Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ARF6.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30330 819 / 0 ARF ARF6 auxin response factor 6 (.1.2) AT5G37020 683 / 0 ARF ARF8, ATARF8 auxin response factor 8 (.1.2) AT1G19220 518 / 6e-168 ARF IAA22, ARF11, ARF19 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) AT5G20730 499 / 3e-160 ARF MSG1, IAA21, BIP, ARF7, IAA25, IAA23, TIR5, NPH4 MASSUGU 1, indole-3-acetic acid inducible 25, indole-3-acetic acid inducible 23, indole-3-acetic acid inducible 21, BIPOSTO, AUXIN RESPONSE FACTOR 7, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1.2.3) AT1G19850 479 / 3e-155 ARF IAA24, ARF5, MP MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) AT5G62000 400 / 7e-126 ARF ORE14, HSS, ARF1-BP, ARF2 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) AT1G59750 387 / 6e-123 ARF ARF1 auxin response factor 1 (.1.2.3.4) AT5G60450 361 / 8e-112 ARF ARF4 auxin response factor 4 (.1) AT3G61830 355 / 2e-111 ARF ARF18 auxin response factor 18 (.1) AT2G46530 349 / 2e-109 ARF ARF11 auxin response factor 11 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G091900 [exp] 1496 / 0 AT1G30330 830 / 0.0 auxin response factor 6 (.1.2) Potri.005G207700 [exp] 1143 / 0 AT5G37020 694 / 0.0 auxin response factor 8 (.1.2) Potri.002G055000 [exp] 1129 / 0 AT1G30330 775 / 0.0 auxin response factor 6 (.1.2) Potri.004G078200 [exp] 730 / 0 AT5G37020 1057 / 0.0 auxin response factor 8 (.1.2) Potri.017G141000 [exp] 719 / 0 AT5G37020 1048 / 0.0 auxin response factor 8 (.1.2) Potri.006G138500 [exp] 533 / 4e-173 AT1G19220 734 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Potri.006G077800 [exp] 531 / 1e-172 AT1G19220 664 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Potri.018G145800 [exp] 530 / 2e-172 AT1G19220 665 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Potri.018G063000 [exp] 514 / 1e-166 AT1G19220 735 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033597 [exp] 1068 / 0 AT1G19220 842 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Lus10033598 [exp] 944 / 0 AT5G37020 799 / 0.0 auxin response factor 8 (.1.2) Lus10017641 [exp] 784 / 0 AT1G30330 810 / 0.0 auxin response factor 6 (.1.2) Lus10017640 [exp] 767 / 0 AT5G37020 762 / 0.0 auxin response factor 8 (.1.2) Lus10010969 [exp] 715 / 0 AT5G37020 1013 / 0.0 auxin response factor 8 (.1.2) Lus10031354 [exp] 715 / 0 AT5G37020 1013 / 0.0 auxin response factor 8 (.1.2) Lus10007386 [exp] 709 / 0 AT5G37020 1021 / 0.0 auxin response factor 8 (.1.2) Lus10020804 [exp] 688 / 0 AT5G37020 913 / 0.0 auxin response factor 8 (.1.2) Lus10027600 [exp] 523 / 2e-170 AT1G19220 670 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Lus10024320 [exp] 486 / 1e-160 AT1G19850 724 / 0.0 MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF02309 [poplar] [flax] AUX_IAA AUX/IAA family CL0405 [poplar] [flax] DNA_b-psBarrel PF02362 [poplar] [flax] B3 B3 DNA binding domain CL0405 [poplar] [flax] PF06507 [poplar] [flax] Auxin_resp Auxin response factor
