Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PPX1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55260 610 / 0 EP128, PPX-2, PPX2 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1) AT4G26720 597 / 0 PPX-1, EP129, EP124, PPX1 PROTEIN PHOSPHATASE X-1, protein phosphatase X 1 (.1) AT1G59830 429 / 2e-152 PP2A-1 protein phosphatase 2A-2 (.1.2) AT2G42500 428 / 5e-152 PP2A-3, PP2A-4 protein phosphatase 2A-3 (.1.2.3) AT1G10430 427 / 6e-152 PP2A-2 protein phosphatase 2A-2 (.1) AT1G69960 427 / 7e-152 PP2A serine/threonine protein phosphatase 2A (.1) AT3G58500 427 / 9e-152 PP2A-4, EP7, PP2A-3 protein phosphatase 2A-4 (.1) AT1G50370 395 / 5e-139 AtFYPP1 flower- specific, phytochrome-associated protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT3G19980 393 / 2e-138 STPP, ATFYPP3, EMB2736 SERINE/THREONINE PROTEIN PHOSPHATASE, EMBRYO DEFECTIVE 2736, "flower-specific, phytochrome-associated protein phosphatase 3", flower-specific, phytochrome-associated protein phosphatase 3 (.1) AT2G39840 283 / 1e-94 TOPP4 type one serine/threonine protein phosphatase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G092200 [exp] 625 / 0 AT5G55260 613 / 0.0 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1) Potri.015G068300 [exp] 429 / 1e-152 AT1G10430 606 / 0.0 protein phosphatase 2A-2 (.1) Potri.010G039700 [exp] 429 / 1e-152 AT1G10430 609 / 0.0 protein phosphatase 2A-2 (.1) Potri.008G191600 [exp] 429 / 3e-152 AT1G10430 610 / 0.0 protein phosphatase 2A-2 (.1) Potri.003G217900 [exp] 429 / 3e-152 AT2G42500 627 / 0.0 protein phosphatase 2A-3 (.1.2.3) Potri.012G073300 [exp] 427 / 9e-152 AT1G10430 605 / 0.0 protein phosphatase 2A-2 (.1) Potri.001G007800 [exp] 427 / 1e-151 AT2G42500 628 / 0.0 protein phosphatase 2A-3 (.1.2.3) Potri.016G062000 [exp] 426 / 3e-151 AT3G58500 622 / 0.0 protein phosphatase 2A-4 (.1) Potri.006G196100 [exp] 424 / 2e-150 AT3G58500 620 / 0.0 protein phosphatase 2A-4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016576 [exp] 621 / 0 AT5G55260 615 / 0.0 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1) Lus10042160 [exp] 430 / 4e-152 AT1G10430 611 / 0.0 protein phosphatase 2A-2 (.1) Lus10033122 [exp] 428 / 4e-152 AT1G10430 606 / 0.0 protein phosphatase 2A-2 (.1) Lus10013287 [exp] 427 / 2e-151 AT1G10430 617 / 0.0 protein phosphatase 2A-2 (.1) Lus10030810 [exp] 427 / 2e-151 AT1G10430 617 / 0.0 protein phosphatase 2A-2 (.1) Lus10039185 [exp] 423 / 5e-150 AT2G42500 624 / 0.0 protein phosphatase 2A-3 (.1.2.3) Lus10025174 [exp] 422 / 1e-149 AT2G42500 619 / 0.0 protein phosphatase 2A-3 (.1.2.3) Lus10036657 [exp] 420 / 1e-148 AT1G10430 598 / 0.0 protein phosphatase 2A-2 (.1) Lus10016053 [exp] 415 / 2e-146 AT2G42500 610 / 0.0 protein phosphatase 2A-3 (.1.2.3) Lus10013754 [exp] 411 / 