Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34680 2236 / 0 AIR9 AUXIN-INDUCED IN ROOT CULTURES 9, Outer arm dynein light chain 1 protein (.1) AT5G19680 61 / 4e-09 Leucine-rich repeat (LRR) family protein (.1) AT1G78230 56 / 3e-07 Outer arm dynein light chain 1 protein (.1) AT4G03260 54 / 1e-06 Outer arm dynein light chain 1 protein (.1.2) AT5G22320 47 / 0.0001 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) AT2G26330 47 / 0.0002 QRP1, ER QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1) AT1G62440 46 / 0.0003 LRX2 leucine-rich repeat/extensin 2 (.1) AT1G17240 45 / 0.0004 AtRLP2 receptor like protein 2 (.1) AT1G64210 44 / 0.0008 Leucine-rich repeat protein kinase family protein (.1) AT2G33080 44 / 0.0008 AtRLP28 receptor like protein 28 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G090200 [exp] 1645 / 0 AT2G34680 1307 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 9, Outer arm dynein light chain 1 protein (.1) Potri.011G090150 [exp] 993 / 0 AT2G34680 840 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 9, Outer arm dynein light chain 1 protein (.1) Potri.019G119300 [exp] 57 / 1e-07 AT4G03260 549 / 0.0 Outer arm dynein light chain 1 protein (.1.2) Potri.005G164000 [exp] 57 / 1e-07 AT1G78230 464 / 2e-155 Outer arm dynein light chain 1 protein (.1) Potri.002G097800 [exp] 56 / 2e-07 AT1G78230 523 / 3e-178 Outer arm dynein light chain 1 protein (.1) Potri.019G119500 [exp] 55 / 6e-07 AT4G03260 521 / 3e-177 Outer arm dynein light chain 1 protein (.1.2) Potri.018G086200 [exp] 52 / 2e-06 AT5G19680 486 / 5e-174 Leucine-rich repeat (LRR) family protein (.1) Potri.006G163900 [exp] 51 / 4e-06 AT5G19680 513 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.004G199200 [exp] 50 / 9e-06 AT5G22320 354 / 2e-118 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038534 [exp] 1508 / 0 AT2G34680 1378 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 9, Outer arm dynein light chain 1 protein (.1) Lus10023270 [exp] 1488 / 0 AT2G34680 1368 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 9, Outer arm dynein light chain 1 protein (.1) Lus10018514 [exp] 59 / 3e-08 AT4G03260 509 / 1e-172 Outer arm dynein light chain 1 protein (.1.2) Lus10012715 [exp] 58 / 3e-08 AT5G19680 