Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04950 527 / 0 EMB2781, ATTAF6, TAF6, TAFII59 TBP-associated factor 6, EMBRYO DEFECTIVE 2781, TATA BOX ASSOCIATED FACTOR II 59 (.1.2.3) AT1G54360 518 / 1e-180 TAF6b4, TAF6b3, TAF6b2, TAF6b1 TBP-associated factor 6B4, TBP-ASSOCIATED FACTOR 6B2, TBP-ASSOCIATED FACTOR 6B1, TBP-ASSOCIATED FACTOR 6B (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G161100 [exp] 597 / 0 AT1G04950 639 / 0.0 TBP-associated factor 6, EMBRYO DEFECTIVE 2781, TATA BOX ASSOCIATED FACTOR II 59 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016578 [exp] 653 / 0 AT1G04950 617 / 0.0 TBP-associated factor 6, EMBRYO DEFECTIVE 2781, TATA BOX ASSOCIATED FACTOR II 59 (.1.2.3) Lus10002443 [exp] 648 / 0 AT1G04950 603 / 0.0 TBP-associated factor 6, EMBRYO DEFECTIVE 2781, TATA BOX ASSOCIATED FACTOR II 59 (.1.2.3) Lus10014628 [exp] 560 / 0 AT1G04950 677 / 0.0 TBP-associated factor 6, EMBRYO DEFECTIVE 2781, TATA BOX ASSOCIATED FACTOR II 59 (.1.2.3) Lus10033805 [exp] 554 / 0 AT1G04950 686 / 0.0 TBP-associated factor 6, EMBRYO DEFECTIVE 2781, TATA BOX ASSOCIATED FACTOR II 59 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [poplar] [flax] Histone PF02969 [poplar] [flax] TAF TATA box binding protein associated factor (TAF) CL0020 [poplar] [flax] TPR PF07571 [poplar] [flax] TAF6_C TAF6 C-terminal HEAT repeat domain
Representative CDS sequence Show only first row Show all	>Potri.001G359400.1 pacid=42788917 polypeptide=Potri.001G359400.1.p locus=Potri.001G359400 ID=Potri.001G359400.1.v4.1 annot-version=v4.1 ATGAGCAGCAGCATAGTAGCAAAGGAAGCAATAGAGGTGATAGCACAGGGCATCGGAATCACGAATCTGTCCCCTGATGTTTCCCTCACTCTGGCTCCCG ACGTGGAGTACCGTCTCCGGGAGATCATCCAGGAGGCAATTAAATGCATGCGTCACTCAAGGAGAACTGCCTTGACTGCTCATGATGTTGACACTGCTCT CATCTTAAGAAATGTCGAGCCAATTTATGGTTTTGGTTCTGGAGGAGATAAAGTTCCATTGCGGTTCAAAAGAGCTGCTGCTGCTGGACATAAGGATCTA TATTATATCGATGACAAAGACGTCAATTTTAAACACGTTATTGAAGCCCCTCCGCCAAAACCCCCGCTTGATACTTCTCTTACCTCACATTGGTTAGCTA TTGAAGGTGTTCAGCCTGCAATTCCCGAGAATGTTCCGATTGAAGCACTTGGAGTAATCTCTGATGGCAAAAAATCTGACTACAAGGATGATGGTCTTTC GATCGATGTCAAACTACCTGTCAAGGACATATTGTCAAGAGAGCTTCAGCTTTACTTTGAAAAGGTCACAGAGCTTACTGCGAGGAGGTCTGAATCTGCT ATCTTCAAACAAGCATTAGTGAGTTTGGCCACAGACTCAGGACTGCACCCTTTAGTTCCTTATTTCATACAATTCATTGCTGACGAGGTTTCAAGGAATC TGAATAATTTTTCTCTTCTCCTTGCTGTGATGCGCATTGCCCGAAGCCTTCTTCAAAACCCATACATTCATATTGAACCTTATCTACACCAATTAATGCC ATCTATTATTACCTGCCTAGTTGCAAAAAGATTAGGTAACAGATTTTCTGACAACCATTGGGAACTCAGAAACTTCACAGCGAACCTGGTTGCTTCGATA