Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	SOYAP4.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11910 800 / 0 ATAPA1, APA1 aspartic proteinase A1 (.1) AT1G62290 766 / 0 Saposin-like aspartyl protease family protein (.1.2) AT4G04460 705 / 0 Saposin-like aspartyl protease family protein (.1.2) AT4G22050 200 / 2e-59 Eukaryotic aspartyl protease family protein (.1) AT1G69100 182 / 1e-52 Eukaryotic aspartyl protease family protein (.1) AT5G43100 52 / 1e-06 Eukaryotic aspartyl protease family protein (.1) AT3G12700 47 / 9e-06 Eukaryotic aspartyl protease family protein (.1.2) AT5G10080 48 / 1e-05 Eukaryotic aspartyl protease family protein (.1) AT5G22850 47 / 3e-05 Eukaryotic aspartyl protease family protein (.1) AT1G08210 46 / 7e-05 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G007600 [exp] 803 / 0 AT1G11910 721 / 0.0 aspartic proteinase A1 (.1) Potri.004G007600 [exp] 803 / 0 AT1G11910 779 / 0.0 aspartic proteinase A1 (.1) Potri.013G002200 [exp] 682 / 0 AT1G11910 622 / 0.0 aspartic proteinase A1 (.1) Potri.002G228300 [exp] 640 / 0 AT1G11910 604 / 0.0 aspartic proteinase A1 (.1) Potri.005G002800 [exp] 620 / 0 AT1G11910 604 / 0.0 aspartic proteinase A1 (.1) Potri.010G003400 [exp] 571 / 0 AT1G62290 548 / 0.0 Saposin-like aspartyl protease family protein (.1.2) Potri.005G144600 [exp] 53 / 4e-07 AT5G43100 729 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G232600 [exp] 52 / 9e-07 AT5G10770 438 / 1e-150 Eukaryotic aspartyl protease family protein (.1) Potri.001G213600 [exp] 50 / 3e-06 AT5G22850 704 / 0.0 Eukaryotic aspartyl protease family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022957 [exp] 828 / 0 AT1G11910 791 / 0.0 aspartic proteinase A1 (.1) Lus10021552 [exp] 825 / 0 AT1G11910 782 / 0.0 aspartic proteinase A1 (.1) Lus10032636 [exp] 806 / 0 AT1G11910 735 / 0.0 aspartic proteinase A1 (.1) Lus10020024 [exp] 744 / 0 AT1G11910 762 / 0.0 aspartic proteinase A1 (.1) Lus10015547 [exp] 725 / 0 AT1G11910 742 / 0.0 aspartic proteinase A1 (.1) Lus10043112 [exp] 677 / 0 AT1G11910 639 / 0.0 aspartic proteinase A1 (.1) Lus10035285 [exp] 614 / 0 AT1G11910 619 / 0.0 aspartic proteinase A1 (.1) Lus10030041 [exp] 551 / 0 AT1G11910 535 / 0.0 aspartic proteinase A1 (.1) Lus10019309 [exp] 59 / 8e-09 AT5G43100 712 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10011513 [exp] 55 / 1e-07 AT5G43100 687 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [poplar] [flax] Peptidase_AA PF00026 [poplar] [flax] Asp Eukaryotic aspartyl protease CL0129 [poplar] [flax] PF03489 [poplar] [flax] SapB_2 Saposin-like type B, region 2 CL0129 [poplar] [flax] PF05184 [poplar] [flax] SapB_1 Saposin-like type B, region 1
