Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30320 448 / 3e-153 Remorin family protein (.1) AT2G02170 199 / 2e-57 Remorin family protein (.1.2) AT1G67590 152 / 2e-41 Remorin family protein (.1.2) AT1G53860 76 / 1e-14 Remorin family protein (.1) AT3G61260 61 / 2e-10 Remorin family protein (.1) AT3G48940 58 / 1e-09 Remorin family protein (.1) AT3G57540 59 / 2e-09 Remorin family protein (.1) AT2G45820 56 / 1e-08 Remorin family protein (.1) AT2G41870 54 / 8e-08 Remorin family protein (.1) AT5G23750 52 / 1e-07 Remorin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G098000 [exp] 231 / 3e-69 AT2G02170 434 / 2e-148 Remorin family protein (.1.2) Potri.008G144300 [exp] 222 / 8e-66 AT2G02170 431 / 5e-147 Remorin family protein (.1.2) Potri.008G178300 [exp] 160 / 5e-44 AT1G67590 306 / 1e-102 Remorin family protein (.1.2) Potri.010G056800 [exp] 152 / 4e-41 AT1G67590 253 / 8e-82 Remorin family protein (.1.2) Potri.001G163000 [exp] 100 / 4e-22 AT1G53860 333 / 6e-110 Remorin family protein (.1) Potri.006G053200 [exp] 64 / 5e-11 AT3G57540 196 / 2e-61 Remorin family protein (.1) Potri.002G125200 [exp] 65 / 6e-11 AT1G45207 384 / 9e-127 Remorin family protein (.2) Potri.014G027900 [exp] 65 / 1e-10 AT1G45207 442 / 1e-149 Remorin family protein (.2) Potri.016G054400 [exp] 63 / 1e-10 AT2G41870 206 / 7e-66 Remorin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023284 [exp] 460 / 6e-158 AT1G30320 422 / 9e-144 Remorin family protein (.1) Lus10038522 [exp] 315 / 7e-105 AT1G30320 296 / 2e-98 Remorin family protein (.1) Lus10038521 [exp] 153 / 9e-43 AT1G30320 128 / 4e-34 Remorin family protein (.1) Lus10003936 [exp] 78 / 5e-15 AT1G53850 463 / 9e-162 ARABIDOPSIS 20S PROTEASOME ALPHA SUBUNIT E1, 20S proteasome alpha subunit E1 (.1.2) Lus10015817 [exp] 69 / 2e-12 AT1G67590 280 / 5e-92 Remorin family protein (.1.2) Lus10017811 [exp] 63 / 4e-11 AT3G61260 199 / 5e-65 Remorin family protein (.1) Lus10026302 [exp] 62 / 9e-11 AT3G57540 209 / 1e-67 Remorin family protein (.1) Lus10018840 [exp] 62 / 1e-10 AT3G61260 206 / 1e-67 Remorin family protein (.1) Lus10037454 [exp] 63 / 3e-10 AT1G53850 464 / 8e-163 ARABIDOPSIS 20S PROTEASOME ALPHA SUBUNIT E1, 20S proteasome alpha subunit E1 (.1.2) Lus10027460 [exp] 60 / 4e-10 AT3G61260 192 / 2e-62 Remorin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03763 [poplar] [flax] Remorin_C Remorin, C-terminal region
Representative CDS sequence Show only first row Show all	>Potri.001G358600.1 pacid=42790740 polypeptide=Potri.001G358600.1.p locus=Potri.001G358600 ID=Potri.001G358600.1.v4.1 annot-version=v4.1 ATGGATTACGAAAGGATACACAAAGTGCAGAGTGGTATAATATCTCCTAGCAAGCTGAGGATGAAGCTCGTAGGACCTCACCATCACAGAAAGAAGGATG GGTCAAACAGCAATTCCTCAAGAACTTCTCCCTCCAAGCTTCAGGATAACGAATTTGTCAAAAACAGCTTATTAGCTTCCGATTTTGGAGATTTCGGTGA AGAAGTTGCAGCTCTCGGCTTAGAGGTTGCATCTGTTAACTTTCCGAGTGAGGCGGTGTTGGACCTCTGCCAAGCTGACCTGCCGATGGAGACGGTGCCC AAGGAAATTGGTGACGCTGGTCGTGTTAAAATGCAGCCATTCTCAAAGTGTGAAAAGGGTAATTCAAGTGCAGTTCACCCTGTCAGGACAGTAGAAGATG