TGCAAAAGATTTGGGCATGCTTATCACAATCTGCAGCCTCGCATCATAAGGACTCTAGTCCATGCGTTCTTGGACCCAACAAAATCATTGCCACAACATT ATGGTTCAATACAAGGATTAGCAGCTCTAGGACCCAGTGTGGTTCGTCTTCTTATACTACCAAATCTAGAGCCGTATTTACTCCTCCTTGAACAAGAAAT GCTGCTTGAGAAGCAAAAAAATGAGATAAAGAGACATGAAGCTTGGCAGGTTTATGGAGCTTTGACGCGTGCAGCTGGTCTCTGTATGTATGATCGGCTC AAAATGTTACCTGGTTTGTTTATTCCACCAAGTCGTGCTATCTGGAAGAGCAATGGAAGAGTTATGACTGCAATGCCAAATAAACGCAAAGCTAGCACAG ATAACTTAATGCAGCAACCACTGCTTAAGAAAATAGCAACAGATAGTGCAATTGGTGCAATGCCAATGAACTCCATGCCAGTTGAGATGCAAGGGGCAGC AAGTGGATTTCCTACAGCTGTTGGAGCTTCCAGTGTGTCAGTATCAGCAATATCTCGGCAGTTATCCAATGAAAACGTGCCACGAAGAGAGATTAGTGGA AGGGGGTTAAAAACGTCAACTGTTCTCGCACAGGCTTGGAAGGAGGACATGGATGCAGGCCATTTATTAGCGTCACTATTTGAACTTTTCAGTGAAAGCA TGTTCTCCTTTACTCCCAAACCTGAGTTGTCTTTTTTCTTGTGA
AA sequence Show only first row Show all	>Potri.001G359400.1 pacid=42788917 polypeptide=Potri.001G359400.1.p locus=Potri.001G359400 ID=Potri.001G359400.1.v4.1 annot-version=v4.1 MSSSIVAKEAIEVIAQGIGITNLSPDVSLTLAPDVEYRLREIIQEAIKCMRHSRRTALTAHDVDTALILRNVEPIYGFGSGGDKVPLRFKRAAAAGHKDL YYIDDKDVNFKHVIEAPPPKPPLDTSLTSHWLAIEGVQPAIPENVPIEALGVISDGKKSDYKDDGLSIDVKLPVKDILSRELQLYFEKVTELTARRSESA IFKQALVSLATDSGLHPLVPYFIQFIADEVSRNLNNFSLLLAVMRIARSLLQNPYIHIEPYLHQLMPSIITCLVAKRLGNRFSDNHWELRNFTANLVASI CKRFGHAYHNLQPRIIRTLVHAFLDPTKSLPQHYGSIQGLAALGPSVVRLLILPNLEPYLLLLEQEMLLEKQKNEIKRHEAWQVYGALTRAAGLCMYDRL KMLPGLFIPPSRAIWKSNGRVMTAMPNKRKASTDNLMQQPLLKKIATDSAIGAMPMNSMPVEMQGAASGFPTAVGASSVSVSAISRQLSNENVPRREISG RGLKTSTVLAQAWKEDMDAGHLLASLFELFSESMFSFTPKPELSFFL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G04950		EMB2781, ATTAF6...	TBP-associated factor 6, EMBRY...		Potri.001G359400 [exp]	0	1
AT5G30495			Fcf2 pre-rRNA processing prote...		Potri.010G002100 [exp]	1.73	0.9001
AT4G11980		ATNUDX14, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.003G118300 [exp]	2.82	0.8896
AT5G47760		ATPK5, ATPGLP2	2-phosphoglycolate phosphatase...		Potri.016G004200 [exp]	3.16	0.8675
AT5G64160			unknown protein		Potri.001G206032 [exp]	4.58	0.8780
AT3G18140			Transducin/WD40 repeat-like su...		Potri.016G052800 [exp]	5.91	0.8656
AT5G10620			methyltransferases (.1)		Potri.006G278500 [exp]	6.92	0.8666
AT2G27490		ATCOAE	dephospho-CoA kinase family (....		Potri.008G053601 [exp]	10.19	0.8634
					Potri.013G126650 [exp]	11.22	0.8631
AT3G26090		ATRGS1, RGS1	REGULATOR OF G-PROTEIN SIGNALI...		Potri.008G181500 [exp]	11.48	0.8176
AT3G14930		HEME1	Uroporphyrinogen decarboxylase...		Potri.011G109800 [exp]	13.26	0.8344

Compare expression of checked genes

Potri.001G359400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.