2e-145 AT2G42500 601 / 0.0 protein phosphatase 2A-3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [poplar] [flax] Calcineurin PF00149 [poplar] [flax] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Potri.001G358700.1 pacid=42792806 polypeptide=Potri.001G358700.1.p locus=Potri.001G358700 ID=Potri.001G358700.1.v4.1 annot-version=v4.1 ATGTCAGACCTCGACAGACAAATAGAGCAACTGAAGAGGTGCGAGCCCCTGAAGGAATCGGAAGTGAAAGCTCTTTGCCTCAAAGCTATGGAAATCCTCG TCGAAGAGAGCAACGTTCAACGCGTCGATGCTCCCGTCACCATATGTGGAGATATCCATGGACAGTTTTATGACATGAAAGAGCTTTTCAAGGTGGGAGG GGATTGCCCGAAGACTAGTTACTTGTTTCTTGGAGATTTTGTTGATAGAGGATATTACTCTGTTGAGACATTTCTGCTTCTTTTAGCCCTTAAGGTGAGA TATCCAGATCGGATAACACTCATTAGAGGGAATCATGAGAGCCGTCAGATAACACAGGTGTATGGATTTTATGATGAGTGTTTGCGTAAATACGGCTCAG TGAATGTTTGGAGATATTGCACCGATATATTTGATTACATGAGTCTGTCAGCTCTCATTGAGAATAAGGTTTTTAGTGTTCATGGTGGTCTCTCTCCTGC TATATCAACATTGGATCAGATTCGAACAATTGATAGGAAGCAAGAAGTACCTCATGATGGTGCTATGTGTGATCTTCTCTGGTCAGATCCTGAAGATATT GTTGATGGTTGGGGGTTGAGTCCACGTGGTGCTGGTTTTCTATTTGGTGGTAGTGTGGTCACTTCTTTCAACCACTCTAACAATATTGATTACATATGTC GTGCTCATCAGTTGGTGATGGAAGGGTATAAGTGGATGTTCAGGAACCAAATAGTCACTGTTTGGTCAGCTCCAAACTACTGTTACAGATGCGGTAATGT TGCTGCAATCCTTGAGCTGGATGAGAATCTTAACAAGCAGTTTCGTGTGTTTGATGCTGCCCCTCCGGAATCAAGAGGTGCACCTGCCAAAAATCCAGCA CCTGATTACTTCTTATGA
AA sequence Show only first row Show all	>Potri.001G358700.1 pacid=42792806 polypeptide=Potri.001G358700.1.p locus=Potri.001G358700 ID=Potri.001G358700.1.v4.1 annot-version=v4.1 MSDLDRQIEQLKRCEPLKESEVKALCLKAMEILVEESNVQRVDAPVTICGDIHGQFYDMKELFKVGGDCPKTSYLFLGDFVDRGYYSVETFLLLLALKVR YPDRITLIRGNHESRQITQVYGFYDECLRKYGSVNVWRYCTDIFDYMSLSALIENKVFSVHGGLSPAISTLDQIRTIDRKQEVPHDGAMCDLLWSDPEDI VDGWGLSPRGAGFLFGGSVVTSFNHSNNIDYICRAHQLVMEGYKWMFRNQIVTVWSAPNYCYRCGNVAAILELDENLNKQFRVFDAAPPESRGAPAKNPA PDYFL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G55260		EP128, PPX-2, P...	PROTEIN PHOSPHATASE X -2, prot...		Potri.001G358700 [exp]	0	1	PPX1.1
AT3G02720			Class I glutamine amidotransfe...		Potri.017G143880 [exp]	23.23	0.7997
AT3G10350			P-loop containing nucleoside t...		Potri.008G037100 [exp]	28.19	0.8050
AT1G54115		ATCCX4	cation calcium exchanger 4 (.1...		Potri.003G066900 [exp]	45.23	0.7336
AT4G22220		ATISU1, ISU1	SufE/NifU family protein (.1)		Potri.015G077500 [exp]	47.69	0.7518
AT1G31340		NEDD8, ATRUB1, ...	ARABIDOPSIS THALIANA RELATED T...		Potri.007G067500 [exp]	117.60	0.7379	Pt-UBQ7.1
AT1G75390	bZIP	ATBZIP44	basic leucine-zipper 44 (.1.2)		Potri.004G158200 [exp]	132.13	0.7367
					Potri.005G096200 [exp]	142.72	0.7209
AT3G56820			unknown protein		Potri.006G026300 [exp]	156.74	0.6897
AT1G05970			RNA-binding (RRM/RBD/RNP motif...		Potri.017G030000 [exp]	209.76	0.6967

Compare expression of checked genes

Potri.001G358700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.