Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-FTSZ.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55280 546 / 0 ATFTSZ1-1, CPFTSZ, FTSZ1-1 CHLOROPLAST FTSZ, ARABIDOPSIS THALIANA HOMOLOG OF BACTERIAL CYTOKINESIS Z-RING PROTEIN FTSZ 1-1, homolog of bacterial cytokinesis Z-ring protein FTSZ 1-1 (.1) AT3G52750 301 / 2e-98 FTSZ2-2 Tubulin/FtsZ family protein (.1) AT2G36250 296 / 4e-96 ATFTSZ2-1, FTSZ2-1 Tubulin/FtsZ family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G083100 [exp] 295 / 8e-96 AT3G52750 647 / 0.0 Tubulin/FtsZ family protein (.1) Potri.004G203100 [exp] 292 / 1e-94 AT2G36250 613 / 0.0 Tubulin/FtsZ family protein (.1.2) Potri.009G164100 [exp] 277 / 7e-89 AT2G36250 524 / 0.0 Tubulin/FtsZ family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016579 [exp] 488 / 2e-172 AT5G55280 535 / 0.0 CHLOROPLAST FTSZ, ARABIDOPSIS THALIANA HOMOLOG OF BACTERIAL CYTOKINESIS Z-RING PROTEIN FTSZ 1-1, homolog of bacterial cytokinesis Z-ring protein FTSZ 1-1 (.1) Lus10002442 [exp] 427 / 1e-148 AT5G55280 479 / 6e-169 CHLOROPLAST FTSZ, ARABIDOPSIS THALIANA HOMOLOG OF BACTERIAL CYTOKINESIS Z-RING PROTEIN FTSZ 1-1, homolog of bacterial cytokinesis Z-ring protein FTSZ 1-1 (.1) Lus10017047 [exp] 298 / 1e-96 AT2G36250 597 / 0.0 Tubulin/FtsZ family protein (.1.2) Lus10021367 [exp] 298 / 1e-96 AT3G52750 607 / 0.0 Tubulin/FtsZ family protein (.1) Lus10014196 [exp] 297 / 1e-96 AT3G52750 569 / 0.0 Tubulin/FtsZ family protein (.1) Lus10022718 [exp] 230 / 1e-72 AT3G52750 381 / 3e-131 Tubulin/FtsZ family protein (.1) Lus10035091 [exp] 59 / 3e-09 AT1G75010 559 / 0.0 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3, GTP binding (.1) Lus10031930 [exp] 56 / 5e-08 AT1G75010 549 / 0.0 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3, GTP binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0566 [poplar] [flax] Tubulin PF00091 [poplar] [flax] Tubulin Tubulin/FtsZ family, GTPase domain CL0442 [poplar] [flax] Tubulin_C PF12327 [poplar] [flax] FtsZ_C FtsZ family, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.001G359500.1 pacid=42791639 polypeptide=Potri.001G359500.1.p locus=Potri.001G359500 ID=Potri.001G359500.1.v4.1 annot-version=v4.1 ATGGCAACACTTCAACTTCAACTAGCAAACCCCAACACATCGTCTCCTTCATTTTCAACATCATTTCAGAAACAACTATGCCGTTTCTCTCAGAGAAGGA GACTGTCATCATCGAAACATGGCAGTGTAAGCTGTTCCTTTGCCCCCATGGAGTCTGCCAAGATAAAGGTTGTTGGTGTTGGTGGCGGTGGCAACAATGC CGTTAATCGCATGATAGGCAGCGATTTGCAGGGTATCGATTTCTATGCCATAAACACGGATGCTCAAGCACTTGTACAGTCTGCTGCACAGAACCCACTT