Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ATBRCA1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21070 649 / 0 ATBRCA1 ARABIDOPSIS THALIANA BREAST CANCER SUSCEPTIBILITY1, breast cancer susceptibility1 (.1) AT1G04020 332 / 2e-100 ROW1, ATBARD1, BARD1 breast cancer associated RING 1 (.1.2) AT5G44280 53 / 8e-07 ATRING1A ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2) AT1G03770 52 / 2e-06 ATRING1B ARABIDOPSIS THALIANA RING 1B, RING 1B (.1.2.3) AT2G32950 50 / 8e-06 FUS1, EMB168, DET340, ATCOP1, COP1 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) AT2G26350 49 / 2e-05 PEX10, ATPEX10 peroxin 10 (.1) AT1G18660 49 / 2e-05 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) AT5G22750 47 / 6e-05 RAD5A, RAD5 DNA/RNA helicase protein (.1) AT3G07200 44 / 0.0001 RING/U-box superfamily protein (.1.2) AT5G05130 45 / 0.0003 DNA/RNA helicase protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G259000 [exp] 313 / 1e-92 AT1G04020 472 / 3e-156 breast cancer associated RING 1 (.1.2) Potri.004G047000 [exp] 57 / 4e-08 AT5G44280 328 / 3e-107 ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2) Potri.011G056300 [exp] 56 / 8e-08 AT5G44280 324 / 7e-106 ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2) Potri.011G141400 [exp] 55 / 4e-07 AT3G15120 1478 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G197400 [exp] 53 / 1e-06 AT4G02110 374 / 6e-110 transcription coactivators (.1) Potri.017G013000 [exp] 53 / 1e-06 AT5G44280 355 / 3e-117 ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2) Potri.007G138700 [exp] 52 / 2e-06 AT5G44280 312 / 3e-100 ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2) Potri.004G002700 [exp] 51 / 4e-06 AT2G32950 832 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G068100 [exp] 51 / 4e-06 AT1G18660 679 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036151 [exp] 451 / 5e-143 AT4G21070 381 / 6e-118 ARABIDOPSIS THALIANA BREAST CANCER SUSCEPTIBILITY1, breast cancer susceptibility1 (.1) Lus10022895 [exp] 307 / 2e-91 AT1G04020 421 / 2e-137 breast cancer associated RING 1 (.1.2) Lus10024930 [exp] 122 / 2e-28 AT1G04020 201 / 3e-56 breast cancer associated RING 1 (.1.2) Lus10039845 [exp] 53 / 1e-06 AT5G44280 370 / 2e-122 ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2) Lus10001455 [exp] 53 / 1e-06 AT4G02110 372 / 1e-108 transcription coactivators (.1) Lus10018609 [exp] 53 / 1e-06 AT5G44280 375 / 3e-124 ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2) Lus10029990 [exp] 52 / 2e-06 AT2G32950 1088 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10017935 [exp] 52 / 4e-06 AT3G15120 1385 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10035332 [exp] 50 / 7e-06 AT2G32950 1088 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10013677 [exp] 50 / 1e-05 AT3G15120 1474 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF00097 [poplar] [flax] zf-C3HC4 Zinc finger, C3HC4 type (RING finger) CL0459 [poplar] [flax] BRCT-like PF00533 [poplar] [flax] BRCT BRCA1 C Terminus (BRCT) domain CL0390 [poplar] [flax] zf-FYVE-PHD PF13771 [poplar] [flax] zf-HC5HC2H PHD-like zinc-binding domain