AGAACCTTGATTACGATAGCAATGCTAGTTCGTCCAGCTTTGAGTTTCATAATGAGAGATCGGTAAACAATCAATTTTCAAAGCGATTCTCAAGGCCTAT GTCTTCTAAGTGGAATGATGCAGAGAAATGGATAATGAAGAGGCAGAATGTACAACCCAATTATGTTAAGAAGAATAATAATTTACACAACCAAGCTAAT AGGAATCCAGTAACAAGTGTGGACAGGGTTGCTCCTGCGTTGTCAAATTATGATCCAAGATCATCATATAGCAGGGTCGCAGACACGAAGCTTATAGATT TCTGTCTGCCTTCTTATCAACAGGCGTTTGAAAAATTCTCCTTCATTCCTCCAGGATCTCTCACAATTTCTGGTCAAGAAAATGGGGTTGACACCCTAGT CGATCGATGTGCTCAGAGTACAGACTTGAAGGAAGTGGATCAAAGGGAATTATCTTGTACAAAAATCTCAACACAAGATTCAGCAGTTGTTCCTGTCGTA AGATCAGTCTGTATGAGGGATATGGGAACAGAAATGACCCCTGTTACAAGTCTAGAGCCTTCTAGGACTGCTACACCTGTAGACGCAACAACTCCACTCC GCAGCCCAACTTCTTCTATCCCATCTACTCCCCAAAGAAGGGCACCAGCACCCACAACAACAGATCACTGCTCCAATGATGATACACAACACGCCACTGG AAATGGCAAAATAGAATTGACTGAGCAAGAATTGAAACTAAAGACGAGGAGAGAGATTGAGGCCCTCGGTGTTCAGCTTGGCAAGATGAATATTGCTGCT TGGGCAAGTAAAAATGACCAGCAAAAACATGCATCTTCACTTGAAACTACTGAAATGGAGAACGAGCAAATCGAATTTGTAAAACGTGCTGCTGCATGGG AGGAAGCTGAACAATCTAAACACACAGCAAGATATAAACGTGAAGAAATCAAGATCCAAGCATGGGAAAGTCAACGGAAAGTGAAACTAGAAGCAGAGAT GCGGAGAATAGAGGCTCGAGTTGAACAAATGCGAGCCCAAGCACATGCGAAGATGGTGAAGAAGATCGCAATGACAAGGCAGCGATCGGAAGAAAAATGG GTGGCAGCTGAAGCTAGAAAAAATCAAGATGCAGAAAGAACTGCAGCCCAAGCAGAATATATTCGTCAAACAGGGCGAATGCCATCATCTAATTACATTT GCTGTGGTTGGTTTTGA
AA sequence Show only first row Show all	>Potri.001G358600.1 pacid=42790740 polypeptide=Potri.001G358600.1.p locus=Potri.001G358600 ID=Potri.001G358600.1.v4.1 annot-version=v4.1 MDYERIHKVQSGIISPSKLRMKLVGPHHHRKKDGSNSNSSRTSPSKLQDNEFVKNSLLASDFGDFGEEVAALGLEVASVNFPSEAVLDLCQADLPMETVP KEIGDAGRVKMQPFSKCEKGNSSAVHPVRTVEDENLDYDSNASSSSFEFHNERSVNNQFSKRFSRPMSSKWNDAEKWIMKRQNVQPNYVKKNNNLHNQAN RNPVTSVDRVAPALSNYDPRSSYSRVADTKLIDFCLPSYQQAFEKFSFIPPGSLTISGQENGVDTLVDRCAQSTDLKEVDQRELSCTKISTQDSAVVPVV RSVCMRDMGTEMTPVTSLEPSRTATPVDATTPLRSPTSSIPSTPQRRAPAPTTTDHCSNDDTQHATGNGKIELTEQELKLKTRREIEALGVQLGKMNIAA WASKNDQQKHASSLETTEMENEQIEFVKRAAAWEEAEQSKHTARYKREEIKIQAWESQRKVKLEAEMRRIEARVEQMRAQAHAKMVKKIAMTRQRSEEKW VAAEARKNQDAERTAAQAEYIRQTGRMPSSNYICCGWF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G30320			Remorin family protein (.1)		Potri.001G358600 [exp]	0	1
AT5G03230			Protein of unknown function, D...		Potri.006G127900 [exp]	3.46	0.8823
AT2G01150		RHA2B	RING-H2 finger protein 2B (.1)		Potri.005G081300 [exp]	7.21	0.8981
AT1G68460		ATIPT1	Arabidopsis thaliana isopenten...		Potri.008G121500 [exp]	8.77	0.8881
AT1G73325			Kunitz family trypsin and prot...		Potri.019G122100 [exp]	11.87	0.8966
AT1G73325			Kunitz family trypsin and prot...		Potri.019G124500 [exp]	13.96	0.8942
AT5G67550			unknown protein		Potri.017G023400 [exp]	15.09	0.8085
AT5G06710	HD	HAT14	homeobox from Arabidopsis thal...		Potri.009G023600 [exp]	18.22	0.7916
AT3G62010			unknown protein		Potri.014G109900 [exp]	18.33	0.8197
AT2G02010		GAD4	glutamate decarboxylase 4 (.1)		Potri.010G100500 [exp]	20.78	0.8561
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Potri.002G098400 [exp]	21.21	0.8938	AT2.2

Compare expression of checked genes

Potri.001G358600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.