458 / 2e-163 Leucine-rich repeat (LRR) family protein (.1) Lus10010891 [exp] 56 / 5e-08 AT5G19680 384 / 3e-135 Leucine-rich repeat (LRR) family protein (.1) Lus10039729 [exp] 57 / 9e-08 AT4G03260 429 / 2e-142 Outer arm dynein light chain 1 protein (.1.2) Lus10005198 [exp] 56 / 2e-07 AT5G22320 318 / 9e-105 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Lus10000228 [exp] 56 / 3e-07 AT3G05370 231 / 3e-66 receptor like protein 31 (.1) Lus10033444 [exp] 55 / 4e-07 AT1G78230 450 / 8e-151 Outer arm dynein light chain 1 protein (.1) Lus10020932 [exp] 54 / 8e-07 AT1G78230 448 / 1e-149 Outer arm dynein light chain 1 protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G357700.3 pacid=42788644 polypeptide=Potri.001G357700.3.p locus=Potri.001G357700 ID=Potri.001G357700.3.v4.1 annot-version=v4.1 ATGGAGGAACCACTAGGTGACGAGGGGGCTAGAAAGGCCCCGACTTCAGAGAGACAGAAGCAGCAGTCCTCTGTTAGCTCAGTGGAAACTTCCATGAAGG TTTCCAAAACCACGAAACCTACCATTTCAGCCACCTCAAATCTCTCGGCACCAAAGAGGAGTAAACCGAAGAACACTTCGGATTCAATTTCAAATGTGAC CACCACAACTGCATCCTCCCGCAAAACCAGTTCAGTTCCAGTCACAAGAAGAAACAGCACTGGAGGGGCTCCTGAGAAGCTATCCGTCTCTGCAACGAAA CTCCAAAATACTACTACAGGTTCTGGCGGAAAGACGAATGCTGTTTCAGATCCAGTGAAACAGTCCCTTCCACAGCTTAGAAGGAGTTCCTTGCCTTCCG CAAAACCCACGATTCGAACTAGTAGTGTTTCCGAGGCTAGGAAGTCAGTTCCCATGGATAAGAGCTTGAGAACATCAATTGGGTCGGGTGTACGTAAGCC AGAGACAGTCAAGAAATCTTCAGTTAAGCCAGCATTGTCGGTCTCTTCTTCTTCTTCTTCGAGAAGACTTACTTCTTCATCACTGGACAGTACTGGCAGT AGCATGAGCAGGAAGACAATTTCTAAGCTTTCTTCACCATCTGCTCGCTCCCCTTCCAGTTCCAGTGGTTTGAGAGCCGGTTCCCTGTCAATTTCTCTGG ACAGGAGTTCTAATTTGTCTGGTCGGAGAAGAGCAGGTACTCCTGAAAGCCGGGATTCTCGCTTCATTATTCTTCCACAGGTGGAGATTAATAAAGCTGG AGATGATGTGAGATTGGATCTTAGGGGACACAAAGTTCGTAGTCTTAATGCGAGTGGGTTGAACTTAACACAAAATCTAGAGTTTGTTTATCTCAGAGAC AATCTCCTTCATACATTGGAAGGAATTGAGATACTGAAGCGTGTGAAGGTCCTTGATTTGAGTTTCAATGAGTTCAAGGGGCCTGAGTTTGAACCTCTTG AGAATTGCCAGGCCCTTCAGCAACTCTATCTTGCTGGGAATCAAATCACGTCACTTGTAAGCCTTCCTCAGCTTCCTAACCTGGAGTTTCTTTCGGTTGC TCAAAATAAGTTAAGGTCTCTGTCAATGGCTGGCCAACCTCGACTACAGGTATTAGCTGCCAGCAAAAACAAAATAACAACTCTGAAGAGCTTCCCACAT CTACCAGTCCTTGAGCATTTGCGAGTGGAGGAGAATCCTATACTTAAGATGCCCCATTTAGAAGCAGCCTCAATTTTGCTTGTTGGTCCTACCTTGAAAA AGTTTAATGATAGAGATCTTTCCCGAGAAGAGGTTGCAATTGCAAAACGTTACCCAGCATGCACAGCGTTGTGCATTAGATATGGTTGGGAGCTTTGTCG