CAAATTGGAGAGCTTTTGACCCGCGGACTAGGTACTGGGGGGAATCCGCTTTTGGGAGAACAAGCAGCAGAGGAATCAAAAGATGCCATAGCAAATGCGC TAAAGGGATCAGACCTTGTCTTTATAACAGCTGGTATGGGTGGAGGTACGGGATCCGGTGCTGCCCCAGTTGTAGCTCAGATATCAAAGGAGGCAGGATA TTTGACTGTTGGTGTGGTTACGTATCCTTTCAGCTTCGAGGGGCGAAAAAGATCCTTGCAGGCATTAGAGGCTATTGAAAAATTGCAAAAAAATGTGGAT ACTCTAATAGTGATCCCCAATGACCGCCTGCTTGATATTGCTGATGAGCAGACACCCCTCCAGGATGCTTTCCTCCTGGCTGATGATGTTTTACGGCAAG GAGTGCAAGGAATTTCAGATATTATTACTATACCTGGACTGGTTAATGTGGATTTTGCAGATGTTAAGGCAGTGATGAAAAATTCAGGTACTGCAATGCT TGGAATTGGAGTTTCCTCCAGCAAAAATCGTGCTGAAGAAGCAGCTGAACAAGCAACTCTGGCGCCCCTGATTGGTTCATCAATCCAGTCAGCTACTGGA GTGGTATACAATATTACTGGAGGAAAGGACATAACATTACAGGAAGTGAATAGAGTGTCACAGGTTGTGACCAGTTTGGCTGATCCATCTGCAAACATAA TATTTGGGGCTGTTGTTGATGATCGTTATAATGGGGAGATTCATGTGACTATTATTGCTACTGGCTTCTCACAGTCATTTCAGAAGTCACTTCTAACAGA CCCGAAGGCTGCAAAACTGGTAGACAGAATGTCAGGGAGTCAAGAAGCCAAGGGAATTCCAGTTCCTCTCAAGTCCTCGACCTCATCTTCCACTGTTCCA ACCAGACCATCTCCCAGAAAGCTCTTCTTTTGA
AA sequence Show only first row Show all	>Potri.001G359500.1 pacid=42791639 polypeptide=Potri.001G359500.1.p locus=Potri.001G359500 ID=Potri.001G359500.1.v4.1 annot-version=v4.1 MATLQLQLANPNTSSPSFSTSFQKQLCRFSQRRRLSSSKHGSVSCSFAPMESAKIKVVGVGGGGNNAVNRMIGSDLQGIDFYAINTDAQALVQSAAQNPL QIGELLTRGLGTGGNPLLGEQAAEESKDAIANALKGSDLVFITAGMGGGTGSGAAPVVAQISKEAGYLTVGVVTYPFSFEGRKRSLQALEAIEKLQKNVD TLIVIPNDRLLDIADEQTPLQDAFLLADDVLRQGVQGISDIITIPGLVNVDFADVKAVMKNSGTAMLGIGVSSSKNRAEEAAEQATLAPLIGSSIQSATG VVYNITGGKDITLQEVNRVSQVVTSLADPSANIIFGAVVDDRYNGEIHVTIIATGFSQSFQKSLLTDPKAAKLVDRMSGSQEAKGIPVPLKSSTSSSTVP TRPSPRKLFF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G55280		ATFTSZ1-1, CPFT...	CHLOROPLAST FTSZ, ARABIDOPSIS ...		Potri.001G359500 [exp]	0	1	Pt-FTSZ.1
AT3G18680			Amino acid kinase family prote...		Potri.005G057700 [exp]	4.89	0.9559
AT2G30320			Pseudouridine synthase family ...		Potri.013G154200 [exp]	6.00	0.9338
AT2G42920			Pentatricopeptide repeat (PPR-...		Potri.005G202600 [exp]	6.00	0.9456
AT4G09730		RH39	RH39 (.1)		Potri.005G198300 [exp]	10.58	0.9260
AT1G69523			S-adenosyl-L-methionine-depend...		Potri.008G088500 [exp]	10.95	0.9350
AT1G06950		ATTIC110, TIC11...	ARABIDOPSIS THALIANA TRANSLOCO...		Potri.019G127000 [exp]	10.95	0.9329
AT3G52050			5'-3' exonuclease family prote...		Potri.013G125700 [exp]	11.48	0.9447
AT4G32520		AtSHMT3, SHM3	serine hydroxymethyltransferas...		Potri.006G232300 [exp]	11.66	0.9126
					Potri.014G179200 [exp]	12.64	0.9249
AT3G25660			Amidase family protein (.1)		Potri.018G086350 [exp]	14.42	0.9309

Compare expression of checked genes

Potri.001G359500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.