Representative CDS sequence Show only first row Show all	>Potri.001G358500.2 pacid=42792385 polypeptide=Potri.001G358500.2.p locus=Potri.001G358500 ID=Potri.001G358500.2.v4.1 annot-version=v4.1 ATGAGGCACTCTTCAGCTGGTTTTAATCCACAAACCCACGAAGTGGAAAAGCGGGTGCTGAATTCTGAACTATGGCACGCATGTGCGGGTCCTCTTGTTT CTCTTCCTGCTGTTGGAAGCCGCGCTGTTTATTTCCCACAAGGTCACAGTGAGCAGGTTGCCGCATCAACGAACAAGGAAGTAAATGCCCAGATTCCAAG CTACCCAAGCTTGCCCGCACAACTTATCTGTCAGCTTCACAATGTGACCATGCATGCAGATGTTGAGACGGATGAAGTTTATGCACAAATGACCTTGCAG CCACTAAGTCCGCAAGAGCAAAAGGCTGCCTACCTTCCAGCAGATATGGGCACCCCTAGCAAACAGCCAACCAATTATTTCTGTAAGACTTTGACTGCCA GTGACACAAGTACTCACGGAGGATTCTCTGTCCCTCGGCGGGCAGCCGAGAAAGTGTTCCCACCATTGGATTTTTCTCAGCATCCTCCAGCTCAAGAGTT GATTGCTAGGGATTTGCATGATAATGAATGGAAATTCAGACACATATTTCGCGGCCAGCCGAAAAGACACCTTCTTACAACTGGGTGGAGTGTGTTCGTG AGTGCTAAAAGACTTGTTGCTGGGGATTCAGTGCTTTTTATCTGGAATGAAAAGAATCAGCTACTACTTGGCATTAGGCGCGCTACTCGACCGCAAACAG TGATGCCTTCATCAGTCTTATCAAGCGATAGCATGCACTTGGGCCTTCTTGCTGCTGCAGCTCATGCAGCTGCAACAAATAGCCGTTTTACCATATTTTA CAATCCAAGGGCTAGTCCATCAGAGTTCGTCATACCACTGGCCAAATATCTTAAAGCTGTTTATTATACTCGTGTGTCTGTTGGCATGCGCTTTAGGATG ATGTTCGAAACAGAAGAATCAAGTGTCCGTCGCTACATGGGTACAATAACTGGCATAAGTGACTTGGATGTTGTTAGGTGGCCAAATTCACAATGGCGTT CAGTCAAGGTTGGCTGGGATGAGTCTACAGATGGGGAGAGGCAGCCAAGAGTTTCTCTTTGGGAGATTGAACCACTAACCACTTTCCCTACATATCCATC TCCATTTCCCCTAAGGCTCAAGCGGCCATGGCCACCAGGACTACCCTCTTTCCATGGTTTAGGCATCAAGGATGATGATCTAGGAAAGAACCCGTCCCTT ATGTGGCTACGAGGAGATGGAGACTGTGGATATCAATCTTTGAACTTTCAGGGAACTGGAGTTTCACCATGGGTGCAGCCAAGAGTTGATGCTTCAATGC TAGGTTTGCAAAATGATGTCTACCAAACTATGGCTACTGCTGCCTTTCAGGAAATGAGGACTCTAGATCCTTCCAAATCATCAGCTGCATCCTTTTTGCA ATTCCAGCAACACCAGAATCTCCCAACCAGGAGTGCTGCTTTAATGCAGCCACGTATGTTGCAGCAGTCTCCTCCTCAACAGACCTTTTTTCAAGGTGTT CAAGAGAATAAACATCAGTCTCAGACTCCATCCCAGTCACACCTTATTCAGCAACAACTGCTGCATCATCACTTACTTGACAGTCCACAGCAGCAGCAGC AGCCATTTCTGCAACAACAGCAACTGGCTGACCAACAGATCCCAAATGGTGTCTCTGCAATATCTCAATATGCTTCAGCCTCTCAATCCCTGACACCACC ATTGCAAGCTATTTCACTGTGCCAGCAGCACAGCTATTCTGACTCAAATGGGAACCCTGCGACGAGCCCTGCTGTTTCTTCCCTGCAAAGTCTTTTGGAC TCTTTTCCCCCGAATGAATCATCTCATTTGCTAAGTTGGCCTAGAATAAATCCCTTGGTAACTTCATCTGGCTGGCCCTCAAAGCGAGCTGCTGTTGAAT CTCTTACTTCCTCTGGAGCTCCTCAATGCATGGTGACCCAAGTGGAGCAGCTGGGGCCACTTCACACAAGCATCACTCCTAGCTCTGTTTCTTTGCCACC CTTTCCTGGAAGAGAATGTTCAATAGACCGGGATGGTGGCACTGATCAACAAAACCATCTTCTATTCGGTGTCAACATAGAGCCATCATCTCTTCTACTG CAGAATGGAATGTCAAGTCTCAGGGGAGTTGGAAGTGATAGTGATTCCACAACTATACCTTTCTCTTCTAATTACATAAGTACTGCAGGCACCAATTTCT