CCCTGAGAAAGCAGCAGATTCAACTTTTTGCTTTCTATATGAGCAATGGAAAGAGCATTTCCCTCCAGGCTATCTGCTCAAAGATGCGTTGGTAGATCAA CCTTTTGAAGAAGACGCTTGCCACTGCCACTTTGTTTTTGTTCAAGACAACAATCTAAGTGCCGATCCACAGTTAGTCTTAAAGTATCAATGGTTTGTGG AAGAAAGAGCACTTTCAAGCTTTTCTGCTATCCCTGATGCCACTGGAGAGGTATACTGGCCAAAGCATGAAGACATCGGTAAATTTCTGAAAGTGGAATG TACTCCCATAATGGGAGAAATAAAGTATCCTCCTGTTTTTGCCATATCTTCACAAGTTTCACCTGGAAATGGAATTCCAAAGGTTGTGAACCTTGAAGTG CAAGGAGAGTTGGTGGAAGGAAATGTTGTCAAAGGCTATGCTGAGATTGCATGGTGTGGGGGGACTCCGGGGAAAGGTGTTGCAAGTTGGCTGAGGAGAA GATGGAATAGCAGCCCGACGGTTATTGCTGGAGCAGAAGATGAGGGGTATCGTTTAACTCTAGATGACATTGATTCAAGTGTGGTTTTTATGTACACACC AGTCACAGAAGAAGGAGCCAAAGGGGAACCTCACTATAAATATACTGATTTTGTTAAAGCAGCTCCTCCATCAGTCAGTAATGTTCGAATTATTGGAGAT GTTGTTGAAGGAAATATCGTGAAAGGAGTTGGGAATTACTTTGGGGGGAAAGAAGGTCCTAGCAAGTTTGAATGGTTACGTGAGAATAAGAACACTGGAG ATTTTGTATCCATATCAACTGGTACATCTGAGTATGCTTTGACCAATGAGGATGTTGGGGGACGCTTAGCTTTTGTGTATTCACCCATTAATTTTGAAGG ACAGGAAGGGGAATCTGTTACAATATTGTCTCTCCCAGTGAAGCGAGCTCCTCCAAAAGTAAAGAATGTGAAGATAATTGGTCATTTACGAGAAAACAGT AAGGTCACTGTAACTGGAACTGTTACTGGAGGAACTGAAAGTTCTAGCAGAGTTCAGTGGTTTAAAACTAGTTCTTCGACGTTGGATGGTGAGAATAGTC TAGATGCATTGAGCACTGCAAAAATTGCAAAGGCATTCCGCATACCCTTAGGAGCAGTTGGCTATTACATTGTTGCGAAATATACTCCTATGACTCCAGA TGGTGAATCTGGAGAACCAGCATATGCTATATCAGAAAAAGCAGTTGAGACTCTTCCTCCAAGCCTAAATTTCTTATCAATTTCGGGCGACTACATTGAA GGTGGACTATTGACGGCATCATATGGCTATGTAGGTGGTCATGAAGGAAAAAGTGAATATAATTGGTATCTTCATGAGTTTGAAAGTGATACCGGATCCT TGATACTCGAGGGTTCTGGAGTTCTTCAATGTCGTGTTACTAGAGATGCAATTGGTAAATTTATATCTTTTCAGTGCGTTCCAGTTCGTGATGATGGAAT AGTAGGCGAGCCAAGAACTTGCATGGGGGTAGAACGTGTTCGACCAGGAAGTCCAAGACTGCTTTCTCTACAAATAGTTGGAACTGCTATTGAAGGAACT ATGCTAACTGTTGACAAAAAATATTGGGGAGGGCAAGAGGGGAATTCGGTTTTCCGTTGGTTTCGGACTAGTTCAGATGGCACTCAAATTGAAATTCGAG GTGCCACTACTGCATCATACGTGCTTTTAGTTGATGACATTAGCTGCTTTGTCTCGGTTTCTTGTGAGCCTGTGAGAAGTGACTGGGCCCGTGGTCCTAT AGTACTTTCTGAACAGATGGGACCTATTATACCTGGTCCTCCAAATTGCCAATCATTGGAGTTTCTAGGATCAATGTTGGAAGGACAACGTTTGAGCTTT GTTGCATCTTACAGTGGAGGAGAGAGGGGGAACTGCTTCCACGAATGGTTTAGAGTGAAAAGTGGTGATATCAAGGAGAAATTAAGTGAAGATGAGTTTC TTGATTTGACTTTAAAGGATGTCGGTAAACACATTGAACTTGTTTACACTCCAATTCGCAAAGATGGTGCAAAAGGAAGCTCTCAGACCATATTATCTAA TGTGATTGCACCTGCTGATCCAGTGGGATTGGAACTTGTGATTCCTTCTTGCTACGAGGACAAGGAAGTTACCCCGCAAAAAACATACTTTGGTGGACAG