Plant FIBer expression Database

Potri.001G358800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G04970 494 / 1e-172 lipid-binding serum glycoprotein family protein (.1.2)
AT3G20270 427 / 8e-146 lipid-binding serum glycoprotein family protein (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G160700
[exp]
509 / 8e-179 AT1G04970 615 / 0.0 lipid-binding serum glycoprotein family protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033808
[exp]
482 / 1e-167 AT1G04970 601 / 0.0 lipid-binding serum glycoprotein family protein (.1.2)
Lus10014625
[exp]
481 / 3e-167 AT1G04970 595 / 0.0 lipid-binding serum glycoprotein family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0648 Aha1_BPI PF01273 LBP_BPI_CETP LBP / BPI / CETP family, N-terminal domain
CL0648 Aha1_BPI PF02886 LBP_BPI_CETP_C LBP / BPI / CETP family, C-terminal domain
Representative CDS sequence
>Potri.001G358800.1 pacid=42789983 polypeptide=Potri.001G358800.1.p locus=Potri.001G358800 ID=Potri.001G358800.1.v4.1 annot-version=v4.1
ATGGCACACCCTTTGTTCTTCTTAGTTGTCTGTCTTGTATTGGCTCCTGCTGCAGCTGCCCATGATCTTCAATCTAATGAAGAAGGATACATCTCTCTGC
TCTTATCCAACAAGGGAGTTGACTTTGCTAAAGACGTGCTCATAAACAAGGCAGTGTCCACCATAATCCCCCTTCAACTACCTGATATTGAAAAGTCTGT
CAAAATCCCGCTGATTGGCAAAGTACATATGATTCTTTCTAATATCACAATTTATAGCGTCAATATATCTTCTTCATATGTTGAAACTGGAAACCCAGGA
TTAGTCCTGGTTGCTTCTGGTGCTACTGCCAGCTTGAGCATGAAATGGGCTTACTCTTATAGCACCTGGTTGATTGTCATTTCAGACAGTGGAGATGCTT
CAGTTCAGGTCAAAGGTATGGAAGTGGGGCTTACTGTAGCTTTCAAAGAACAAGGAGGAACTCTTGAGCTGTCCCTTCTGGACTGTGGATGTCATGTGCA
AGATATTACCATCAAATTAAATGGGGGAGCATCCTGGCTTTATCAAGGGATAGTTGATGCTTTTCAAGGGTCAATAGGTTCTGCAGTGGAAAACGCTATT
TCCAAGAAAATCAAAGAAGAGATAGTAAAACTTGACTCCCTATTGCAGTCAATTCCAAAGCAAATCCCAATAGATCATGTTGCTGCACTGAATGCTACTT
TTGTGGACAGCCCTGTGCTGAGTAATTCTTTCATTGAACTTGAAATCAATGGTTTATTCACAGCAACTGATGATTTTGCAGTCCCCAGAAATTACAATAA
AGGAAAAAAAAGTTCTCTTTTCTACAACTGCCCTGCTAAGATGATAGGAATTTCATTACATGAAGATGTTTTTAATACTGCTGGATTAGTATACTTAAAT
GCAGGTTGTATGCACTGGATAGTTGACAAGTCTTTGAATCATTCTTTTCTAAACACTGCAGCGTGGAAATACATTTACCCCCAACTCTACCTGCAATATC
CAAACCATGACATGAGTCTTAATATTTCAGCAACTTCTTCTCCAGCAGTTAAAATTGCCAAGAATGGCATTAACGTCACCATTTACTTAGATGTGACAGT
TAATGTTTTGGATGATAGCAAAGTGATACCAGTTGCATGCATCTCGTTGGAAATTAATGCTTCATGTTCTCCACAAATTTTATGGAATAAAATAGCTGGT
ACCCTCAAGTTGAAAAGCTTTAACATGTCTTTAAAGTGGAGCGAAATTGGGAATGTCCATATGGATCTACTTCAGCCAGTAATTTTTGCTCTTCTCGAAA
CCGTCTTCATTCCATATGTAAACTTACACCTCATGAGGGGATTTCCTCTGCCACTCATTCATGGATTTTCACTCCAGAATGCTGAAATTCTTTACACAGA
ATCAAGATCATGA
AA sequence
>Potri.001G358800.1 pacid=42789983 polypeptide=Potri.001G358800.1.p locus=Potri.001G358800 ID=Potri.001G358800.1.v4.1 annot-version=v4.1
MAHPLFFLVVCLVLAPAAAAHDLQSNEEGYISLLLSNKGVDFAKDVLINKAVSTIIPLQLPDIEKSVKIPLIGKVHMILSNITIYSVNISSSYVETGNPG
LVLVASGATASLSMKWAYSYSTWLIVISDSGDASVQVKGMEVGLTVAFKEQGGTLELSLLDCGCHVQDITIKLNGGASWLYQGIVDAFQGSIGSAVENAI
SKKIKEEIVKLDSLLQSIPKQIPIDHVAALNATFVDSPVLSNSFIELEINGLFTATDDFAVPRNYNKGKKSSLFYNCPAKMIGISLHEDVFNTAGLVYLN
AGCMHWIVDKSLNHSFLNTAAWKYIYPQLYLQYPNHDMSLNISATSSPAVKIAKNGINVTIYLDVTVNVLDDSKVIPVACISLEINASCSPQILWNKIAG
TLKLKSFNMSLKWSEIGNVHMDLLQPVIFALLETVFIPYVNLHLMRGFPLPLIHGFSLQNAEILYTESRS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G04970 lipid-binding serum glycoprote... Potri.001G358800
[exp]
0 1
AT1G01490 Heavy metal transport/detoxifi... Potri.008G220100
[exp]
1.73 0.9195
AT5G59830 unknown protein Potri.001G236000
[exp]
2.23 0.8853
AT5G45110 ATNPR3, NPR3 NPR1-like protein 3 (.1) Potri.002G056500
[exp]
3.74 0.9085
AT1G34370 C2H2ZnF STOP1 sensitive to proton rhizotoxic... Potri.019G085400
[exp]
5.91 0.8337
AT5G53390 O-acyltransferase (WSD1-like) ... Potri.012G014200
[exp]
6.63 0.8599
AT3G14470 NB-ARC domain-containing disea... Potri.001G379700
[exp]
8.36 0.8691
AT3G14470 NB-ARC domain-containing disea... Potri.018G017900
[exp]
10.00 0.8877 Pt-RGA.54
AT1G79590 ATSYP52, SYP52 syntaxin of plants 52 (.1.2) Potri.006G032800
[exp]
11.48 0.8587
AT5G13660 unknown protein Potri.006G082800
[exp]
11.83 0.8636
AT3G06810 IBR3 IBA-RESPONSE 3, acyl-CoA dehyd... Potri.008G219000
[exp]
11.87 0.8281

Potri.001G358800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.