Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20440 1353 / 0 EMB2729, BE1 EMBRYO DEFECTIVE 2729, BRANCHING ENZYME 1, Alpha amylase family protein (.1.2.3) AT2G36390 469 / 2e-151 SBE2.1, BE3 BRANCHING ENZYME 3, starch branching enzyme 2.1 (.1) AT5G03650 463 / 7e-150 SBE2.2 starch branching enzyme 2.2 (.1) AT4G09020 69 / 1e-11 ATISA3, ISA3 isoamylase 3 (.1) AT2G39930 67 / 4e-11 ATISA1, ISA1 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) AT1G03310 45 / 0.0002 ATISA2, ISA2, DBE1, BE2 BRANCHING ENZYME 2, ARABIDOPSIS THALIANA ISOAMYLASE 2, debranching enzyme 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G251000 [exp] 463 / 2e-149 AT5G03650 828 / 0.0 starch branching enzyme 2.2 (.1) Potri.006G115100 [exp] 458 / 1e-147 AT5G03650 1303 / 0.0 starch branching enzyme 2.2 (.1) Potri.006G070800 [exp] 73 / 9e-13 AT2G39930 1212 / 0.0 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) Potri.018G132500 [exp] 69 / 1e-11 AT2G39930 1217 / 0.0 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) Potri.002G100900 [exp] 65 / 2e-10 AT4G09020 1111 / 0.0 isoamylase 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000912 [exp] 1348 / 0 AT3G20440 1315 / 0.0 EMBRYO DEFECTIVE 2729, BRANCHING ENZYME 1, Alpha amylase family protein (.1.2.3) Lus10003675 [exp] 784 / 0 AT3G20440 766 / 0.0 EMBRYO DEFECTIVE 2729, BRANCHING ENZYME 1, Alpha amylase family protein (.1.2.3) Lus10003674 [exp] 500 / 1e-170 AT3G20440 477 / 7e-163 EMBRYO DEFECTIVE 2729, BRANCHING ENZYME 1, Alpha amylase family protein (.1.2.3) Lus10014382 [exp] 463 / 1e-148 AT2G36390 1253 / 0.0 BRANCHING ENZYME 3, starch branching enzyme 2.1 (.1) Lus10023878 [exp] 462 / 9e-146 AT2G36390 1253 / 0.0 BRANCHING ENZYME 3, starch branching enzyme 2.1 (.1) Lus10016012 [exp] 447 / 9e-144 AT2G36390 818 / 0.0 BRANCHING ENZYME 3, starch branching enzyme 2.1 (.1) Lus10012264 [exp] 444 / 4e-142 AT2G36390 818 / 0.0 BRANCHING ENZYME 3, starch branching enzyme 2.1 (.1) Lus10027725 [exp] 249 / 2e-68 AT1G66950 1077 / 0.0 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) Lus10017150 [exp] 68 / 3e-11 AT2G39930 723 / 0.0 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) Lus10021586 [exp] 67 / 5e-11 AT2G39930 1211 / 0.0 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00128 [poplar] [flax] Alpha-amylase Alpha amylase, catalytic domain CL0369 [poplar] [flax] GHD PF02806 [poplar] [flax] Alpha-amylase_C Alpha amylase, C-terminal all-beta domain CL0369 [poplar] [flax] GHD PF02922 [poplar] [flax] CBM_48 Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
