Plant FIBer expression Database

Potri.001G358300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G30360 893 / 0 ERD4 early-responsive to dehydration 4, Early-responsive to dehydration stress protein (ERD4) (.1)
AT4G02900 332 / 8e-103 ERD (early-responsive to dehydration stress) family protein (.1)
AT3G21620 309 / 4e-94 ERD (early-responsive to dehydration stress) family protein (.1)
AT1G32090 305 / 2e-92 early-responsive to dehydration stress protein (ERD4) (.1)
AT4G04340 300 / 1e-90 ERD (early-responsive to dehydration stress) family protein (.1), ERD (early-responsive to dehydration stress) family protein (.2), ERD (early-responsive to dehydration stress) family protein (.3)
AT4G15430 297 / 8e-90 ERD (early-responsive to dehydration stress) family protein (.1), ERD (early-responsive to dehydration stress) family protein (.2)
AT1G11960 296 / 2e-89 ERD (early-responsive to dehydration stress) family protein (.1)
AT4G22120 287 / 8e-86 ERD (early-responsive to dehydration stress) family protein
AT1G62320 272 / 3e-80 ERD (early-responsive to dehydration stress) family protein (.1)
AT1G69450 229 / 4e-65 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G006100
[exp]
324 / 8e-100 AT4G22120 1113 / 0.0 ERD (early-responsive to dehydration stress) family protein
Potri.014G156100
[exp]
305 / 9e-93 AT3G21620 1104 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1)
Potri.011G009900
[exp]
305 / 2e-92 AT4G22120 1142 / 0.0 ERD (early-responsive to dehydration stress) family protein
Potri.002G226800
[exp]
304 / 2e-92 AT3G21620 1105 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1)
Potri.001G133800
[exp]
301 / 1e-90 AT1G32090 1061 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1)
Potri.003G099800
[exp]
300 / 1e-90 AT1G32090 1094 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1)
Potri.004G006000
[exp]
279 / 7e-83 AT4G22120 1139 / 0.0 ERD (early-responsive to dehydration stress) family protein
Potri.004G005900
[exp]
275 / 2e-81 AT4G22120 1151 / 0.0 ERD (early-responsive to dehydration stress) family protein
Potri.004G115800
[exp]
252 / 2e-73 AT3G01100 866 / 0.0 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022924
[exp]
924 / 0 AT1G30360 1003 / 0.0 early-responsive to dehydration 4, Early-responsive to dehydration stress protein (ERD4) (.1)
Lus10024894
[exp]
872 / 0 AT1G30360 948 / 0.0 early-responsive to dehydration 4, Early-responsive to dehydration stress protein (ERD4) (.1)
Lus10030024
[exp]
324 / 1e-99 AT3G21620 1147 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1)
Lus10035300
[exp]
322 / 6e-99 AT3G21620 1146 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1)
Lus10002133
[exp]
314 / 2e-95 AT1G32090 1136 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1)
Lus10020032
[exp]
307 / 3e-93 AT4G22120 1186 / 0.0 ERD (early-responsive to dehydration stress) family protein
Lus10015551
[exp]
306 / 1e-92 AT4G22120 1183 / 0.0 ERD (early-responsive to dehydration stress) family protein
Lus10028000
[exp]
298 / 5e-90 AT4G02900 1116 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1)
Lus10000660
[exp]
295 / 6e-89 AT4G02900 1113 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1)
Lus10002996
[exp]
287 / 9e-86 AT4G22120 1087 / 0.0 ERD (early-responsive to dehydration stress) family protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0416 Anoctamin-like PF02714 RSN1_7TM Calcium-dependent channel, 7TM region, putative phosphate
CL0416 PF13967 RSN1_TM Late exocytosis, associated with Golgi transport
CL0221 RRM PF14703 PHM7_cyt Cytosolic domain of 10TM putative phosphate transporter