Representative CDS sequence Show only first row Show all	>Potri.001G356900.2 pacid=42787734 polypeptide=Potri.001G356900.2.p locus=Potri.001G356900 ID=Potri.001G356900.2.v4.1 annot-version=v4.1 ATGGGAACGATATTGAAACCAGTCGCATCAGCGACGCTTTTCCTATGCTTTCTTCTGTTGCCTATGATTTCCTCTGCGCTTTCGCCGCCGAATGATGGGT TGATTAGAATCGGACTGAAGAAGAGGAAATATGAACGGAACAACCGATTGGCTGCCAAGCTTGAGTCCAAGGAAGGAGAGTCTATTAAAAAGTACCATCT TCTTAGGAATTTAGGAGGAGATGCAGAGGATACTGATATTGTTTCGCTAAAGAATTACATGGATGCTCAGTACTTTGGGGAGATTGGTATTGGGACTCCC CCACAAAAGTTCACTGTAATATTTGACACTGGGAGTTCTAATCTCTGGGTTCCTTCTTCCAAGTGCTATTTCTCTGTTGCTTGTTATTTCCACTCCAAGT ACAAGTCAAGCCATTCGCGCACCTACAAGGAAAATGGAAAATCAGCAGAGATCCACTATGGAACTGGAGCTATTTCTGGCTTCTTTAGCCAAGACCATGT AAAAGTTGGTGATCTCGTGGTTAAGAATCAGGAATTTATTGAAGCTACCAGGGAGCCCAGCGTCACCTTTCTGGTGGCCAAGTTTGATGGCATTCTTGGA CTTGGATTTCAAGAAATTTCGGTTGGAAAGGCTGTACCTGTGTGGTACAACATGGTTGAGCAGGGTCTTGTTAAAGAGCCAGTTTTTTCATTCTGGTTTA ACCGCAATGCTGATGAAAAAGAAGGGGGTGAAATTGTTTTTGGTGGGGTAGATCCTGATCATTACAAGGGTGAGCACACATATGTCCCTGTGACGCAGAA AGGATATTGGCAGTTTGACATGGGTGATGTCTTGATTGGTGGTCAAACTTCTGGATTTTGTGCCAGTGGCTGTGCAGCAATTGCTGATTCTGGAACCTCT TTGTTAGCTGGTCCTACGACTATTATTACTGAAGTGAACCATGCAATTGGAGCCACTGGAGTTGTTAGTCAAGAGTGCAAGGCAGTTGTTGCTCAATATG GAGACACCATAATGGAGATGCTTTTAGCAAAGGACCAACCGCAAAAAATTTGCGCACAAATTGGTTTGTGCACATTTGACGGGACACGAGGTGTAAGTAT GGGCATTGAGAGTGTAGTGAATGAGCATGCTCAGAAGGCATCAGATGGTTTTCATGATGCAATGTGCTCTACTTGTGAGATGGCTGTTGTGTGGATGCAG AACCAACTTAAGCAGAATCAAACACAAGAGCGCATTCTTGACTATGTCAATGAGCTATGTGAACGACTGCCCAGTCCTATGGGAGAATCAGCTGTTGATT GTGATGGTTTGTCTTCCATGCCTAATGTTTCATTTACAATTGGTGGAAGGGTTTTTGAACTTAGCCCTGAGCAGTATGTCCTCAAAGTTGGCGAGGGAGA TGTAGCCCAATGCATTAGTGGATTCACAGCACTGGATGTACCACCACCTCGCGGTCCTCTCTGGATCTTGGGTGATGTCTTTATGGGTAGCTTCCACACA GTATTCGATTATGGCAATATGAGAGTTGGATTTGCTGAAGCTACTTAG
AA sequence Show only first row Show all	>Potri.001G356900.2 pacid=42787734 polypeptide=Potri.001G356900.2.p locus=Potri.001G356900 ID=Potri.001G356900.2.v4.1 annot-version=v4.1 MGTILKPVASATLFLCFLLLPMISSALSPPNDGLIRIGLKKRKYERNNRLAAKLESKEGESIKKYHLLRNLGGDAEDTDIVSLKNYMDAQYFGEIGIGTP PQKFTVIFDTGSSNLWVPSSKCYFSVACYFHSKYKSSHSRTYKENGKSAEIHYGTGAISGFFSQDHVKVGDLVVKNQEFIEATREPSVTFLVAKFDGILG LGFQEISVGKAVPVWYNMVEQGLVKEPVFSFWFNRNADEKEGGEIVFGGVDPDHYKGEHTYVPVTQKGYWQFDMGDVLIGGQTSGFCASGCAAIADSGTS LLAGPTTIITEVNHAIGATGVVSQECKAVVAQYGDTIMEMLLAKDQPQKICAQIGLCTFDGTRGVSMGIESVVNEHAQKASDGFHDAMCSTCEMAVVWMQ NQLKQNQTQERILDYVNELCERLPSPMGESAVDCDGLSSMPNVSFTIGGRVFELSPEQYVLKVGEGDVAQCISGFTALDVPPPRGPLWILGDVFMGSFHT VFDYGNMRVGFAEAT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Potri.001G356900 [exp]	0	1	SOYAP4.1
AT1G16180			Serinc-domain containing serin...		Potri.003G186500 [exp]	2.44	0.7129
AT5G17010			Major facilitator superfamily ...		Potri.019G055600 [exp]	3.46	0.6941
AT4G33940			RING/U-box superfamily protein...		Potri.004G143900 [exp]	6.70	0.6423
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Potri.010G070750 [exp]	7.48	0.6820
AT4G39090		EMB3005, RD19A,...	RESPONSIVE TO DEHYDRATION 19A,...		Potri.004G160300 [exp]	8.83	0.6660	RD19.3
AT3G27020		YSL6	YELLOW STRIPE like 6 (.1)		Potri.001G327300 [exp]	9.16	0.6608
AT5G01960			RING/U-box superfamily protein...		Potri.016G141200 [exp]	12.48	0.6247
AT1G08800			Protein of unknown function, D...		Potri.019G012200 [exp]	13.85	0.6431
AT5G18120		ATAPRL7	APR-like 7 (.1)		Potri.019G035700 [exp]	16.97	0.6255
AT3G19640		MRS2-3, MGT4	magnesium transporter 4 (.1)		Potri.009G086300 [exp]	18.70	0.5444

Compare expression of checked genes

Potri.001G356900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.