Representative CDS sequence Show only first row Show all	>Potri.001G359200.3 pacid=42787546 polypeptide=Potri.001G359200.3.p locus=Potri.001G359200 ID=Potri.001G359200.3.v4.1 annot-version=v4.1 ATGTTGGTGACTTGTTCAACACTAAACACTTTCTCAGCCTCAATCTCAGTGTCCTCAACCAGATTCTGTCAATGTCAATCTCTCTATCCTAACAATTTCT TTCTCCAAAACAAACCTCATACCACACTAAATTTCTCCCACAAAGTCCGAATAATAAAATGCACAGCCTCAGCAAACCAAAAAGAACAGCAACAGCAAGA CTTGAATAATAACGGTAGTAAGAAGAAGAAGAAGAAAAAGAAAGGTGATGATGAAACAGAAAAAGACGAAGAGAAAAAAGGGATAAACCCAGTTGGGTTT CTCACCAGACTTGGCATTTCTCACAAACAGTTAGCTTACTTTCTCAGGGAAAGGTATAAATCATTGAAGGACCTCAAAGATGAACTTTTCAAACGAAACC TTATGCTGAAGGACATTGCTTATGGATTTGAGCTTATGGGTTCGCATCGTCACCCAGAGCATCGGATGGATTTTATGGAATGGGCTCCAGGTGCTCGCTA CTGTTCATTAATTGGTGACTTTAATGGGTGGTCACCCACGGAAAACTCTGCTAGAGAAGGTCATTTTGGTCATGATGATTATGGCTACTGGTTTATTATT CTTGAAGATAAACTCAAGGATGGAGTACAACCTGAACAACTTTATTTTCAGCAGTATAATTATGTGGATGACTACGATAAAGGTGACAGTGGCGATGCTA GTATTGAAGAAATCTTCAAGAAAGCAAATGATGACTACTGGGAACCTGGAGAAGATACTTTTGTAAATAGACGTTTTGAAGTGCCGGCAAAGTTATATGA GCAATTATTTGGTCCTAATGGCCCTCAAACACAAGAAGAACTGGAAGAAATACCTTTCCCAGATGCAGAAACGAGATACAATGAATGGAAACAACCACAT AAAAATGATCCACCAAGTAACTTACCTCCTTGTACGGTGATTGATGAAGGAAAAGAATATGATATATATAATATCAAGAGTGACCCTGTATGGCTTGAGA AAATTCGTGCTAAGAAGCCTCCTCTGCCATATTGGTTTGAGACACGTAAAGGAAGGCAAGCATGGTTGAAAAAGTACACCCCAGCTATTCCTCATGGAAG CAAATACAGGGTCTATTTTAACACTCCTAGTGGACCACTGGAACGTGTGCCTGCTTGGGCTACTTATGTGCAACCAGATACAAACGGGAACGAAGCTTTT GCCATCCATTGGGAACCACCCCCAGAGCATGCTTACAAATGGAAAAACAAACACCCAAAAGTGCCGAAGTCCTTGCGTATATATGAGTGCCATGTTGGTA TTAGTGGCTCAGAGCCAAAAATATCTTCTTTCACTGACTTCACAGAGAAGGTCCTTCCTCATGTAAAGGGAGCTGGATATAATGCAATCCAGTTGATTGG AATTGTTGAACACAAAGATTATTTCACTGTTGGCTATCGGGTCACCAATTTGTATGCGGTTAGTAGCCGATATGGCACTCCTGATGATTTCAAACGCTTG GTTGATGAAGCACACGGATTGGGACTGCTGGTGTTCTTAGATATTGTGCATTCCTACTCAGCTGCAGATGAGATGGTTGGACTATCACTGTTTGATGGAT CAAATGATTGCTACTTTCACACTGGTAAAAGAGGCCATCACAAATATTGGGGTACTAGAATGTTCAAATATGGCGACCAAGAAGTATTACAGTATCTACT CTCAAATCTGAATTGGTGGGTTGAGGAGTATCACATAGATGGTTTCCAGTTTCATTCACTCTCATCAATGATGTACACACACAATGGTTTTGCTTCTTTT ACTGGCAACCTGGAAGATTACTGCAATCAACATGTTGACAAGGATGCATTCTTGTATCTCATTTTGGCAAATGAGCTATTGCATACTCTTCATCCTGATA TCATAACAATTGCTGAAGATGCAACATTTTATCCTGGACTTTGTGAGCCTACTTCACAAGGGGGGTTGGGATTTGATTATTATGTCAACCTTTCTGCACC AGAGATGTGGACGTCTTTTCTAAAGAATATTCCAGATCATGAATGGAGCATGAGCAAGATAGTCAGTGCTTTAATGGGCAACAGACAATATGCTGATAAG ATGCTTATATATGCTGAAAATCACAATCAATGTATCTCTGGAGGGCAGTCATTTGCTGAGATATTGTTTGGTGAAATCAACGAGCACACTCCTGGCTCGA CAGAATCTTTGCTTAGAGGATGTTCACTACACAAAATGATCAGAATGATTACCTTCACAATTGGTGGGCGTGCTTACCTCAATTTCATGGGCAATGAATT TGGGCATCCCAAGAGGGTTGAGTTCCCAATGCCAAGCAACAACTTCTCATATTCGCTTGCTCATCGTAGTTGGTATCTTCTGTCAAATGAAGTGCATCAC AATTTATTTTCCTTTGATAAGGACCTTATGAATTTGGATGAAAATAACAGATTGCTTTCAAGGGGTTTACCACACATTCACCATGTGAATGACACTACCA TGGTAATATCATACATAAGAGGACCTCTCCTCTTTGTATTCAACTTTCATCCAACTGAAGCATATGAAAGATATAGTGTAGGTGTGGAAGAAGCTGGAGA GTATCAAATCATACTAAATACTGATGAAAAGAAGTATGGAGGCCAGGGACTTGTAGATGCTCAGCAACATCTTCAAAGAACAATCAGCAGAAAAGCTGAT GGCCTCCAAAATTGCTTAGAACTGCCTCTGCCTAGTAGGACTGCTCAGGTTTACAAATTAACTCGCATATTACGAATTTGA
