Plant FIBer expression Database

Potri.001G358400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G34640 608 / 0 HMR, PTAC12 HEMERA, plastid transcriptionally active 12 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038523
[exp]
642 / 0 AT2G34640 585 / 0.0 HEMERA, plastid transcriptionally active 12 (.1)
Lus10023283
[exp]
630 / 0 AT2G34640 571 / 0.0 HEMERA, plastid transcriptionally active 12 (.1)
PFAM info
Representative CDS sequence
>Potri.001G358400.4 pacid=42790797 polypeptide=Potri.001G358400.4.p locus=Potri.001G358400 ID=Potri.001G358400.4.v4.1 annot-version=v4.1
ATGGCTTCTCTATCAGCAATTTGGCTTTATCATGCAGATAGAGGATTAAGGGGCAGTATTTCTGCTGATAGCGTTGTTAATGGGAAGCCACGTTTCAATC
ATTTTTTCCAGACGCCATTTATAGGCTCTTTTCCAGCTGGAACTTTGGAAGTTCGTAAGGCTCCGTCACTGCCTTGTATAAAGTGTGAGAAGAAGGATGA
GAACGTTGAGCATGTATATGTTGAGCTTCCTCCCTACCATAGCTATATGGACTCAACATCTGGGCAGCTTGAACCGGCATCTGGTGCTCGTGCTAGTATT
CCGGACCAGGAGTACTGGCCAGAAGGCACTGCTGATCGAGTTAGGGCTGCCAGGGCTCCTGAACCAACAGGATTGTCTGCAGGATCTCCATCATATGGCA
AAAAGCCTGGAAGCAGGAGGAAAAAGTATAAAGCTTCAGTGGCTGCTCCTGAATCTTCTGAAGCAAGCATAGAATTCATTGATTCAGAGGCACTTGAAAG
TTATGAGGAAATGAAAGAGGAACCTAAAGATGACTCATCTGACTATGTAATATATGATACAGAACCTGAGGAAGAAGATACCGGATATGAGTTAGACAAG
AAACTGGGGCGTCCGCATCCCTTTATTGATCCAAAAGTGAAGAAGCCAATCGAGGGAATTCTTCCACAGGAAGAATTATGGTGGAACTGGCGAAATCCAG
AGAATGAACAGTGGTCCAGATGGCAAAGGAGGAAGCCTGATGTTGAAACGGTTTTTCTCAAAGCAATGGCTGAAACTGGGCAGGTGAAGCTTTATGGTAA
GGAACCAACATTAACGGAGGCTTCTCTTTACAGAGCTAGAAAACATCTTTACAAGGAAGAACGACTTGAAGCTGAACAAAAGAGACTGGAAAGGATAGGT
CCAATGGGATACTACTCGGAATGGGTGAAAGCATGGAAGAGAGACACTTCACGAGAAGCTATTCAGAAGCATTTTGAAGAGACCGGTGAAGATGAAAATG
CTCAACTAATTGCAATGTTTTGCCATCAAACAGATAGAGAATTTCGCATAATGATGGGGACTGATGTTCGTATTCGTAGAGATCCTTTGGCAATGCGAAT
GCGAGAGGATCTAATAAAGCAAATTTGGGGTGGAGATCCTGTTTACCCAACCGTCAACTACATTCAAGATCCAAATGAAATTATTGATTACAGGGGTCCA
GATTTTCATGAACCAACACCCAATATGCTGGATTACCTGAAAGAACATGGAAAAATCATATCTAGGAAGGAGCTTGAAAAAATTCTGGCAAAAGAGAAGA
CGGAACAACTTGAGATGACAGACATTGATGAAGCTATGGCACGAGCTGTTGACATTGGTGAAAATGATGGCGAGGGAGAGGATAGTGAGGTTGATGGAGA
AGAAGAGGAAGAGGAGGAAGAAGACGAAAAAATTACTAGAAATTGGAGTGTTTATAAAACTACTCCCCAGGCTCGAAAATCAAAGGATAAACCTAAAAAA
GAGGGTCCGTTGAGTCTTGAAGAGGCAATTGATGATTCTGAGAACTTAACTGATTTCCTCATGGACTTTGAACAAGACGAGTGA
AA sequence
>Potri.001G358400.4 pacid=42790797 polypeptide=Potri.001G358400.4.p locus=Potri.001G358400 ID=Potri.001G358400.4.v4.1 annot-version=v4.1
MASLSAIWLYHADRGLRGSISADSVVNGKPRFNHFFQTPFIGSFPAGTLEVRKAPSLPCIKCEKKDENVEHVYVELPPYHSYMDSTSGQLEPASGARASI
PDQEYWPEGTADRVRAARAPEPTGLSAGSPSYGKKPGSRRKKYKASVAAPESSEASIEFIDSEALESYEEMKEEPKDDSSDYVIYDTEPEEEDTGYELDK
KLGRPHPFIDPKVKKPIEGILPQEELWWNWRNPENEQWSRWQRRKPDVETVFLKAMAETGQVKLYGKEPTLTEASLYRARKHLYKEERLEAEQKRLERIG
PMGYYSEWVKAWKRDTSREAIQKHFEETGEDENAQLIAMFCHQTDREFRIMMGTDVRIRRDPLAMRMREDLIKQIWGGDPVYPTVNYIQDPNEIIDYRGP
DFHEPTPNMLDYLKEHGKIISRKELEKILAKEKTEQLEMTDIDEAMARAVDIGENDGEGEDSEVDGEEEEEEEEDEKITRNWSVYKTTPQARKSKDKPKK
EGPLSLEEAIDDSENLTDFLMDFEQDE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G34640 HMR, PTAC12 HEMERA, plastid transcriptiona... Potri.001G358400
[exp]
0 1
AT1G62680 Pentatricopeptide repeat (PPR)... Potri.016G136700
[exp]
1.00 0.9723
AT2G02740 WHY3, ATWHY3, P... PLASTID TRANSCRIPTIONALLY ACTI... Potri.010G092500
[exp]
1.73 0.9673
AT1G11290 CRR22 CHLORORESPIRATORY REDUCTION22,... Potri.003G191000
[exp]
4.47 0.9671
AT1G70200 RNA-binding (RRM/RBD/RNP motif... Potri.008G146700
[exp]
4.47 0.9662
AT5G52520 PRORS1, OVA6 PROLYL-TRNA SYNTHETASE 1, OVUL... Potri.017G142500
[exp]
4.69 0.9713
AT5G63630 P-loop containing nucleoside t... Potri.014G097700
[exp]
12.48 0.9593
AT5G18570 EMB3138, ATOBGL... EMBRYO DEFECTIVE 3138, EMBRYO ... Potri.002G029600
[exp]
14.28 0.9550
AT1G33330 Class I peptide chain release ... Potri.019G063800
[exp]
14.66 0.9424
AT2G45330 TRPT, EMB1067 2' tRNA phosphotransferase, em... Potri.013G094500
[exp]
14.86 0.9515
AT4G26370 antitermination NusB domain-co... Potri.003G222900
[exp]
17.43 0.9512

Potri.001G358400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.