Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-DDB1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05420 1996 / 0 DDB1A damaged DNA binding protein 1A (.1.2) AT4G21100 1924 / 0 DDB1B damaged DNA binding protein 1B (.1) AT3G55200 219 / 3e-58 AtSAP130a Arabidopsis thaliana spliceosome-associated protein 130 a, Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1) AT3G55220 219 / 3e-58 AtSAP130b, SAP130b, AtSAP130ab Arabidopsis thaliana spliceosome-associated protein 130 b, Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1) AT3G11960 76 / 1e-13 Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1), Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.2) AT5G51660 76 / 2e-13 CPSF160, ATCPSF160 cleavage and polyadenylation specificity factor 160 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G048900 [exp] 224 / 9e-60 AT3G55200 2254 / 0.0 Arabidopsis thaliana spliceosome-associated protein 130 a, Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1) Potri.010G212100 [exp] 219 / 2e-58 AT3G55200 2243 / 0.0 Arabidopsis thaliana spliceosome-associated protein 130 a, Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1) Potri.012G022700 [exp] 92 / 1e-18 AT5G51660 2117 / 0.0 cleavage and polyadenylation specificity factor 160 (.1) Potri.006G197200 [exp] 71 / 4e-12 AT3G11960 1679 / 0.0 Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1), Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033455 [exp] 1494 / 0 AT4G05420 1519 / 0.0 damaged DNA binding protein 1A (.1.2) Lus10020922 [exp] 1358 / 0 AT4G21100 1606 / 0.0 damaged DNA binding protein 1B (.1) Lus10023443 [exp] 213 / 5e-56 AT3G55220 2237 / 0.0 Arabidopsis thaliana spliceosome-associated protein 130 b, Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1) Lus10040321 [exp] 199 / 1e-51 AT3G55220 2125 / 0.0 Arabidopsis thaliana spliceosome-associated protein 130 b, Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1) Lus10031111 [exp] 92 / 2e-18 AT5G51660 2134 / 0.0 cleavage and polyadenylation specificity factor 160 (.1) Lus10031692 [exp] 89 / 2e-17 AT5G51660 2142 / 0.0 cleavage and polyadenylation specificity factor 160 (.1) Lus10013542 [exp] 80 / 1e-14 AT3G11960 1640 / 0.0 Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1), Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.2) Lus10017295 [exp] 79 / 1e-14 AT3G11960 1633 / 0.0 Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1), Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF03178 [poplar] [flax] CPSF_A CPSF A subunit region CL0186 [poplar] [flax] PF10433 [poplar] [flax] MMS1_N Mono-functional DNA-alkylating methyl methanesulfonate N-term
