Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30440 971 / 0 Phototropic-responsive NPH3 family protein (.1) AT5G03250 659 / 0 Phototropic-responsive NPH3 family protein (.1) AT3G44820 572 / 0 Phototropic-responsive NPH3 family protein (.1) AT5G13600 565 / 0 Phototropic-responsive NPH3 family protein (.1) AT5G66560 524 / 2e-179 Phototropic-responsive NPH3 family protein (.1) AT3G50840 455 / 1e-153 Phototropic-responsive NPH3 family protein (.1) AT5G64330 459 / 6e-153 JK218, RPT3, NPH3 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) AT5G48800 414 / 2e-137 Phototropic-responsive NPH3 family protein (.1) AT3G08570 370 / 5e-120 Phototropic-responsive NPH3 family protein (.1) AT1G03010 358 / 2e-115 Phototropic-responsive NPH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G091100 [exp] 1155 / 0 AT1G30440 924 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.010G223600 [exp] 694 / 0 AT5G03250 683 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.008G038600 [exp] 694 / 0 AT5G03250 723 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.016G090400 [exp] 676 / 0 AT5G03250 768 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.009G150500 [exp] 594 / 0 AT3G44820 826 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.004G189800 [exp] 593 / 0 AT3G44820 835 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.005G130700 [exp] 543 / 0 AT5G66560 733 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.007G033900 [exp] 541 / 0 AT5G66560 789 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.017G048200 [exp] 480 / 3e-162 AT5G64330 993 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023274 [exp] 974 / 0 AT1G30440 910 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10038531 [exp] 974 / 0 AT1G30440 915 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10023523 [exp] 635 / 0 AT5G03250 667 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10040409 [exp] 633 / 0 AT5G03250 667 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10015871 [exp] 619 / 0 AT5G03250 666 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10009292 [exp] 608 / 0 AT5G03250 670 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10013799 [exp] 585 / 0 AT5G03250 672 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10026511 [exp] 561 / 0 AT5G03250 665 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10019522 [exp] 556 / 0 AT3G44820 781 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10037432 [exp] 540 / 0 AT5G66560 747 / 0.0 Phototropic-responsive NPH3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [poplar] [flax] POZ PF00651 [poplar] [flax] BTB BTB/POZ domain CL0033 [poplar] [flax] PF03000 [poplar] [flax] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Potri.001G357100.1 pacid=42788932 polypeptide=Potri.001G357100.1.p locus=Potri.001G357100 ID=Potri.001G357100.1.v4.1 annot-version=v4.1 ATGGCTTGCATGAAACTGGGTTCCAAAAATGATGCTTTTCAAAAACAAGGGCAGGCCTGGTTCTGCACAACCGGGCTTCCCAGTGATATTGTTGTTGAAG TTGAGGAGATTTCCTTCCATCTTCACAAGTTTCCTTTGCTTTCTAGAAGTGGGGTTATGGAAAGGTTGATTGCAGAAGCATCGGAAGAAGGAGATAAAAA ATGTGTCATAAGTCCCCCTAAGATTCCTGGTGGGGCCAAAACATTTGAGCTCGTGGCCAAGTTCTGCTATGGGGTGAAACTTGAACTTACAGCCTCAAAT GTTGTGTATCTTCGTTGTGCTGCCGAGCATCTTGAAATGACCGAGGAATACGGGGAGGGAAATCTAAGTACACAGACTGAGACATTTTTAAACCAAGTTG TCCTTCGTAATTGGAAAGACTCTCTAAAAGCACTGCAAACATGTGATGATATTCTTCCCCATGCTGAAGAACTACATGTTACTAGGAGGTGCCTTGAGTC