Representative CDS sequence Show only first row Show all	>Potri.001G358100.1 pacid=42792260 polypeptide=Potri.001G358100.1.p locus=Potri.001G358100 ID=Potri.001G358100.1.v4.1 annot-version=v4.1 ATGATAAGGAGCGCCGTCAGTGAGTCTTCTTCTCATTATCAAATTTCAATCCAGAGAGAAAGGCGAGCGAGTTGCAAAATGGGAGATCCAACTCACCTCG AGAAAATGGGCAGAGAGCTCAAGTGCCCCATCTGCTTAAGTCTTCTTGACACTGCAGTCTCGCTTACATGCAATCATGTTTTCTGCAATTCATGTATTGT GAAATCGATGAAATCAGGTTCCGATTGTCCAGTCTGTAAAGTGCCATACCGGCGTAGAGAGGTTCGCGCTGCTCCTCATATGGATAACTTGGTCAGCATT TACAAAAGCATGGAAATTGCTTCAGGATTCAATATATTCGTCACTCAGAATCCACCACCATCAACTAAATTATCAGATGTACAAAAGCAAGTAGGAGACG ATACGGACTGTGGCAGAGAAGATATTGGTTGGATTTGTCAGGATATGTTAGATGAGCAACTTAAAATATCCAGACAAAAAGATTCAAGGAAACTTGATGA ATCCAACATGGAATTATGTGGTCCCATTACTTCAAAACCTTCGTTTCCAACCAAGAAAAGAGTTCAGGTGCCACAATGCTCTCTTTCAGGCACATCGGCA CAACCTGAGAAGCTACAAACTGGATCAAGAGAAATAAAAAAAGATGACTTTAAAAATGATTCATCAGTCTCAAGGAAGAACCCTGTTGTCGATGAAAAGG GAGAACGCATGCTATCGCCTTTCTTTTGGTTGAGAGATGAAGATGGAGAGAAGTCAAGTCAGCACACTGATATGGATCAGCTTCTGGATATCACACCACC AAATGTTCCTACTTTCAGTGATATCAAAGACTCAGATGACGAAAACCCCCCTGAATCATCCTCGAAAGGGGCAGTGTGTGGCAACGAATCACATGTTGCA GATTTTTTTGACAGTGAGATGTTTGAATGGACGCAACGAGCTTGCTCTCCTGATATTTTTTCAAGCCCAGCAAAGATGCAGGCTGAAAAAACAACGGAAA TGGATGGAATTCGAGAAAGTAAGTCAGAAACACCCCCACTGGATGCAAATACAAATGAAGAACGTAGTGATGAAAGCAAAAACTGTACTGATACCAAACC GCGAATGGGTATTTCTGAAGACATACTGGCCAGTCTATCCTCTCCAATAGTTAAAAGTGCAAATTACCAAATCGGGCGTAATACTTCCAATAAGAGAGGC AGGAATGCTAAGGACACAACATTAAGGAATTGTGCTCGGAAGAATGCAGATAAGGGTGGTAGGTTGAAAGGAGAGAATGTTTCTTCTGTTTCAGTTAGAG AAAATTTGGACCAGGCTGATGAAAACACGGTTACTGATCAGCTGCCTATTTCATTTGATAAGAAACAAGGTCGCAGTAATCTTAAAAGGAAGAAGAATGG AAAAGTGAGTAGAAAGATCAATCTCCGGTGCAAGGAACGAAAGCTGGATTCTGTTGAGATAAACATGATTAAAGAAGTCCATTCAATACACAACCAAATG GACAAAGATGAACACGCCCATGATTACTTTTTACCTGCCCCTCTGGTTGAAGATAAAAAACCCTCAGAAATCAAGGGGAAACGTGGCAAACAAGGTGAAG AAGTCAAGTCTGCATTGTGTCCAGAACATAATCAAGACTTAAAATGTAAGAAAAACATGGAAGTTTCATTAGATGGTATCATAGAAGATGGATTAGTCAG TGACCATCAAGAAGGTGCTGACAATGTCTTTGCAGAGGAAGCTCAGTCCACTGAAAATATTACTGGCAACTCTGCAAGGGCAACTGAATCTGCTGAGAAG GTTCAAGCCAGTCTTAATACTCGAATTCTTGATGATTTGGCAACATTAAGGGATCATTGCCAAGAAAATGGAGCGGCCATACTTAACTGCAAGCTTAATT ATAATATTCAATGTGCTTTCTGTCTTTCTTCAGAAGTCTCAGAGGCTTCAGGAGAGATGATCCACTACAACAATGGCATACCTGTGGCGGCAGATTATAA TGGTGGATCCAGGGTCATACACTCTCATAAAAACTGTGCTGAGTGGGCACCTAATGTCTACTTCGAGGGTGATAATGCAATTAACCTTGAAGCTGAATTA GCTAGAAGTCGGAGAATTAAGTGTTGCTGCTGTGGACTCAAAGGTGCTGCTCTTGGATGTTACGAGAAGAGTTGTCGCAAGAGTTTCCATGTTCCTTGTG CGAAGTTGACCCACCAATGTCGATGGGATACTGAAAACTTTGTCATCTTATGCCCTCTTCATGCTTCTTGTAAGTTGCCGAATGAAAGCAAACAATCTCA AGAGAGGAGAAAAAACTGCATTTCAAAAGGACAAACACCAAGGCAATACAATCAAGTTACTTTCAAACATGACATCAATATGCATAAAAGTCGGAAATCA TGTTTAACACATGACAAGTTGGTTCTTTGCTGTTCGGCTCTCACAGTTGGAGAAAAGGAAATTGTTTCTGAGTTTGAGAGTTTATCTGGAGTTACAGTCT