Representative CDS sequence Show only first row Show all	>Potri.001G357900.1 pacid=42792831 polypeptide=Potri.001G357900.1.p locus=Potri.001G357900 ID=Potri.001G357900.1.v4.1 annot-version=v4.1 ATGAGTGTATGGAACTATGTGGTGACTGCTCACAAGCCCACCAATGTGACGCACTCTTGTGTCGGCAATTTCACCAGTTCTCAAGAGCTCAATCTCATCA TTGCGAAATGTACCCGTATCGAAATCAATCTGCTTACTCCTCAGGGATTACAGCCTATGTTAGATGTTCCAATATATGGACGAATTGCAACTCTCGAACT TTTCCGGCCTCATGGTGAAGCTCAGGACTTTTTATTTATTGCAACAGAAAGATACAAATTCTGTGTACTTCAGTGGGACGCAGAGACGTCTGAGCTAATT ACCAGAGCAATGGGGGATGTATCAGACCGTATAGGTCGCCCAACAGACAATGGTCAGATTGGCATAATTGATCCTGATTGTAGATTAATTGGACTCCATT TGTATGATGGGTTGTTTAAGGTCATTCCTTTTGATAATAAAGGACAGCTCAAAGAGGCTTTTAACATAAGGCTTGAGGAACTTCAAGTTTTGGATATCAA ATTTCTTCATGGTTGTTCAAAACCAACGATTGTTGTTCTTTACCAGGATAACAAGGATGCCCGTCATGTTAAAACATATGAGGTTGCTTTGAAAGATAAA GACTTTATTGAGGGTCCTTGGTCGCAGAACAATCTTGACAATGGTGCTGATTTGCTAATACCAGTTCCCCCACCTTTCTGTGGTGTTCTTATTATTGGAG AAGAAACAATTGTATATTGCAGCGCCAATGTTTTTAGAGCGATCCCAATCAGACCTTCTATCACGAAAGCATATGGAAGAGTTGATGCTGATGGTTCTAG GTATTTACTTGGCGATCATGCTGGGCTTCTTCACCTTCTAGTCATAACCCATGAGAAAGAAAAGGTCACTGGCCTCAAAATTGAGCTATTGGGAGAAACT TCTATTGCATCTACCATATCATATCTCGACAATGCTTTTGTCTTTATTGGTTCAAGCTACGGAGATTCACAGCTTGTAAAGTTAAATCTGCATCCCGATG CAAAAGGTACATATGTAGAAGTTCTGGACAGGTATGTCAATTTGGGACCAATTGTTGACTTCTGTGTGGTGGACCTGGAGCGGCAAGGCCAAGGTCAGGT TGTCACTTGCTCTGGAGCCTATAAGGATGGTTCTCTTCGGATAGTTCGTAATGGAATAGGAATCAATGAACAGGCATCTGTAGAGCTTCAAGGCATCAAA GGAATGTGGTCATTAAGATCTTTGACTGATGATCCATTTGACACCTTTCTGGTTGTAAGTTTTATTAGCGAGACAAGAATTTTGGCAATGAACATTGAGG ATGAGTTGGAGGAAACTGAAATAGAGGGTTTCTGTTCACAAGTGCAGACATTGTTCTGCCATTGTGCTGTGTTCAACCAGCTTGTACAAGTTACATCAAG CTCTGTAAGACTGGTCAGTTCTACAACTAGAGAGCTCAGACAGGAATGGAATGCTCCATCAGGTTATTCAATAAATGTCGCCACTGCTAATGCCACCCAG GTTTTATTGGCAACTGGTGGTGGCCACCTCGTCTATCTGGAAATCGGTGATGGGACACTGACACAGGCAAAACATGCACAGTTAGAGTGTGAGATATCAT GCCTGGACATCAACCCCATTGGAGAGAATCCCAACTATAGTCAACTAGCTGCGGTTGGAATGTGGACAGACATAAGTGTCAGGATATTTTCATTGCCTGA TCTAAATCTCATAACAAAGGAGCCATTGGGAGGAGAGATAATACCCCGTTCTGTTCTTCTATGTTCCTTTGAAGGGATAGCGTATTTATTATGTGCCCTT GGAGACGGACACCTCTTGAACTTCCTATTGAACTTGAGTACTGGCGGGTTGAAAGATAGGAAAAAGGTGTCTTTGGGGACCCAACCTATAACACTCCGTA CTTTCTCATCGAAGAATACCACACATGTATTTGCTGCGTCAGATAGGCCAACTGTCATTTACAGCAGCAATAAGAAACTACTTTACAGCAATGTAAACTT GAAAGAAGTCAGTCATATGTGTCCTTTTAACTCTGCTGCATTTCCAGACAGCCTTGCTATTGCAAAAGAAGGGGAACTTAGCATTGGCACCATCGATGAT ATCCAAAAGCTTCACATCCGCTCTATTCCATTGGGTGAACATGCACGGCGTATATGTCACCAGGAGCAGTCTCGGACTTTCTCCATTTGTAGTATGAAAA ACCAATCCAATGCAGAAGAATCTGAAATGCATTTTATTCGATTGTTAGATGATCAAACCTTTGAGTTCATATCAACATACCCACTTGACACATTTGAGTA TGGCTGCTCCATACTTAGCTGCTCCTTTTCTGATGATAGCAACGTGTACTATTGTGTTGGAACTGCATATGTTTTGCCAGAAGAAAACGAGCCAACCAAG GGCCGAATACTGGTTTTCATAGTGGAAGATGGGAAGTTGCAGCTTATTGCTGAGAAGGAAACAAAGGGGGCAGTATACTCTTTGAATGCTTTCAATGGCA AACTGCTGGCTGCTATTAATCAAAAGATCCAGTTATACAAGTGGATGCTCCGAGATGATGGAACACGTGAGCTGCAGTCTGAGTGTGGGCATCATGGGCA CATACTTGCCCTCTATGTACAAACTCGTGGAGATTTCATTGTTGTTGGTGATCTGATGAAGTCAATCTCCTTGCTAATCTATAAGCATGAGGAAGGTGCT ATTGAGGAGCGAGCCCGTGATTATAATGCAAATTGGATGTCGGCAGTTGAGATTCTTGATGATGACATTTACCTTGGTGCTGAAAATAACTTTAACCTAT TCACGGTTCGGAAAAATAGTGAAGGTGCCACTGATGAGGAACGAGGCCGTCTTGAGGTGGTCGGTGAGTATCACCTTGGAGAATTTGTAAATCGATTCCG ACATGGTTCCCTTGTCATGCGCTTGCCAGATTCCGATGTTGGCCAGATCCCAACTGTCATTTTTGGGACTGTTAATGGTGTAATCGGGGTCATTGCTTCA CTTCCTCACGAGCAATACCTCTTTTTGGAGAAGCTGCAGTCAAACTTAAGAAAGGTGATAAAGGGTGTTGGAGGATTGAGCCATGAGCAATGGAGATCAT TCAACAATGAGAAGAAAACTGTAGATGCCAAGAATTTCTTGGATGGAGATCTTATTGAGTCATTCCTTGATCTCAGCCGTAGTCGGATGGATGAGATATC CAAGGCAATGGAGATCTCCGTGGAGGAGCTTTGCAAGAGAGTGGAAGAGCTGACAAGGCTGCATTGA
AA sequence Show only first row Show all	>Potri.001G357900.1 pacid=42792831 polypeptide=Potri.001G357900.1.p locus=Potri.001G357900 ID=Potri.001G357900.1.v4.1 annot-version=v4.1 MSVWNYVVTAHKPTNVTHSCVGNFTSSQELNLIIAKCTRIEINLLTPQGLQPMLDVPIYGRIATLELFRPHGEAQDFLFIATERYKFCVLQWDAETSELI TRAMGDVSDRIGRPTDNGQIGIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLHGCSKPTIVVLYQDNKDARHVKTYEVALKDK DFIEGPWSQNNLDNGADLLIPVPPPFCGVLIIGEETIVYCSANVFRAIPIRPSITKAYGRVDADGSRYLLGDHAGLLHLLVITHEKEKVTGLKIELLGET SIASTISYLDNAFVFIGSSYGDSQLVKLNLHPDAKGTYVEVLDRYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIK GMWSLRSLTDDPFDTFLVVSFISETRILAMNIEDELEETEIEGFCSQVQTLFCHCAVFNQLVQVTSSSVRLVSSTTRELRQEWNAPSGYSINVATANATQ VLLATGGGHLVYLEIGDGTLTQAKHAQLECEISCLDINPIGENPNYSQLAAVGMWTDISVRIFSLPDLNLITKEPLGGEIIPRSVLLCSFEGIAYLLCAL GDGHLLNFLLNLSTGGLKDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELSIGTIDD IQKLHIRSIPLGEHARRICHQEQSRTFSICSMKNQSNAEESEMHFIRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTK GRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGA IEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIAS LPHEQYLFLEKLQSNLRKVIKGVGGLSHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRSRMDEISKAMEISVEELCKRVEELTRLH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G05420		DDB1A	damaged DNA binding protein 1A...		Potri.001G357900 [exp]	0	1	Pt-DDB1.1
AT3G02360			6-phosphogluconate dehydrogena...		Potri.008G113700 [exp]	4.12	0.6092	GND.1
AT5G57970			DNA glycosylase superfamily pr...		Potri.006G184700 [exp]	5.29	0.6273
AT5G15080			Protein kinase superfamily pro...		Potri.008G194700 [exp]	6.08	0.7298
AT5G14240			Thioredoxin superfamily protei...		Potri.017G066200 [exp]	7.48	0.7025
AT5G09250		KIWI	ssDNA-binding transcriptional ...		Potri.007G101100 [exp]	20.97	0.6294	KIWI.1
AT4G33410		ATSPPL1	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Potri.015G145600 [exp]	25.03	0.5755
AT5G23880		ATCPSF100, EMB1...	ENHANCED SILENCING PHENOTYPE 5...		Potri.001G231800 [exp]	28.58	0.5717	Pt-CPSF100.2
AT3G12010			unknown protein		Potri.006G195000 [exp]	29.51	0.5560
AT5G06770	C3HZnF		KH domain-containing protein /...		Potri.001G013200 [exp]	30.51	0.6045
AT3G55960			Haloacid dehalogenase-like hyd...		Potri.006G100800 [exp]	32.00	0.5781

Compare expression of checked genes

Potri.001G357900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.