Representative CDS sequence
>Potri.001G358300.1 pacid=42788852 polypeptide=Potri.001G358300.1.p locus=Potri.001G358300 ID=Potri.001G358300.1.v4.1 annot-version=v4.1
ATGGATTTCTCATCTTTCTTGACGTCTTTAGGGACGTCGTTTTTGATTTTCGTAGTGTTAATGCTTCTGTTTACATGGCTGTCGAGGAAGCCTGGAAACT
CCTTCGTGTATTACCCCAACCGGATCTTGAAAGGTCTGGAACCCTGGGATGGCGCGTCAAGATCCCGCAACCCGTTTGCTTGGATCCGGGAAGCCTTCTC
TTCCAGCGAGCAGGACGTTATAAACATGTCCGGTGTAGACACTGCTGTCTACTTTGTCTTCTTGAGCACTGCTCTGGCAATATTGGTTTTGTCTGGCCTT
GTTCTGCTGCCGGTACTTCTGCCTGTTGCTGCCACCGACGACAATGTGAAAACACAAAAAGATAAAGGCAATCAGAGTTTTAGTGACATTGACAAGTTAT
TAATGGGAAATGTTAAGGGGGGGAGTCCAAGGCTGTGGGCATTCTTGATTGCTACCTATTGGGTTTCTCTTGTTACCTATTTCTTGCTATGGAAGGCGTA
CGTGCATGTTTCTGGGCTGAGAGCAAATGCTCTAATGTCTCCTGAACTGACACCAGAGCAATTCGCTGTTCTTGTCAGAGACATACCTCCTGTCCCTGAG
GGCCGAACTAGAAAGGAACAGGTTGATTCATATTTTAAATCCATCTATCCTGAGACATTTTATAGATCAATGGTGGTGACAAACAACAAAGAGGTTAACA
AGATTTATATAGAGTTGGAAGGATACAAGAAGAAGCTTGCACATGCAGAAGCTGTATACGATGAATCCAAAAAAACAGGCAAACCAGAAGGATTGAGACC
AACCATCAGAACTGGCCCCCTTGGTATTGTTGGTAGAAAGGTAGATAGCATAGAGCACTACAATGAGAAGATTAAAGAGCTAATCCCAAAGTTGGAAGCT
GAACAGAAAGTCACTCTCCGGGAGAATCAACAAGCTTGTGCTTTTGCCTTCTTCACCAATAGGGTGACTGCAGCTTCTGCCGCCCAGAGTCTACATGCCC
AAATGGTTGACACCTGGACTGTCATGGAAGCCCCTGAACCACGTCAAATAATATGGTCTAATCTTAAAATTAAGTATTTTCAAAGGATAATCCGGCAGTA
TGTTGTTTGTTTTATTGTGGCTCTGACCATATTGTTTTATATGATACCAATCGGGCTCATTTCCGCATTAACAACCCTGGATAATCTGAAGAAAATTCTC
CCATTTTTAAAGCCAATTGTGAATATTGTCGCAGTTAAGACGGTGCTGGAAGCGTACCTTCCTCAGATTGCACTCATTGTGTTTTTGGCACTGTTGCCCA
AGTTACTTTTGGCTCTCTCCAAGGCTGAGGGAATTCCTTCAGTGGGCCATGCAGTAAGGGCCACTTCTGGAAAATATTTCTATTTTACCATACTGAACGT
TTTTATTGGAGTGACACTGGGTGGCACCTTATTCACCACGTTCAAGAGCATTGAGGAGAAACCAAACTCCATTGTTAGTTTGCTTGCGAGTAGCCTCCCG
GGGAATGCAACTTTCTTCCTGACTTTTGTGGCTCTGAAGTTTTTCGTTGGCTATGGACTCGAGCTGTCTCGTATAGTTCCTCTAATCATTTTTCATCTAA
AGAAGAAGTATCTTTGCAAGACCGAAGCGGAGTTAAAAGAAGCTTGGTTTCCTGGAGATTTAGGGTATGCAACCCGGATTCCTGGTGACATGCTTGTTCT
CACAATTGTTCTTTGCTACTCTGTCATAGCCCCTCTGATTATTCCATTTGGAGTGGTGTACTTTGGCCTGGGATGGCTTGTCCTTAGGAATCAGGCACTC
AAAGTATATGCTCCATCCTTTGAGACCTATGGCAGGATGTGGCCCCACATCCACACAAGAGTCATTGCTGCTCTGATATTATTCCAAGTTACAATGTTCG
GTTATTTTGTGGTGAAGAAATTCTCCTTCAGTACTTTCTTACTAATTCCACTGCCGATACTTTCCTTGCTGTTCGCCTATGTCTGTCACAAGAAATTCTA
TCGATCTTTCTCTGACACAGCCCTTGAAGTTGCTTGCCGTGAATTGAAGGAAATTCCTAACATGGAACGCATCTACAGATCTTTTATCCCACCAAGCTTG
AGCTCTGAAAAGGCCGATGATGACCACTTCGAAGATGCATTATCACAAGTTTCAAGAGTCGGATCGTTTGCATGA
AA sequence
>Potri.001G358300.1 pacid=42788852 polypeptide=Potri.001G358300.1.p locus=Potri.001G358300 ID=Potri.001G358300.1.v4.1 annot-version=v4.1
MDFSSFLTSLGTSFLIFVVLMLLFTWLSRKPGNSFVYYPNRILKGLEPWDGASRSRNPFAWIREAFSSSEQDVINMSGVDTAVYFVFLSTALAILVLSGL
VLLPVLLPVAATDDNVKTQKDKGNQSFSDIDKLLMGNVKGGSPRLWAFLIATYWVSLVTYFLLWKAYVHVSGLRANALMSPELTPEQFAVLVRDIPPVPE
GRTRKEQVDSYFKSIYPETFYRSMVVTNNKEVNKIYIELEGYKKKLAHAEAVYDESKKTGKPEGLRPTIRTGPLGIVGRKVDSIEHYNEKIKELIPKLEA
EQKVTLRENQQACAFAFFTNRVTAASAAQSLHAQMVDTWTVMEAPEPRQIIWSNLKIKYFQRIIRQYVVCFIVALTILFYMIPIGLISALTTLDNLKKIL
PFLKPIVNIVAVKTVLEAYLPQIALIVFLALLPKLLLALSKAEGIPSVGHAVRATSGKYFYFTILNVFIGVTLGGTLFTTFKSIEEKPNSIVSLLASSLP
GNATFFLTFVALKFFVGYGLELSRIVPLIIFHLKKKYLCKTEAELKEAWFPGDLGYATRIPGDMLVLTIVLCYSVIAPLIIPFGVVYFGLGWLVLRNQAL
KVYAPSFETYGRMWPHIHTRVIAALILFQVTMFGYFVVKKFSFSTFLLIPLPILSLLFAYVCHKKFYRSFSDTALEVACRELKEIPNMERIYRSFIPPSL
SSEKADDDHFEDALSQVSRVGSFA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G30360 ERD4 early-responsive to dehydratio... Potri.001G358300
[exp]
0 1
AT1G66480 PMI2 plastid movement impaired 2 (.... Potri.017G128800
[exp]
57.48 0.7152

Potri.001G358300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.