Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55100 420 / 5e-133 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.2) AT1G14650 55 / 3e-07 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G070700 [exp] 53 / 1e-06 AT1G14650 810 / 0.0 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2) Potri.005G094600 [exp] 49 / 1e-05 AT1G14650 814 / 0.0 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032646 [exp] 574 / 0 AT5G55100 499 / 3e-164 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.2) Lus10043105 [exp] 546 / 1e-180 AT5G55100 504 / 1e-165 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.2) Lus10025704 [exp] 56 / 7e-08 AT1G14650 346 / 4e-114 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2) Lus10035958 [exp] 56 / 1e-07 AT1G14650 886 / 0.0 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2) Lus10015391 [exp] 51 / 2e-07 AT1G14650 119 / 4e-32 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2) Lus10013966 [exp] 48 / 3e-05 AT1G14650 672 / 0.0 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01805 [poplar] [flax] Surp Surp module
Representative CDS sequence Show only first row Show all	>Potri.001G356800.4 pacid=42790380 polypeptide=Potri.001G356800.4.p locus=Potri.001G356800 ID=Potri.001G356800.4.v4.1 annot-version=v4.1 ATGGATCTGGAAGTGTTTGGCCGCCACGCTCTGCTTTTCGACGACGATACGATGGCGTCTTTCGTCAACTCCACCGATGCACTTGTCGAATGGAACTCTC TCTCCATCGATCGTTACGACGTCCGACATCTCCTTTCCTCTCCCCCGCCGCCTCGCTCTCGCCACCGCCACAAACATTACGACTCTCTTGAATCTGAGCT CGATCACGATCGCTACCTCGATTTAACCTATCCCTCCCTTCCACAAGACTTAGATACAGAGGCAGTTCAGGAGATTGCTGGTGTCTATAATGCGGTTTCT TTTACATATGGAAACCAACACACTGACCAAAAGAATGCTGATACCGAGTCTAGTTTTTGCCCCTCTTTCCCAGTGCCTGAACACTTGGTTCAAAACTTGC CTCCAACAGAGAAGGTGCATCAGATCATTGCAAGAACTGCCATTTTTGTTAGCAAACATGGTGGGCAATCAGAAATTGTTTTGAGGGTCAAACAGGGAGA CAACCCAACTTTTGGGTTCTTGATGCCTGATCATTATCTTCATCCGTACTTTAGGTTTCTTGTTGATCATGAAGAACTTTTGAAGTCTGTCATTGATAGA AAAGCTATAGAAGAAGAAAACAGAATGGAGAATGTGCTTGACCAAACAGGTGGTCCAGCTGGAGCATTGTCATTGCTAGGTTCTATTTATGGTTCTGGAG AGAATGAAGAAGGTGCAACTGAGGATGCCCCAGCTGTTTTAGAAAAGGACCCCAAGGAAGCTGTTAATGCTGATTCTGTGATCATCTCTCCTGGATCAGA AGAAGGCGGTTCTTCTCTAAATTTAGCTGGTAAAGGCAAGGCAAGTTCCAAGCATCCAGTTACTCCTTCAAAAGAAAAGGCTCATTTGGTACGAAGAAAT CGTTCCATCAGTGTAGTTCAGGCTGGAACCACAACTAGGGCGAGGAAAGAAGGTGATTCCTTGGACATGGTTTCCTCTACTGTGGATAAGTTGCAGGCTT CTGATTCATCAAGCCTGTCCAAGGTGGAAACATCTATTTTGGAGCCTCCATCTGATTTGAAGAGGGTGGTTGAGAAGATAGTTGAGTTCATTTTGAGGAA CGGGAAAGAATTTGAGGCTGTTCTTGTCCAGCAGGATACTAAGCATGGAAGGTTCCCATTCCTTCTGCCATCTAACCAATATCATCCCTTCTATCTAAAT GCTCTTCATAAAGCTCAGGAGTCAAGGTCATCTGGCACTGGCTTCATTTCTGAGAAGCTTGATTCCTTGGCGCATGGGATGGGCAGGAAAACAGCACTTG AAAAAAGCGATACCCTCTCATCATCTGATATACCATATGATTGCAATAGGAAAGAGAAGTTTAAAATGGTCATTGGAAAGTCAAAGAAGGATGGACAAGA CCCACCTTCAAAAGCCACCCCACCTCAAGTAGGTGTCAGTGTGGATGCAGCTGCAGCTATTCTTCAGGCTGCCACTAAAGGTGTCAAGAATCCCCGTTTA GAAATACTATCAAAGACATCAATAAATGGCATCATTCAAGGTCCTAACACTGAAAGTGGGACACCCAGTGGCCCTAGCAGCTTGCTTTCCCAGGCTCAAA GTTCCAGCAAAAAGCTTGATCATGGTGAACCTGGGGCTTCTATTCCTGTGGTGAGGGCTATTGCGCAGACAGCTGCTATTGCAGCAGCAAGTGAGGCTGA TTCTTCTGAAGCCAGCTTGACAAGAGAGCAGAAGTTGAAGGCTGAGAGACTGAAACGGGCAAAGATGTTTGCAAGTATGATAAAAAATGGAGGAGCTGCA CCATTAAGGAGTGAATCATCGCGTGGGTTATCTGCAGAACCACCTGAATCTGGGCTCTCTGCTTCAGGCACTCAAATTGTAAACCTCACAGGCTTTGAAA