Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50620 313 / 2e-96 RING/FYVE/PHD zinc finger superfamily protein (.1) AT3G20280 281 / 3e-83 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT4G12620 45 / 0.0002 ORC1B, ATORC1B, UNE13 UNFERTILIZED EMBRYO SAC 13, origin of replication complex 1B (.1) AT2G36720 45 / 0.0003 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G054300 [exp] 44 / 0.0004 AT4G14700 1015 / 0.0 origin recognition complex 1 (.1) Potri.011G103100 [exp] 43 / 0.0008 AT3G14740 339 / 1e-115 RING/FYVE/PHD zinc finger superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005192 [exp] 493 / 4e-161 AT3G20280 272 / 1e-79 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10013301 [exp] 463 / 8e-155 AT3G20280 273 / 1e-83 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10029733 [exp] 55 / 2e-07 AT1G77250 313 / 5e-100 RING/FYVE/PHD-type zinc finger family protein (.1) Lus10042764 [exp] 54 / 3e-07 AT1G77250 301 / 1e-95 RING/FYVE/PHD-type zinc finger family protein (.1) Lus10028655 [exp] 50 / 4e-06 AT1G77250 259 / 1e-79 RING/FYVE/PHD-type zinc finger family protein (.1) Lus10000973 [exp] 49 / 1e-05 AT1G77260 652 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10031279 [exp] 44 / 0.0008 AT4G14700 1015 / 0.0 origin recognition complex 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [poplar] [flax] zf-FYVE-PHD PF00628 [poplar] [flax] PHD PHD-finger CL0390 [poplar] [flax] PF01426 [poplar] [flax] BAH BAH domain
Representative CDS sequence Show only first row Show all	>Potri.001G358900.8 pacid=42789700 polypeptide=Potri.001G358900.8.p locus=Potri.001G358900 ID=Potri.001G358900.8.v4.1 annot-version=v4.1 ATGGATCCATCGGCGGTAGATGATTGTAATAAATCTCTACCGCAATCGGACGGTGAAACTGATTTGGTTAGCGAGAAGAGACAAATGGAGAACGTAGAGA GCGAAGAATTGGCGGCTAAAAGAGCTAAAAATGGCGTTGGTGAGATACGGAAAGTGGCGGAGATAGTTCTGGTGCTATCTGCAATGGCGGGGATGAGAGG AGGGAAGAATCCGACGGACGCGGAGGTGAGATTGATGGAGGAAGCGAGGGAAAAATTGGTAGAGATTTGTCAAGATTTGTCGCCTAAGGATTTAGTGGCT AGAGACTCAATTGGGACTGTTATTGAGGATTTAGGGCTTAATTTTAAGCTTAAAGATCAACGGTTAGGGTTTCGAGGATCTAGGCTGTCCATTAAGGAGA AGCTCTCCCTTTCAAAGAGGAAGATGGAAGAGTCCAAGAAATTTGCTGCACCTTCAGCTACATATACAACTCAAATTACGCAACCGAGCTTTGGTGCAAT GCCTGAAAGCCATGGGCCATCACATGCTTTTCGCGTGCTTCCTTCAGATAAACCAAGTAATATATCAGTATCTTCTGGAATCTTTCCAGCTTCTTTGCCT GGCCATGTTTCAGCAGCAACCCCAGCATCCTCAACACTTCAACCACTCACTACTGAAGCGAAAATATCTGCTGTTTCCAGTGGGTTACCTAGCAGTCAAT TAGGAAGGGATTTGTCTTCTGTAGCATTTTCTAAAGTTGAAAAAACACAGTTTAAAGTGGAAGGGGGATCAAATGGGGCATCTTATGCTCCGCAAGTACC AGCAAATGCTTCTGCAAATCATTCACTGGTTAATGCTCCAAGTTGGTCTATGCAACCCCATTCTGCATCCTCAGGTAAATCTGCACCAGAAAACAATATG CCAAATCATAATTCTGCCAAGGTTGAGGGAGTTGCTGACTTGGGTCGGACTCGTGCAACTCAAGCAGCGAGAGATCAAACATTCAGACCATTTACACCTC AAACTCCACCTGCAAATTTGCCAAGCATACACCCGCCTATGCAAGGCGTGGAGTATGTTCAACCTCCATCGTTTATCAACAATCACAATGAAATTGCTAA AATTGTTCAGAAGCTATTACAGCCGAAGCTTCCTGAATATCCCACATGGATTCCCCCTTCGAGAGAATACATGACTACAGCAATGACTTGCCAAATATGC AAGCTTACTGTCAATGAGGTGGAAACTGTTGTTCTTTGTGATGCTTGTGAGAGTGGATTTCACATAAAATGTCGAGAAGCAATTAATCAGAAAGGAATTC CTAGAGGTGAGTGGCACTGCAGGAATTGCATGGCATTAAGCAATGGGAAGCCTTTGCCCCCTAAATATGGCCGTGTCATGAGAAGTGCAACACCACCAAA