Plant FIBer expression Database

Potri.001G356700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G50730 860 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF03635 Vps35 Vacuolar protein sorting-associated protein 35
Representative CDS sequence
>Potri.001G356700.2 pacid=42787555 polypeptide=Potri.001G356700.2.p locus=Potri.001G356700 ID=Potri.001G356700.2.v4.1 annot-version=v4.1
ATGATGGAATTGAAAGATCAAAGACTTAGAAGTCGAAAATCTGTCTTTCGCATGGAGTTCCGGCGTCGAGATTACAGTGCCGAAGAGCAAGGCCACGTGC
TTCGTCGCTCACGCACCGATCACCATCCTCTTTTACCTCCATCGCCGTCTTTCCACAACCAGGTGGTCGTTGAAAAGAATGGAAATAACGATTTCTTTGA
CCCGCTAAGAGGACTAAACGCTGTGGATTCAACTAGTGCTGAAGAAAAAGCTGCTAATACTACTACTAACAATAACAGTCAAGTTTCATCCAAGGAGTGG
ACTTCTTTCAAGAGATTCTTAATGCAAAAATTTCCAGTCTCCAAAATGATATCAATTGCTTCTATGCCTGATGTGATCATTAAAAGTAGCACATCATTCC
GGAAATCTTCGGAAAGTAGTCATTTAGAGGAAGTGGATGATCCACAAAGGATTTCCCAAGAAGATGTGAAGGTCATTACTGGACAGGAGTATGTCTCACG
ATTACACGAGCTCAAAGATGAAATCAACCGTGCTTGGCATGCTGAAGATCGTGTAACAGCTTTGAAGTTAACTATAAAGGTTGCTAAGCTTTTGATGGAT
ACATCGGTTCTACAGTTTTATCCTACATTATTTGTACTTGCTACAGATGTATTGGACATGCTTGGAGATATGGTATGGAAACGCATCCAGCAGAAAGCTG
AATTTTCAGAAGATGGAACCTTTCTGTGCTCTTTACCAGAGAATTTTAAAGCAAGTGATATTTGCTCTGATGCGAAAGAAACTTGCAATAACTGGTTTTG
CAAAGTTGGTTCAATTCGAGAGCTACTTCCACGCATTTATTTGGAGTTGGCTATATTTCCTTGCTGGCGTTTTCTGGTTGACCAACCTCTAGATAGTCTC
CAGCGCCTCGTTATGATGGCAAGAGGGGTAGTTGATCCATTAGCATCTGCCTACTGCCGTTTGTACATGGCCCACTGTGCAAGGAAGTTGCCTTTGTCTG
ATATAGCAGGGCACCTGGTCACCTGTGTTAATGACACCAAAATTCTATTGATGCGTCATTTATCAGCAAAGGAGGATGGACATTTTGCTGACAAGAAAAG
GTTGCTTGTTAGTCTGATGGAACCAACTATTGAATATATTATGAAATGCATATTTGAGAATACTTCTCAGTCTCAGAGACAAGTAGATTCTGTACTTCTG
GAGTTAGGATTGGGAAGGAATCAAGAAGATTTATGTGGGAGTTCCCCTTGTATCTCATTTGTTCTTCACCATCTACTGAAAGAACTTCCAACTGAAGTAA
TTAGGTCCAATTTTGTGGGTATCCTTCATCTGATTGAGTGCAGCCAAGATCATTATTTCGATCAGTGCTTGAATTACAGGTTACTTGGATTCAGGCTCAG
TGAAAGTAGATCCAAACTAGACATTGTCTACTCAGTAGTGGATAAAGTTATTCAGGCAGTTGCTCAATATGATAGACTTGATCAGTACGTGACGGTTGTG
GATGCTTATATGGACATTGTTCTTCAAAATCAGATGGATAATCATTTGAAAACCATTTTAGAGGGTATTTCAAAGCGAGCATGCCATAAAGAAATACATG
AAGATGAGCTTGAAAGCTTGAAGTCGATTTTGATGAAGCTTCTTTCTCATTTCACAGACTTGCACGATGTACTTGCTTTGGACCATTTTCTTGAAATCTT
AGATGTAATGTATGGGAACCCTAGGAGTAACATCAATATGCATATCCTTAGTATGGCGACAAGGACCGGTTATTTGCGTGATCTGTCAACCATACAGTTG
CTTTTTGAAATTTCTCAGTCTCTACATGATGTTATAGATTTTGGAAGTATGAAAGATGATGAATACCAAAAGCCACTACGGCTGATTTCTCGTTTTGTTG
AGATGGTTGACTATGGGACAGAGATGGAACAACATCTAACGTTTTTAGTTGAATGCCGTGGAGCTTTCGGTATCATAAATGAACTCAAGGAGACTCTAGT
CCATTCAAGCAATTGTTTGGCTATCAAAGCTTTGAAAGATGGAAGAAAGCACCTCAATTTTGTCAAATCTTGCATAGCATTTAGTGAGGTCACAATACCT
TCTGTTTTAGAGCATGTTGTGCAGTTTAATCTTTATATTGAGACCGCTGAGGTTGCTTTATTAGGTGGTTCAGTTTCTCATTCAGATGGCCTGGTGGTTT
CTGCAATAAGCTGCCTAGAATGTTTTGACTTGACAGATGGCTCCAGAACATCAATTGATGCTGGTGGAATGCTCTCATCCATTCAAAAATTATGTAGCCT
CTTGGTTATGTTTCCAGGTAATCCTGACCAAGGCATCACAAGATTTCCAAATAGCATTCTCTCTCTCATTTATTTCAAGTCATGGATGACTCCAAAAATG
AAGATAAGGTTATTTTGTGGGATAATTTTGTTGTTGGCAACACTTTCTCAGGATAAGCTCCCATACTATCCATACTGTGCGGAGATTATGGGCAATGACC
TGTTATTTTTTGGTGATCCGTCCTATGCACATGAAATTGCTGCATTGTCTGAGTGTGTTCTTCAGAATCTCATTAGTTTCATTGAACAAGAGCCCCCAAA
GGCTGCTCGTGGAACCATGGCACTCGAAGCTTGCAACTGCATCGCATCATCTTTTGTGGTATGTCAGGATATATTAGAAGTTTGCTGGAAGCTGATTGAA
ACTGCTAGGTTGTGCCTTAGTGCTGATGACAGGTACTTGCAGTCCACTATCAAATATTTAAACGAGCAGCTGCCTCCATCCTGTAGCAATCTGATATTTG
CACAACACTATGATCTATCAAAATGTTAA
AA sequence
>Potri.001G356700.2 pacid=42787555 polypeptide=Potri.001G356700.2.p locus=Potri.001G356700 ID=Potri.001G356700.2.v4.1 annot-version=v4.1
MMELKDQRLRSRKSVFRMEFRRRDYSAEEQGHVLRRSRTDHHPLLPPSPSFHNQVVVEKNGNNDFFDPLRGLNAVDSTSAEEKAANTTTNNNSQVSSKEW
TSFKRFLMQKFPVSKMISIASMPDVIIKSSTSFRKSSESSHLEEVDDPQRISQEDVKVITGQEYVSRLHELKDEINRAWHAEDRVTALKLTIKVAKLLMD
TSVLQFYPTLFVLATDVLDMLGDMVWKRIQQKAEFSEDGTFLCSLPENFKASDICSDAKETCNNWFCKVGSIRELLPRIYLELAIFPCWRFLVDQPLDSL
QRLVMMARGVVDPLASAYCRLYMAHCARKLPLSDIAGHLVTCVNDTKILLMRHLSAKEDGHFADKKRLLVSLMEPTIEYIMKCIFENTSQSQRQVDSVLL
ELGLGRNQEDLCGSSPCISFVLHHLLKELPTEVIRSNFVGILHLIECSQDHYFDQCLNYRLLGFRLSESRSKLDIVYSVVDKVIQAVAQYDRLDQYVTVV
DAYMDIVLQNQMDNHLKTILEGISKRACHKEIHEDELESLKSILMKLLSHFTDLHDVLALDHFLEILDVMYGNPRSNINMHILSMATRTGYLRDLSTIQL
LFEISQSLHDVIDFGSMKDDEYQKPLRLISRFVEMVDYGTEMEQHLTFLVECRGAFGIINELKETLVHSSNCLAIKALKDGRKHLNFVKSCIAFSEVTIP
SVLEHVVQFNLYIETAEVALLGGSVSHSDGLVVSAISCLECFDLTDGSRTSIDAGGMLSSIQKLCSLLVMFPGNPDQGITRFPNSILSLIYFKSWMTPKM
KIRLFCGIILLLATLSQDKLPYYPYCAEIMGNDLLFFGDPSYAHEIAALSECVLQNLISFIEQEPPKAARGTMALEACNCIASSFVVCQDILEVCWKLIE
TARLCLSADDRYLQSTIKYLNEQLPPSCSNLIFAQHYDLSKC