TGAAGAATTGGGATTCAAGTGTCACTCATGTCATTGCATCAACAGATGAAAATGGAACATGCAGAAGAACCCTTAAAGTTTTGATGGGTATCTTGAAGGG GAAGTGGATAGTGAACATTGAATGGGTCAAGGCTTGTATCAAAGCCATGAAACTTGTTGAAGAGATGCGATATGAAATTACTGCTGATGTTCACGGAATC AGGGATGGTCCACGAAATGGAAGACTAAGAGTCCTGAACAAGCAACCAAACATTTTTGAGGGATTTAAGTTCTATTTCATGGGAGATTTTATCCCTTCTT ACAAGGGATATATACAAGATCTTTTAGTTGCTGGTGGAGGAACAATTCTGCACAGAAAACCCATTTCGGGAGCCCAGGGAACCTTGTTACTGGACTCTAA ACCTCCAACTTTCATAATGTACAGCCTCGAAATGCCTGATAAATGTGATCCTAGCAAGAAGAATATGATATTAAACCGAAGGCAGTCTGATGCAGAAGCT CTAGCTAGTTCAACCGGAGCGAAGGCGGTAAGCAATAAATGGGTTTTAAACTCTATTGCAGCCTGCAAATTACAAAGTTTGGCTCAATAA
AA sequence Show only first row Show all	>Potri.001G358100.1 pacid=42792260 polypeptide=Potri.001G358100.1.p locus=Potri.001G358100 ID=Potri.001G358100.1.v4.1 annot-version=v4.1 MIRSAVSESSSHYQISIQRERRASCKMGDPTHLEKMGRELKCPICLSLLDTAVSLTCNHVFCNSCIVKSMKSGSDCPVCKVPYRRREVRAAPHMDNLVSI YKSMEIASGFNIFVTQNPPPSTKLSDVQKQVGDDTDCGREDIGWICQDMLDEQLKISRQKDSRKLDESNMELCGPITSKPSFPTKKRVQVPQCSLSGTSA QPEKLQTGSREIKKDDFKNDSSVSRKNPVVDEKGERMLSPFFWLRDEDGEKSSQHTDMDQLLDITPPNVPTFSDIKDSDDENPPESSSKGAVCGNESHVA DFFDSEMFEWTQRACSPDIFSSPAKMQAEKTTEMDGIRESKSETPPLDANTNEERSDESKNCTDTKPRMGISEDILASLSSPIVKSANYQIGRNTSNKRG RNAKDTTLRNCARKNADKGGRLKGENVSSVSVRENLDQADENTVTDQLPISFDKKQGRSNLKRKKNGKVSRKINLRCKERKLDSVEINMIKEVHSIHNQM DKDEHAHDYFLPAPLVEDKKPSEIKGKRGKQGEEVKSALCPEHNQDLKCKKNMEVSLDGIIEDGLVSDHQEGADNVFAEEAQSTENITGNSARATESAEK VQASLNTRILDDLATLRDHCQENGAAILNCKLNYNIQCAFCLSSEVSEASGEMIHYNNGIPVAADYNGGSRVIHSHKNCAEWAPNVYFEGDNAINLEAEL ARSRRIKCCCCGLKGAALGCYEKSCRKSFHVPCAKLTHQCRWDTENFVILCPLHASCKLPNESKQSQERRKNCISKGQTPRQYNQVTFKHDINMHKSRKS CLTHDKLVLCCSALTVGEKEIVSEFESLSGVTVLKNWDSSVTHVIASTDENGTCRRTLKVLMGILKGKWIVNIEWVKACIKAMKLVEEMRYEITADVHGI RDGPRNGRLRVLNKQPNIFEGFKFYFMGDFIPSYKGYIQDLLVAGGGTILHRKPISGAQGTLLLDSKPPTFIMYSLEMPDKCDPSKKNMILNRRQSDAEA LASSTGAKAVSNKWVLNSIAACKLQSLAQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21070		ATBRCA1	ARABIDOPSIS THALIANA BREAST CA...		Potri.001G358100 [exp]	0	1	Pt-ATBRCA1.1
AT1G47230		CYCA3;4	CYCLIN A3;4 (.1.2)		Potri.002G121500 [exp]	1.00	0.9540	CYCA3.1
AT3G56870			unknown protein		Potri.014G181200 [exp]	1.41	0.9350
AT3G18524		ATMSH2, MSH2	MUTS homolog 2 (.1)		Potri.012G060000 [exp]	3.00	0.9120	Pt-MSH2.1
AT1G67320		EMB2813	EMBRYO DEFECTIVE 2813, DNA pri...		Potri.003G169300 [exp]	4.24	0.8687
AT5G13960		SDG33, KYP, SUV...	SET DOMAIN PROTEIN 33, KRYPTON...		Potri.014G143900 [exp]	4.47	0.8659
AT4G30860		SDG4, ASHR3	ASH1-related 3, SET domain gro...		Potri.018G102100 [exp]	5.00	0.8888
AT3G14740			RING/FYVE/PHD zinc finger supe...		Potri.011G103100 [exp]	5.65	0.9003
AT4G29910		EMB2798, ORC5, ...	EMBRYO DEFECTIVE 2798, origin ...		Potri.014G085900 [exp]	5.91	0.8813
AT2G36200			P-loop containing nucleoside t...		Potri.006G210700 [exp]	7.34	0.8882
AT4G15790			unknown protein		Potri.010G024600 [exp]	7.48	0.8756

Compare expression of checked genes

Potri.001G358100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.