G033000 [exp]	12.32	0.7651
AT1G01300			Eukaryotic aspartyl protease f...		Potri.002G171700 [exp]	14.69	0.8042
AT1G10180			unknown protein		Potri.015G119300 [exp]	15.16	0.8496
AT1G70280			NHL domain-containing protein ...		Potri.010G094200 [exp]	17.43	0.8543
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Potri.011G045600 [exp]	19.79	0.7564

Compare expression of checked genes

Potri.001G356500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.