AGGGCCTTCTAATCCAGCTGGAAGTCATTCATCATTAGAGAAGAAAGCTGAAAATGTAGATCTAAAGGTCGATCAACAAAAGTCTACAAATGGTGTTCAA AATAATGCTGGATCTGGTTCTGTCAACAATGTTGAATCAGCATCTGATTCAAGGATTTCTGGTGAAAGAGAAATGCCAAGAGATGGTATCACATCGAGTG GAAAGGATGCAGATCAGAGTACATGTAGTTTCCCCAACAACTCCACTGAAAGATCTACACAACAAGATCAAGTTTCTGAATCACCTGCACAGGAAAAGAG TTCACTTTCTGAATCATCTGAAAAAATCAGCAAGTGTGAAGATTCCAAACCCTTGCATATCTCACAAGACATTATCCAAACAGAACAATCAAATTTTCCC AAAGCTCCTTTGACACCTCATCAGGATCATTCAATCATGGAAGAGTCAGCTAGTGTAAGAGGAAGTTCTGTACCTAATAATAGGGTTGGAAAGCATCCTG GCTTGTCTTCCAGTGGCATTCATAGTGTGGAATGGATTGGTAATGAAATTAAAGTTGCAGATGGAAAAACTTTTTACAAGTCCTGTTGCATTGATGGAGT ATCGTATAAAGTGCAGGATCATGCCCTTTTTCATTCCAGTGATGGAAAATTAACACCCTCTAAACTTCAGACCATGTGGGAGGAAATTGAAACTGGATCA AAGTGGGTTCTTGTCAGTCAGTGCTACTTTCCTGGTGACTTGCCTGCGGCTGTAGGTCACCCATGTGCCCCTGAAAGTAATGAGGTCTATGAATCAAATC ATGAAAGCAGTGTGATGGCTAGCTTGATTGAAGGCCCATGTGAAGTTCTTCCTCCTAACAAGTTTAAGGAAATGAGTGAAAGACAGAACCGGTTAGCAAT CGAGGCAAATAATGGATCAGCACCTGTTTTCATATGCAAATGGTTTTATGATGAATTGAAAGGGAATTTTCAACCTGTTTTCCATTGA
AA sequence Show only first row Show all	>Potri.001G358900.8 pacid=42789700 polypeptide=Potri.001G358900.8.p locus=Potri.001G358900 ID=Potri.001G358900.8.v4.1 annot-version=v4.1 MDPSAVDDCNKSLPQSDGETDLVSEKRQMENVESEELAAKRAKNGVGEIRKVAEIVLVLSAMAGMRGGKNPTDAEVRLMEEAREKLVEICQDLSPKDLVA RDSIGTVIEDLGLNFKLKDQRLGFRGSRLSIKEKLSLSKRKMEESKKFAAPSATYTTQITQPSFGAMPESHGPSHAFRVLPSDKPSNISVSSGIFPASLP GHVSAATPASSTLQPLTTEAKISAVSSGLPSSQLGRDLSSVAFSKVEKTQFKVEGGSNGASYAPQVPANASANHSLVNAPSWSMQPHSASSGKSAPENNM PNHNSAKVEGVADLGRTRATQAARDQTFRPFTPQTPPANLPSIHPPMQGVEYVQPPSFINNHNEIAKIVQKLLQPKLPEYPTWIPPSREYMTTAMTCQIC KLTVNEVETVVLCDACESGFHIKCREAINQKGIPRGEWHCRNCMALSNGKPLPPKYGRVMRSATPPKGPSNPAGSHSSLEKKAENVDLKVDQQKSTNGVQ NNAGSGSVNNVESASDSRISGEREMPRDGITSSGKDADQSTCSFPNNSTERSTQQDQVSESPAQEKSSLSESSEKISKCEDSKPLHISQDIIQTEQSNFP KAPLTPHQDHSIMEESASVRGSSVPNNRVGKHPGLSSSGIHSVEWIGNEIKVADGKTFYKSCCIDGVSYKVQDHALFHSSDGKLTPSKLQTMWEEIETGS KWVLVSQCYFPGDLPAAVGHPCAPESNEVYESNHESSVMASLIEGPCEVLPPNKFKEMSERQNRLAIEANNGSAPVFICKWFYDELKGNFQPVFH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G50620			RING/FYVE/PHD zinc finger supe...		Potri.001G358900 [exp]	0	1
AT3G09560		ATPAH1	PHOSPHATIDIC ACID PHOSPHOHYDRO...		Potri.006G214800 [exp]	1.73	0.8862
AT1G48110		ECT7	evolutionarily conserved C-ter...		Potri.010G152300 [exp]	2.44	0.8956
AT1G09710	MYB		Homeodomain-like superfamily p...		Potri.002G106500 [exp]	4.12	0.8970
AT1G79090			unknown protein		Potri.011G143900 [exp]	5.47	0.8789
AT4G31770		ATDBR1	ARABIDOPSIS THALIANA DEBRANCHI...		Potri.018G015300 [exp]	7.74	0.8663
AT5G25520			SPOC domain / Transcription el...		Potri.006G246800 [exp]	8.24	0.8858
AT1G74120			Mitochondrial transcription te...		Potri.018G051600 [exp]	10.39	0.8718
AT5G57740		XBAT32	XB3 ortholog 2 in Arabidopsis ...		Potri.006G176600 [exp]	10.77	0.8387
AT1G43850		SEU	SEUSS transcriptional co-regul...		Potri.005G186900 [exp]	11.22	0.8765
AT1G36370		SHM7	serine hydroxymethyltransferas...		Potri.001G212000 [exp]	11.83	0.8509	SHMT9

Compare expression of checked genes

Potri.001G358900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.