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G50730 unknown protein Potri.001G356700
[exp]
0 1
AT5G06120 ARM repeat superfamily protein... Potri.003G189500
[exp]
1.00 0.8576
Potri.013G034600
[exp]
1.73 0.8345
AT3G20290 ATEHD1 EPS15 homology domain 1 (.1.2) Potri.001G356300
[exp]
4.24 0.7771
AT1G10130 ATECA3, ECA3 ARABIDOPSIS THALIANA ER-TYPE C... Potri.014G014700
[exp]
4.89 0.8326 Pt-ECA3.3
AT1G09330 ECHIDNA, ECH unknown protein Potri.002G191700
[exp]
6.32 0.7974
AT1G59750 ARF ARF1 auxin response factor 1 (.1.2.... Potri.003G001000
[exp]
6.32 0.8043 Pt-ARF1.11
AT5G46560 unknown protein Potri.001G146500
[exp]
6.70 0.7817
AT5G12370 SEC10 exocyst complex component sec1... Potri.002G164100
[exp]
9.48 0.8184
AT1G49040 SCD1 STOMATAL CYTOKINESIS-DEFECTIVE... Potri.012G060800
[exp]
12.04 0.8211 SCD1.2
AT2G45500 AAA-type ATPase family protein... Potri.014G071900
[exp]
12.12 0.6907

Potri.001G356700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.