Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20330 551 / 0 PYRB PYRIMIDINE B (.1) AT1G75330 87 / 8e-19 OTC ornithine carbamoyltransferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G229400 [exp] 100 / 2e-23 AT1G75330 561 / 0.0 ornithine carbamoyltransferase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013346 [exp] 591 / 0 AT3G20330 547 / 0.0 PYRIMIDINE B (.1) Lus10010641 [exp] 99 / 9e-23 AT1G75330 547 / 0.0 ornithine carbamoyltransferase (.1) Lus10033203 [exp] 97 / 3e-22 AT1G75330 546 / 0.0 ornithine carbamoyltransferase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0399 [poplar] [flax] Asp-glut_race PF00185 [poplar] [flax] OTCace Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CL0399 [poplar] [flax] PF02729 [poplar] [flax] OTCace_N Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
Representative CDS sequence Show only first row Show all	>Potri.001G357200.1 pacid=42793088 polypeptide=Potri.001G357200.1.p locus=Potri.001G357200 ID=Potri.001G357200.1.v4.1 annot-version=v4.1 ATGAGGCTTGCGATCCACCCCCCACGCGCCGGCATCCTGAGCGGAAGCTCACCGCCGGCGACAGTACTTGGCTGGAACGTGCAAGCCACCCGCCACCAGC CCTTCAGCTTGGCTTCGACTGTTTTTGGAGTATCTAGACAGAGTGGAAGGTTGTCAACGAGGAGTAGAATCCATAGCCAATTATTAGGAATTCAGAATAC ACCTTCGTTTTCTGCTGGGAAAAAGTTTCAACTTGATGATTTGATTGAGGCTCAGCAGTTTGATAGGGAAATTCTAGCTGATATATTTGAAGTTGCTCAT GAGATGGAAAAGGTTGAGAAGAATTCTCCTGGGAGTCAAGTCCTTAAGGGGTATTTAATGGCTACTCTTTTTTATGAGCCTTCTACTCGTACCAGGCTTT CTTTTGAGTCTGCGATGAAAAGGCTAGGTGGTGAAGTTTTGACAACTGAAAATGCGAGGGAGTTTTCGTCCGCAGCCAAGGGAGAGACTCTTGAGGATAC TATTAGAACTGTTGAAGGCTATTCGGATATTATTGTAATGCGCCATTTTGAAAGTGGTGCTGCTAAAAGAGCTGCAGCAACAGCTGAAGTTCCTGTTATC AATGCAGGAGATGGTCCTGGACAACATCCCACTCAGGCTCTTCTGGATGTATACACTATTGACAGAGAGATAGGGAAACTGGATGGTATTAAAGTTGCAC TTGTGGGAGATCTTGCTAATGGGAGGACAGTCCGCTCGCTTGCCTATTTGCTTGCCAAATACCAAGATGTGAAGATATACTTTGTCTCTCCTGATGTGGT AAAAATGAAGGATGACATAAAAGACTATCTGACATCAAAAAGAGTTGAATGGGAAGAAAGTGCTGATCTAATGGAAGTTGCTTCAAAGTGTGATGTTTTA TATCAAACTCGTATTCAGCGAGAACGGTTTGGGAAGAGAATTGACCTTTATGAAGAAGCTCGGGGAAAGTACATTGTGGATCATGATGTGTTAAATGTGA TGCAGAATCATGCTGTGGTCATGCATCCTCTCCCCAGGCTAGACGAGATAACTGTTGATGTTGATGCTGATCCAAGGGCTGCATATTTTAGGCAAGCGAA GAATGGTCTCTATATCAGAATGGCTCTCTTGAAACTTCTACTTGTTGGGTGGTGA
AA sequence Show only first row Show all	>Potri.001G357200.1 pacid=42793088 polypeptide=Potri.001G357200.1.p locus=Potri.001G357200 ID=Potri.001G357200.1.v4.1 annot-version=v4.1 MRLAIHPPRAGILSGSSPPATVLGWNVQATRHQPFSLASTVFGVSRQSGRLSTRSRIHSQLLGIQNTPSFSAGKKFQLDDLIEAQQFDREILADIFEVAH EMEKVEKNSPGSQVLKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSSAAKGETLEDTIRTVEGYSDIIVMRHFESGAAKRAAATAEVPVI NAGDGPGQHPTQALLDVYTIDREIGKLDGIKVALVGDLANGRTVRSLAYLLAKYQDVKIYFVSPDVVKMKDDIKDYLTSKRVEWEESADLMEVASKCDVL YQTRIQRERFGKRIDLYEEARGKYIVDHDVLNVMQNHAVVMHPLPRLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLLVGW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G20330		PYRB	PYRIMIDINE B (.1)		Potri.001G357200 [exp]	0	1
AT2G44640			unknown protein		Potri.014G044200 [exp]	1.00	0.9370
AT1G75330		OTC	ornithine carbamoyltransferase...		Potri.005G229400 [exp]	7.07	0.8661
AT1G47720		OSB1	Organellar Single-stranded, Pr...		Potri.005G218100 [exp]	9.05	0.8693
AT3G27740		VEN6, CARA	VENOSA 6, carbamoyl phosphate ...		Potri.003G080900 [exp]	9.79	0.8836	Pt-CARA.2
AT4G20440		SMB	small nuclear ribonucleoprotei...		Potri.011G155700 [exp]	12.60	0.8655
AT4G21720			unknown protein		Potri.004G041700 [exp]	13.34	0.8524
AT5G08540			unknown protein		Potri.010G254800 [exp]	13.78	0.9115
AT5G24020		ARC11, ATMIND1,...	ACCUMULATION AND REPLICATION O...		Potri.004G080100 [exp]	16.79	0.8981	Pt-MIND.1
AT4G33760			tRNA synthetase class II (D, K...		Potri.009G084300 [exp]	17.32	0.8994
AT1G10522			unknown protein		Potri.010G094900 [exp]	18.89	0.9096

Compare expression of checked genes

Potri.001G357200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.