AA sequence Show only first row Show all	>Potri.001G359200.3 pacid=42787546 polypeptide=Potri.001G359200.3.p locus=Potri.001G359200 ID=Potri.001G359200.3.v4.1 annot-version=v4.1 MLVTCSTLNTFSASISVSSTRFCQCQSLYPNNFFLQNKPHTTLNFSHKVRIIKCTASANQKEQQQQDLNNNGSKKKKKKKKGDDETEKDEEKKGINPVGF LTRLGISHKQLAYFLRERYKSLKDLKDELFKRNLMLKDIAYGFELMGSHRHPEHRMDFMEWAPGARYCSLIGDFNGWSPTENSAREGHFGHDDYGYWFII LEDKLKDGVQPEQLYFQQYNYVDDYDKGDSGDASIEEIFKKANDDYWEPGEDTFVNRRFEVPAKLYEQLFGPNGPQTQEELEEIPFPDAETRYNEWKQPH KNDPPSNLPPCTVIDEGKEYDIYNIKSDPVWLEKIRAKKPPLPYWFETRKGRQAWLKKYTPAIPHGSKYRVYFNTPSGPLERVPAWATYVQPDTNGNEAF AIHWEPPPEHAYKWKNKHPKVPKSLRIYECHVGISGSEPKISSFTDFTEKVLPHVKGAGYNAIQLIGIVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRL VDEAHGLGLLVFLDIVHSYSAADEMVGLSLFDGSNDCYFHTGKRGHHKYWGTRMFKYGDQEVLQYLLSNLNWWVEEYHIDGFQFHSLSSMMYTHNGFASF TGNLEDYCNQHVDKDAFLYLILANELLHTLHPDIITIAEDATFYPGLCEPTSQGGLGFDYYVNLSAPEMWTSFLKNIPDHEWSMSKIVSALMGNRQYADK MLIYAENHNQCISGGQSFAEILFGEINEHTPGSTESLLRGCSLHKMIRMITFTIGGRAYLNFMGNEFGHPKRVEFPMPSNNFSYSLAHRSWYLLSNEVHH NLFSFDKDLMNLDENNRLLSRGLPHIHHVNDTTMVISYIRGPLLFVFNFHPTEAYERYSVGVEEAGEYQIILNTDEKKYGGQGLVDAQQHLQRTISRKAD GLQNCLELPLPSRTAQVYKLTRILRI

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G20440		EMB2729, BE1	EMBRYO DEFECTIVE 2729, BRANCHI...		Potri.001G359200 [exp]	0	1
AT4G12750			Homeodomain-like transcription...		Potri.014G173300 [exp]	2.44	0.9315
AT2G38770		EMB2765	EMBRYO DEFECTIVE 2765, P-loop ...		Potri.003G201200 [exp]	3.16	0.9319
AT5G46460			Pentatricopeptide repeat (PPR)...		Potri.001G354400 [exp]	3.46	0.9261
AT3G61780		EMB1703	embryo defective 1703 (.1)		Potri.014G099100 [exp]	3.46	0.9166
AT4G32420			Cyclophilin-like peptidyl-prol...		Potri.006G250900 [exp]	4.47	0.9203
AT4G03030			Galactose oxidase/kelch repeat...		Potri.005G221300 [exp]	5.19	0.9120
AT4G39952			Pentatricopeptide repeat (PPR)...		Potri.005G074000 [exp]	7.48	0.8845
AT1G74350			Intron maturase, type II famil...		Potri.005G063750 [exp]	7.48	0.9165
AT1G56690			Pentatricopeptide repeat (PPR)...		Potri.013G005400 [exp]	8.48	0.9082
AT2G24120		PDE319, SCA3	SCABRA 3, PIGMENT DEFECTIVE 31...		Potri.006G181100 [exp]	8.48	0.9012

Compare expression of checked genes

Potri.001G359200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.