GAAGGTGCTGGAGAGTATATTTGGTTCCGAACAAGGAACAAGCTAAATAAATCTGAATTGTTGGATATAGCAAATGCTGGTGATCATGTTCTTATATGTG GTAAAACCCTGGCATATACTCCATCAATTGAAGATGTGGGAGCTTATTTGGCTCTGTACTGGCTGCCTACTCGTGCAGATGGCAAGTGTGGAAAGCCTTT GGTCTCAATTTCCAACTCTCCAGTTAACCCTGCTCTTCCGGTAGTTTCTAATGTTCATGTGAAGAAGCTGCCTTCGGGTGTTTATGCTGGAGAAGGAAAG TATTTCGGTGGGCATGAGGGATTGAGCCTCTTCAGCTGGTATAGAGAGACAAACGATGGAGCTATCATTCTTATTGAGGGAGCAACCTATAGAACTTATG AGGTCACAGATTCAGATTACAATTGCCGTTTATTGTTTGGATACACACCTGTTCGTTCAGATTCAGTTGTCGGTGAGCTTAAGTTGTCTGAGCCAACTGG CCTTGTTCTCCCAGAACTTCCAAAAGTGGAGATGGTTTCTCTCACTGGCAAGGCAATCGAAGGTGATGTACTTACTGCTGTTGAAGTGATCCCAAAGAGT GAAACCCAGCAATGTGTTTGGAGCAAGTACAAGAAAGAAGTCAGATATCAATGGTTCTGCTCATCAGTGTCAGGGGATAGCAACTCTTTTGAGCACTTGC CTGCACAACGCTCCTGCTCTTACAAGTTGCGGCTAGAGGACATTGGTAGATGCTTCAAATGTGAATGTGTTGTGACTGATGTCTTTGGAAGGTCAAGTGA GCCAGCATATGCTGAGATTGGTCCTGTATTGCCAGGGATACCTAGAATAGCTAAGTTGGAGATTGAGGGAAGAGGTTTTCACACCAATTTATATGCTGTT CGAGGCGTTTACAGTGGAGGAAAAGAAGGAAAAAGTAGAATTCAATGGCTTAGATCGATGGTTGGTAGTCCTGATTTGATTTCCATTCCAGGGGAGGTGG GAAGGATGTACGAAGCTAATGTGGATGATGTGGGGTACAGGTTGGTGGCAATTTATACTCCTGTGAGAGAAGATGGTGTTGAGGGGCAACCTGTGTCTGC CTCAACAGAGGCAACTGCAGTTGAGCCTGATGTTTTAAAAGAAGTTAAGCAGAAGCTTGAACTTGGATCTGTGAAATTTGAGGTATTATTTAACAAAGAC TGTTCTCCAAAAAAGATTCTAGGAGAGGGTAGTCTTGAGAGAAGAATACTAGAAGTTAATAGAAAACGAGTGAAAGTTGTGAAGCCAGGTTCTAAGACTT CATTTCCAACAACTGAAATTCGTGGAAGTTATGCTCCTCCCTTTCATGTGGATCTTTTCCGAAATGATCAACATCGGCTTAGGATTGTTGTGGATAGTGA GAATGAAGTAGACCTGATGGTCCCCTCCCGACATTTACGGGATGTCATCGTGCTTGTGATCCGAGGCTTTGCTCAACGATTCAATAGCACATCCCTCAAT TCTCTGCTCAAAATAGAGACATAA
AA sequence Show only first row Show all	>Potri.001G357700.3 pacid=42788644 polypeptide=Potri.001G357700.3.p locus=Potri.001G357700 ID=Potri.001G357700.3.v4.1 annot-version=v4.1 MEEPLGDEGARKAPTSERQKQQSSVSSVETSMKVSKTTKPTISATSNLSAPKRSKPKNTSDSISNVTTTTASSRKTSSVPVTRRNSTGGAPEKLSVSATK LQNTTTGSGGKTNAVSDPVKQSLPQLRRSSLPSAKPTIRTSSVSEARKSVPMDKSLRTSIGSGVRKPETVKKSSVKPALSVSSSSSSRRLTSSSLDSTGS SMSRKTISKLSSPSARSPSSSSGLRAGSLSISLDRSSNLSGRRRAGTPESRDSRFIILPQVEINKAGDDVRLDLRGHKVRSLNASGLNLTQNLEFVYLRD NLLHTLEGIEILKRVKVLDLSFNEFKGPEFEPLENCQALQQLYLAGNQITSLVSLPQLPNLEFLSVAQNKLRSLSMAGQPRLQVLAASKNKITTLKSFPH LPVLEHLRVEENPILKMPHLEAASILLVGPTLKKFNDRDLSREEVAIAKRYPACTALCIRYGWELCRPEKAADSTFCFLYEQWKEHFPPGYLLKDALVDQ PFEEDACHCHFVFVQDNNLSADPQLVLKYQWFVEERALSSFSAIPDATGEVYWPKHEDIGKFLKVECTPIMGEIKYPPVFAISSQVSPGNGIPKVVNLEV QGELVEGNVVKGYAEIAWCGGTPGKGVASWLRRRWNSSPTVIAGAEDEGYRLTLDDIDSSVVFMYTPVTEEGAKGEPHYKYTDFVKAAPPSVSNVRIIGD VVEGNIVKGVGNYFGGKEGPSKFEWLRENKNTGDFVSISTGTSEYALTNEDVGGRLAFVYSPINFEGQEGESVTILSLPVKRAPPKVKNVKIIGHLRENS KVTVTGTVTGGTESSSRVQWFKTSSSTLDGENSLDALSTAKIAKAFRIPLGAVGYYIVAKYTPMTPDGESGEPAYAISEKAVETLPPSLNFLSISGDYIE GGLLTASYGYVGGHEGKSEYNWYLHEFESDTGSLILEGSGVLQCRVTRDAIGKFISFQCVPVRDDGIVGEPRTCMGVERVRPGSPRLLSLQIVGTAIEGT MLTVDKKYWGGQEGNSVFRWFRTSSDGTQIEIRGATTASYVLLVDDISCFVSVSCEPVRSDWARGPIVLSEQMGPIIPGPPNCQSLEFLGSMLEGQRLSF VASYSGGERGNCFHEWFRVKSGDIKEKLSEDEFLDLTLKDVGKHIELVYTPIRKDGAKGSSQTILSNVIAPADPVGLELVIPSCYEDKEVTPQKTYFGGQ EGAGEYIWFRTRNKLNKSELLDIANAGDHVLICGKTLAYTPSIEDVGAYLALYWLPTRADGKCGKPLVSISNSPVNPALPVVSNVHVKKLPSGVYAGEGK YFGGHEGLSLFSWYRETNDGAIILIEGATYRTYEVTDSDYNCRLLFGYTPVRSDSVVGELKLSEPTGLVLPELPKVEMVSLTGKAIEGDVLTAVEVIPKS ETQQCVWSKYKKEVRYQWFCSSVSGDSNSFEHLPAQRSCSYKLRLEDIGRCFKCECVVTDVFGRSSEPAYAEIGPVLPGIPRIAKLEIEGRGFHTNLYAV RGVYSGGKEGKSRIQWLRSMVGSPDLISIPGEVGRMYEANVDDVGYRLVAIYTPVREDGVEGQPVSASTEATAVEPDVLKEVKQKLELGSVKFEVLFNKD CSPKKILGEGSLERRILEVNRKRVKVVKPGSKTSFPTTEIRGSYAPPFHVDLFRNDQHRLRIVVDSENEVDLMVPSRHLRDVIVLVIRGFAQRFNSTSLN SLLKIET

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G34680		AIR9	AUXIN-INDUCED IN ROOT CULTURES...		Potri.001G357700 [exp]	0	1
AT3G09070			Protein of unknown function (D...		Potri.016G111400 [exp]	2.00	0.8147
AT5G17410			Spc97 / Spc98 family of spindl...		Potri.010G180700 [exp]	2.00	0.7749
AT5G38880			unknown protein		Potri.004G114600 [exp]	2.00	0.8026
AT5G13300		AGD3, VAN3, SFC	ASCULAR NETWORK DEFECTIVE 3, S...		Potri.003G163200 [exp]	2.23	0.7637
AT5G50150			Protein of Unknown Function (D...		Potri.012G088300 [exp]	3.00	0.7923
AT5G41620			unknown protein		Potri.003G135000 [exp]	3.74	0.7599
AT4G39350		ATH-A, CESA2, A...	cellulose synthase A2 (.1)		Potri.002G066600 [exp]	4.69	0.7341
AT1G80490		TPR1	TOPLESS-related 1 (.1.2)		Potri.003G030000 [exp]	7.34	0.7622
AT1G78700	BZR	BEH4	BES1/BZR1 homolog 4 (.1)		Potri.011G071800 [exp]	7.48	0.7563
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Potri.011G045600 [exp]	8.83	0.7438

Compare expression of checked genes

Potri.001G357700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.