Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07220 207 / 5e-66 ATBAG3 BCL-2-associated athanogene 3 (.1) AT5G62100 204 / 5e-65 ATBAG2 BCL-2-associated athanogene 2 (.1.2.3) AT5G52060 192 / 1e-59 ATBAG1 BCL-2-associated athanogene 1 (.1) AT3G51780 146 / 1e-42 ATBAG4 BCL-2-associated athanogene 4 (.1) AT5G40630 87 / 9e-21 Ubiquitin-like superfamily protein (.1) AT5G14360 82 / 4e-19 Ubiquitin-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G135500 [exp] 213 / 1e-67 AT5G52060 303 / 2e-101 BCL-2-associated athanogene 1 (.1) Potri.012G133400 [exp] 205 / 2e-64 AT5G52060 305 / 2e-102 BCL-2-associated athanogene 1 (.1) Potri.001G279500 [exp] 192 / 2e-60 AT3G51780 210 / 2e-67 BCL-2-associated athanogene 4 (.1) Potri.003G121500 [exp] 181 / 1e-55 AT5G52060 243 / 1e-78 BCL-2-associated athanogene 1 (.1) Potri.009G074300 [exp] 179 / 2e-55 AT3G51780 196 / 4e-62 BCL-2-associated athanogene 4 (.1) Potri.001G110300 [exp] 174 / 3e-52 AT5G52060 239 / 2e-76 BCL-2-associated athanogene 1 (.1) Potri.016G121200 [exp] 132 / 2e-37 AT3G51780 218 / 1e-70 BCL-2-associated athanogene 4 (.1) Potri.001G339100 [exp] 89 / 6e-22 AT5G14360 166 / 6e-53 Ubiquitin-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023279 [exp] 296 / 5e-102 AT5G07220 196 / 4e-62 BCL-2-associated athanogene 3 (.1) Lus10027420 [exp] 214 / 2e-68 AT5G52060 349 / 6e-120 BCL-2-associated athanogene 1 (.1) Lus10038882 [exp] 209 / 2e-66 AT5G52060 327 / 1e-111 BCL-2-associated athanogene 1 (.1) Lus10015004 [exp] 205 / 6e-65 AT5G52060 333 / 4e-114 BCL-2-associated athanogene 1 (.1) Lus10005772 [exp] 183 / 3e-56 AT5G52060 304 / 2e-102 BCL-2-associated athanogene 1 (.1) Lus10027822 [exp] 151 / 4e-44 AT3G51780 221 / 4e-71 BCL-2-associated athanogene 4 (.1) Lus10005051 [exp] 151 / 3e-43 AT3G51780 221 / 1e-69 BCL-2-associated athanogene 4 (.1) Lus10006328 [exp] 143 / 2e-41 AT5G52060 194 / 2e-60 BCL-2-associated athanogene 1 (.1) Lus10029598 [exp] 142 / 2e-41 AT5G52060 195 / 8e-61 BCL-2-associated athanogene 1 (.1) Lus10003393 [exp] 105 / 5e-27 AT3G51780 180 / 5e-56 BCL-2-associated athanogene 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF00240 [poplar] [flax] ubiquitin Ubiquitin family CL0072 [poplar] [flax] PF02179 [poplar] [flax] BAG BAG domain
Representative CDS sequence Show only first row Show all	>Potri.001G358200.1 pacid=42790061 polypeptide=Potri.001G358200.1.p locus=Potri.001G358200 ID=Potri.001G358200.1.v4.1 annot-version=v4.1 ATGGTGAAGGCAAGATCGCATCTGTGTGCTAAAATGAGCTCGAGCTCGACGACGACTGCAATGTCAACGTCGTGTAGAGATCATGAGGATGAGATTGAGT GGGAGATGAGACCAGGAGGCATGCTGGTGCAGAAAAGAAATGACAAGGATGATGGTGTTCCTCCTCTTTTAAATGTTCGCCTTCGAATTCTACATGGTGT TCTTCGGTACGAGATCTCCGTCAACTCTCAGGCGACGTTCGGAGAGGTAAAGAAGGTTCTGATGGGTAAGACAGGGTTACAAATAGGTGATCAGAAGATA ATTTACAAAGAAAAAGAGAGGCTAAATGGCGAGTACTTAGATAGATGTGGTGTCAAAAATCGATCAAAACTCATATTGATGGAGGATCCATCAAGTATTG AGAGAAGATACATTGAGATGTGTAAAAATGCTCGTATCCAAACTGCATATCGGGCCATTTCTGACGTGTCTATGGAGGTTGATAAACTTACAGAGCAGGT TTCTGCGATTGAAAAATCTATATTAAATGGAGTTAAGGTACCAGAAATTCAAATCACGACATTAATTGAGATGCTAATGAGACAAGCGATTAAGCTTGAT AACATTTCTGCAGAAGGAGATGTTTATGCTCAAAAACATTTACAGGGTAAGAGGGTGCAGCGGTGTGTTGAAACACTAGATGTGCTGAAGATATCAAATC CACTGATAAAACCTGTTGTTGTCGCAGCCAAATGGGAGACATTTGATCCTCCTCCCACCACGTCCCGATGGGAATTTTTTAATTGA
AA sequence Show only first row Show all	>Potri.001G358200.1 pacid=42790061 polypeptide=Potri.001G358200.1.p locus=Potri.001G358200 ID=Potri.001G358200.1.v4.1 annot-version=v4.1 MVKARSHLCAKMSSSSTTTAMSTSCRDHEDEIEWEMRPGGMLVQKRNDKDDGVPPLLNVRLRILHGVLRYEISVNSQATFGEVKKVLMGKTGLQIGDQKI IYKEKERLNGEYLDRCGVKNRSKLILMEDPSSIERRYIEMCKNARIQTAYRAISDVSMEVDKLTEQVSAIEKSILNGVKVPEIQITTLIEMLMRQAIKLD NISAEGDVYAQKHLQGKRVQRCVETLDVLKISNPLIKPVVVAAKWETFDPPPTTSRWEFFN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G07220		ATBAG3	BCL-2-associated athanogene 3 ...		Potri.001G358200 [exp]	0	1
AT4G01850		AtSAM2, SAM-2, ...	S-adenosylmethionine synthetas...		Potri.002G189200 [exp]	3.00	0.9082
AT2G37040		PAL1, ATPAL1	PHE ammonia lyase 1 (.1)		Potri.008G038200 [exp]	8.12	0.8428	Pt-PAL.2,PAL2
AT1G10460		GLP7	germin-like protein 7 (.1)		Potri.010G038200 [exp]	8.36	0.8374
AT5G23750			Remorin family protein (.1.2)		Potri.003G124400 [exp]	10.58	0.8384
AT4G17220		ATMAP70-5	microtubule-associated protein...		Potri.006G018000 [exp]	14.45	0.8344
AT4G00430		PIP1;4, TMP-C, ...	TRANSMEMBRANE PROTEIN C, PLASM...		Potri.016G113300 [exp]	15.65	0.7857
AT5G07250		ATRBL3	RHOMBOID-like protein 3 (.1.2)		Potri.015G142000 [exp]	16.49	0.8602
AT1G58120			unknown protein		Potri.007G113200 [exp]	18.97	0.7274
AT3G21530			DNAse I-like superfamily prote...		Potri.008G198100 [exp]	19.18	0.8242
AT4G17220		ATMAP70-5	microtubule-associated protein...		Potri.016G006900 [exp]	20.19	0.8161

Compare expression of checked genes

Potri.001G358200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.