GGGAAGGCAGCTTATGTCAGTTAGATGTTAATACTTCTGATAAAGTTGAGAAGAAAGAATCAGCTGGTGGCCATAACGAGCGACGATCGAAGAGAAAGTA CCGCTCAAGATCTAAAAGAGAAGAAGGAGAAGGGGAAGAAGGGGAATTGGAAGAAATCCGGGATCAGAAACTTGTCAGGAAGAAACAATCTCGTTATAGC TCACATCAGAGTAGCAATAGACGCAAACAAAAAAGAGAGAATACTTTGTCCAAGGAAAAAGATTATCAGCATGTGCACAACCACAATCATACTTCAGATG ATGAGCATGATCATGCTCAAGGTATCTATACTGATGGCGAGCATAAACAGAAGCATTACAGTTCCTCTGATTACGAGAGTAGTCGCCATCAACATGGGTG TAAGCGTAGTTCTCTTGAATCTCATCTTAGGCACTCTCAACACAGGCATAAGCATGATTATTCCTCTGATGATGAGCATAGGCATTCTCGGCATGGGCAT GAACATGATACCTCTTCTGATAACAAGCGCAAGCACTCTCGTCACAAGCGCAAGCACAGTAGTTTCTTAGATGATGAACATAAGCACTCTCGACATAGAA GCAAGGGCGGCAACTCTTCTAACGAACATTTTCAGTATGAGCATAAGCATTGTAGCTCCTCAGATGATGAGGATCTGCATCACAGAAAATCTGTTAAGCA TGTGAAGAAATCTCTCTTGGAAAGAGAAGCTGACTTGGAAGAAGGGGAGATCCTTACAAAATCAGATCAATCAAAAGCAAGTGGGGGTGGAGATGGTGTT AGTAGGGAAGCTTCTGTGGATTTATCAAAATCATACAACGATGTAAGGTCCTCTTCTCGGCCATCTGAAACTACTGAGGTTTCTGATGACCTTAGGGCCA AAATACGGGCCATGTTGATGGCAACCTTGTAA
AA sequence Show only first row Show all	>Potri.001G356800.4 pacid=42790380 polypeptide=Potri.001G356800.4.p locus=Potri.001G356800 ID=Potri.001G356800.4.v4.1 annot-version=v4.1 MDLEVFGRHALLFDDDTMASFVNSTDALVEWNSLSIDRYDVRHLLSSPPPPRSRHRHKHYDSLESELDHDRYLDLTYPSLPQDLDTEAVQEIAGVYNAVS FTYGNQHTDQKNADTESSFCPSFPVPEHLVQNLPPTEKVHQIIARTAIFVSKHGGQSEIVLRVKQGDNPTFGFLMPDHYLHPYFRFLVDHEELLKSVIDR KAIEEENRMENVLDQTGGPAGALSLLGSIYGSGENEEGATEDAPAVLEKDPKEAVNADSVIISPGSEEGGSSLNLAGKGKASSKHPVTPSKEKAHLVRRN RSISVVQAGTTTRARKEGDSLDMVSSTVDKLQASDSSSLSKVETSILEPPSDLKRVVEKIVEFILRNGKEFEAVLVQQDTKHGRFPFLLPSNQYHPFYLN ALHKAQESRSSGTGFISEKLDSLAHGMGRKTALEKSDTLSSSDIPYDCNRKEKFKMVIGKSKKDGQDPPSKATPPQVGVSVDAAAAILQAATKGVKNPRL EILSKTSINGIIQGPNTESGTPSGPSSLLSQAQSSSKKLDHGEPGASIPVVRAIAQTAAIAAASEADSSEASLTREQKLKAERLKRAKMFASMIKNGGAA PLRSESSRGLSAEPPESGLSASGTQIVNLTGFEREGSLCQLDVNTSDKVEKKESAGGHNERRSKRKYRSRSKREEGEGEEGELEEIRDQKLVRKKQSRYS SHQSSNRRKQKRENTLSKEKDYQHVHNHNHTSDDEHDHAQGIYTDGEHKQKHYSSSDYESSRHQHGCKRSSLESHLRHSQHRHKHDYSSDDEHRHSRHGH EHDTSSDNKRKHSRHKRKHSSFLDDEHKHSRHRSKGGNSSNEHFQYEHKHCSSSDDEDLHHRKSVKHVKKSLLEREADLEEGEILTKSDQSKASGGGDGV SREASVDLSKSYNDVRSSSRPSETTEVSDDLRAKIRAMLMATL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G55100			SWAP (Suppressor-of-White-APri...		Potri.001G356800 [exp]	0	1
AT5G62760			P-loop containing nucleoside t...		Potri.015G064600 [exp]	1.00	0.9018
AT3G23900			RNA recognition motif (RRM)-co...		Potri.001G319000 [exp]	1.41	0.8913
AT1G30970	C2H2ZnF	SUF4	suppressor of FRIGIDA4, zinc f...		Potri.003G074200 [exp]	1.73	0.8804
AT5G15270			RNA-binding KH domain-containi...		Potri.004G100201 [exp]	3.74	0.8563
AT1G04080		PRP39	Tetratricopeptide repeat (TPR)...		Potri.014G192800 [exp]	4.00	0.8499
AT3G22590		PHP, CDC73	PLANT HOMOLOGOUS TO PARAFIBROM...		Potri.008G155000 [exp]	5.74	0.7691	PAFE902
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Potri.010G172100 [exp]	6.00	0.8618
AT4G36980			unknown protein		Potri.005G138200 [exp]	6.32	0.8803
AT4G20740		EMB3131	EMBRYO DEFECTIVE 3131, Pentatr...		Potri.003G203100 [exp]	7.34	0.8374
AT1G60200			splicing factor PWI domain-con...		Potri.010G094700 [exp]	10.00	0.8245

Compare expression of checked genes

Potri.001G356800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.