CGCTTAATCCAGCAATGACACCTTCAAGTTGCATTGATGATTCATGTTTCCTGCAATCCACAGAAAATGCGAGCCAAGGAAATCCACCAACCAGAACCTT TGTTAAGGTTTACAAGTCAGGGTCCTTTGGTAGGTCACTGGATATCACCAAATTCAGCAGCTACAATGAGTTGCGCAGTGAGCTTTCTCGCATGTTTGGC CTCGAAGGCCAACTGGAGGACCCCCTGAGATCAGGCTGGCAGCTTGTATTCATCGACCGGGAGAATGATGTTCTTCTCCTTGGTGATGGCCCCTGGCCGG AATTTGTAAACAGTGTGTGGTACATCAAAATACTCTCACCACAAGAAGTACAGCAAATGGGAAAACGAGGTTTAGAGCTTCTGAACTCTTTTCCAATTCA GAGGCTTTCCAATGGCAGCTGTGATGACTATGCAAACCGGCAGGATTCAAAATCTTCGAGCACTGGTATAACTTCTGTGGGGTCTTTGGACTACTGA
AA sequence Show only first row Show all	>Potri.001G358500.2 pacid=42792385 polypeptide=Potri.001G358500.2.p locus=Potri.001G358500 ID=Potri.001G358500.2.v4.1 annot-version=v4.1 MRHSSAGFNPQTHEVEKRVLNSELWHACAGPLVSLPAVGSRAVYFPQGHSEQVAASTNKEVNAQIPSYPSLPAQLICQLHNVTMHADVETDEVYAQMTLQ PLSPQEQKAAYLPADMGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQHPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFV SAKRLVAGDSVLFIWNEKNQLLLGIRRATRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYLKAVYYTRVSVGMRFRM MFETEESSVRRYMGTITGISDLDVVRWPNSQWRSVKVGWDESTDGERQPRVSLWEIEPLTTFPTYPSPFPLRLKRPWPPGLPSFHGLGIKDDDLGKNPSL MWLRGDGDCGYQSLNFQGTGVSPWVQPRVDASMLGLQNDVYQTMATAAFQEMRTLDPSKSSAASFLQFQQHQNLPTRSAALMQPRMLQQSPPQQTFFQGV QENKHQSQTPSQSHLIQQQLLHHHLLDSPQQQQQPFLQQQQLADQQIPNGVSAISQYASASQSLTPPLQAISLCQQHSYSDSNGNPATSPAVSSLQSLLD SFPPNESSHLLSWPRINPLVTSSGWPSKRAAVESLTSSGAPQCMVTQVEQLGPLHTSITPSSVSLPPFPGRECSIDRDGGTDQQNHLLFGVNIEPSSLLL QNGMSSLRGVGSDSDSTTIPFSSNYISTAGTNFSLNPAMTPSSCIDDSCFLQSTENASQGNPPTRTFVKVYKSGSFGRSLDITKFSSYNELRSELSRMFG LEGQLEDPLRSGWQLVFIDRENDVLLLGDGPWPEFVNSVWYIKILSPQEVQQMGKRGLELLNSFPIQRLSNGSCDDYANRQDSKSSSTGITSVGSLDY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G30330	ARF	ARF6	auxin response factor 6 (.1.2)		Potri.001G358500 [exp]	0	1	Pt-ARF6.3
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Potri.004G078200 [exp]	6.00	0.7241
AT1G50660			unknown protein		Potri.004G015800 [exp]	8.00	0.6917
AT1G71010		FAB1C	FORMS APLOID AND BINUCLEATE CE...		Potri.010G113700 [exp]	9.48	0.6753
AT2G41550			Rho termination factor (.1)		Potri.006G046700 [exp]	10.09	0.6829
AT1G48410		AGO1	ARGONAUTE 1, Stabilizer of iro...		Potri.015G029000 [exp]	15.42	0.6479
AT1G17500			ATPase E1-E2 type family prote...		Potri.001G197500 [exp]	16.91	0.6556
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Potri.003G191301 [exp]	17.66	0.6525
AT3G01840			Protein kinase superfamily pro...		Potri.001G332800 [exp]	28.91	0.6101
AT5G43710			Glycosyl hydrolase family 47 p...		Potri.008G160900 [exp]	29.88	0.6418
AT3G48670		RDM12, IDN2	RNA-DIRECTED DNA METHYLATION 1...		Potri.010G202700 [exp]	33.91	0.6289

Compare expression of checked genes

Potri.001G358500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.