ACTAGCCACAAAGGCTTGTACTGACCCAAATCTCTTTGGTTGGCCGATGATGGAACGTGGACCCATGCAGAGCCCTGGGGGAAGTGTCATGTGGAATGGG ATAAGCACAGGAGCTAGACCAAAACATTCAAATTCAGATTGGTGGTACGAGGATGTATCCACTTTAAGTTTACCTCTGTATAAGAGGCTGATTTCCATTA TGGAATCTCATGGAAACAGACAGGAGCTTCTTGCTGGATCCCTTGCCTACTATGCAAAAAAGTACCTCCATGGGCTATATCGGCGTCAAGGTGCCAATGA AACTACCTCCTGTTTAATGCCCATGACTTCGGGGGCTTCACCATCAGAAAAAGAGCAGAAGGTTTTGCTGGAAGAGATTGATCAATTACTTCCAGTGCAA AAGGGTCTAGTTCCAACCAAGTTTTTGTTTGGTCTTCTCCGGACAGCATTGATTCTAAAATCAAACCCCTCTTGTTTGGCAAACTTGGAAAAGAGAATCG GGATGCAGCTTGAGCAAGCAACACTTGAAGATCTTTTGATGCCCAGTTTCTCTTATTCCATGGAGACACTTTACAATGTTGATTCTGTGCAGCGGATTCT TGAGCACTTCCTTGCCATGGATCAAATTACAGGTGGATCCTCTCCCTGTTCAATTGAGGATGGACAGTTGATTGGATCGCCATCACTGACGCCAATCACA ACGGTAGCCAAGCTGATTGATGGCTACCTTGCAGAGGTTGCCCCTGATGTTAATTTGAAGCTCCCCAAGTTCCAGGCTCTTGCTGCTGCTGTTCCTGAGT ATGCAAGGCCCTTAGATGATGGTCTTTACCGTGCAATAGACATTTATCTGAAGTCGCACCCATGGTTGGCAGAGTCTGACAGAGAACAGCTCTGCAGGTT GATTGATTGCCAGAAGCTCTCCTTGGAAGCTTGTACTCATGCTGCCCAGAATGAGAGGCTTCCCCTAAGAATAATAGTCCAAGTTCTCTTCTTTGAGCAG CTTCAATTAAGGACTTCCATTGCTGGCTGCTTTCTGGTTTCTGACAATCTTGATGGATCAAGACAATTGAGAAGTGGCTTTGCCGGGTCAACTGATGGTG GCTGGGCTACAGCTGTTAGAGAGAATCAAGTTTTGAAGGTGGGAATGGATAACATGAGAACGAGGGTTTTTGAGCTTGAGAAGGAGTGTTCGAGCATGAG ACATGAGATTGAGAAATTGGGTCGCACCAAGGTTTCTAGCACTTGGGGAAATGTGTCAAAGAAATTTGGATTTAAGATGAAGTCTCAGATGTGTAGTGCT CAAGAAGGGTCTGTTAGCAAGCAGAATAATGGAAGTGCCAAGTTTGAGAAGGCCAAGGATAGACATGGAAAGCACAAGAAAAACTCTTCTTAA
AA sequence Show only first row Show all	>Potri.001G357100.1 pacid=42788932 polypeptide=Potri.001G357100.1.p locus=Potri.001G357100 ID=Potri.001G357100.1.v4.1 annot-version=v4.1 MACMKLGSKNDAFQKQGQAWFCTTGLPSDIVVEVEEISFHLHKFPLLSRSGVMERLIAEASEEGDKKCVISPPKIPGGAKTFELVAKFCYGVKLELTASN VVYLRCAAEHLEMTEEYGEGNLSTQTETFLNQVVLRNWKDSLKALQTCDDILPHAEELHVTRRCLESLATKACTDPNLFGWPMMERGPMQSPGGSVMWNG ISTGARPKHSNSDWWYEDVSTLSLPLYKRLISIMESHGNRQELLAGSLAYYAKKYLHGLYRRQGANETTSCLMPMTSGASPSEKEQKVLLEEIDQLLPVQ KGLVPTKFLFGLLRTALILKSNPSCLANLEKRIGMQLEQATLEDLLMPSFSYSMETLYNVDSVQRILEHFLAMDQITGGSSPCSIEDGQLIGSPSLTPIT TVAKLIDGYLAEVAPDVNLKLPKFQALAAAVPEYARPLDDGLYRAIDIYLKSHPWLAESDREQLCRLIDCQKLSLEACTHAAQNERLPLRIIVQVLFFEQ LQLRTSIAGCFLVSDNLDGSRQLRSGFAGSTDGGWATAVRENQVLKVGMDNMRTRVFELEKECSSMRHEIEKLGRTKVSSTWGNVSKKFGFKMKSQMCSA QEGSVSKQNNGSAKFEKAKDRHGKHKKNSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G30440			Phototropic-responsive NPH3 fa...		Potri.001G357100 [exp]	0	1
AT2G37080		RIP3	ROP interactive partner 3 (.1)		Potri.006G131400 [exp]	4.47	0.7976
AT3G44200		IBO1, ATNEK6	"NIMA \(never in mitosis, gene...		Potri.009G020100 [exp]	4.58	0.8169
AT2G34710	HD	ATHB14, PHB-1D,...	PHABULOSA 1D, PHABULOSA, ARABI...		Potri.011G098300 [exp]	13.41	0.7561	Pt-PHB.1
AT2G29890		ATVLN1, VLN1	villin 1, villin-like 1 (.1.2....		Potri.009G045000 [exp]	22.84	0.7646	VLN1.1
AT5G05170		IXR1, CEV1, ATH...	ISOXABEN RESISTANT 1, CONSTIT...		Potri.006G052600 [exp]	26.19	0.7228	CESA4.1
AT1G67690			Zincin-like metalloproteases f...		Potri.010G054466 [exp]	28.77	0.7252
AT2G45530			RING/U-box superfamily protein...		Potri.001G452800 [exp]	28.91	0.6981
AT5G65930		PKCBP, ZWI	POTATO KINESIN-LIKE CALMODULIN...		Potri.001G455300 [exp]	31.85	0.7521
AT5G27950			P-loop containing nucleoside t...		Potri.013G033900 [exp]	31.98	0.7037
AT3G26935			DHHC-type zinc finger family p...		Potri.003G160600 [exp]	33.67	0.7090

Compare expression of checked genes

Potri.001G357100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.