Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	TOP1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55310 933 / 0 TOP1alpha, TOP1BETA DNA topoisomerase 1 beta (.1) AT5G55300 917 / 0 MGO1, TOP1BETA, TOP1ALPHA TOPOISOMERASE 1, MGOUN 1, DNA topoisomerase I alpha (.1.2.3) AT4G26701 124 / 8e-34 DNA binding;DNA topoisomerase type Is (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G092700 [exp] 1280 / 0 AT5G55310 912 / 0.0 DNA topoisomerase 1 beta (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032571 [exp] 1078 / 0 AT5G55310 971 / 0.0 DNA topoisomerase 1 beta (.1) Lus10043175 [exp] 1072 / 0 AT5G55300 971 / 0.0 TOPOISOMERASE 1, MGOUN 1, DNA topoisomerase I alpha (.1.2.3) Lus10043172 [exp] 946 / 0 AT5G55310 880 / 0.0 DNA topoisomerase 1 beta (.1) Lus10032572 [exp] 632 / 0 AT5G55310 580 / 0.0 DNA topoisomerase 1 beta (.1) Lus10032573 [exp] 274 / 2e-83 AT5G55300 213 / 3e-61 TOPOISOMERASE 1, MGOUN 1, DNA topoisomerase I alpha (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0382 [poplar] [flax] DNA-mend PF01028 [poplar] [flax] Topoisom_I Eukaryotic DNA topoisomerase I, catalytic core CL0382 [poplar] [flax] PF02919 [poplar] [flax] Topoisom_I_N Eukaryotic DNA topoisomerase I, DNA binding fragment CL0382 [poplar] [flax] PF14370 [poplar] [flax] Topo_C_assoc C-terminal topoisomerase domain
Representative CDS sequence Show only first row Show all	>Potri.001G359700.1 pacid=42788420 polypeptide=Potri.001G359700.1.p locus=Potri.001G359700 ID=Potri.001G359700.1.v4.1 annot-version=v4.1 ATGGATGTTCAAGCACCTCCAAAGCTAATTCCCAATAATTTCAACGATGATGATGATGATGATGATGGGCCCATAGTTTTCAAGAGGGGTGGTAACTCAA CATCGAAGCAGAATCAATTAAACCCTGAAGCGAAGAAACCGTCTTCATCTTCTCAGAATTCCAATGGTCAAAGCTTGAATTTGCAGAAGGGTAAATCGCC TATTCCATCTTCCAATGCATCCCCTATGAAATCTTCTACAGGGAGCCCTAAAGCATCAGCTTCATCTGCCAAGGCATCCCCGTTGAAGTCACCACTGACA TATACTAGAGCACTCACTTCTTCAAATGATCAGTTGAAGCAGGCATCTAAACAGGTTGTCTCAAATGCTGTTAAGGAGGAGACGAAATCGATTGTGGATG ATGAGGATTCCGAGGATGATAAGCCCTTGAGTTCTAGAATTAAGGGGAGTACAAACAATGTCAATAAAGTGGTTACTGCACCTGCTCATGTCAAGGATGA GCCTTCAGATGATGATGAAGTTCCTTTATCCTCGAGGTTTGCAATGAAGTCAAATGCAGGGACATCAAGTAGTAAGTCTATCAGATCTAGTGAGATAAGA CCTTTTCCTTCTAAAAGTCAGCTAAATGGTTCTACTAAAAATGACAAGCAACAGAAATCTTCTGTGGTGCCAACTAAGAGACCTATGGATAATAAGGTTC CTTCAAACCATTCTTCTGCTAAAAAACCAAAACTTTTAGATGCATGTACAACAACAAAAGTTAAGCAAGTTACTGTCAAGGTTGAGCAGAAGGCAGATGA TGATGACCACCTTACAATTTCCCAGAGAATGAAGAAGGCGGACTCCTCAGCTAACAAATCATCATTTGCAAAGAAAAAGGTTACAAAAGTTGTTTCTTCG TCATTGAAGAAGACGACTCAGAAGAACAAGAAACAAATGAAAAATTCAAAATATTCAAAGTCAACAAAAGTGCAGCCTGGCTCCAGTGATGGCCAGAAAA AATGGACTACCTTAGTTCACAATGGTGTCATCTTCCCACCTCCATACAAGCCTCATGGGGTTAAGATTCTTTACAAGGGGAAACCAATTGATTTGACTCC TGAACAAGAGGAAGTTGCAACCATGTTTGCAGTGATGAAAGATACAGACTATGTTCAAAAACCACAATTCCGTCAAAACTTTTGGAACGATTGGCGTAAA TTACTAGGGAAAAATCATGTAATACAGAAGCTAGATGACTGTGATTTCAACCCCATATATGAATGGCATCAGCAAGAAAAGGAGAAGAAGAAACAAATGA GTACTGAAGAGAAAAAGGTCTTGAAAGAAGAGAAATTGAAGCAAGAGGAGAAGTACATGTGGGCCATTGTTAATGGTGTTAAAGAGAAGGTTGGGAATTT CAGAGTAGAACCACCGGGTCTATTTCGAGGACGGGGAGAGCATCCAAAGATGGGGAAGCTGAAAAGCCGAATTCGTCCCAGTGACATTACTATAAATATT GGAAAGGATGCACCTATCCCGGAATGTCCTATTCCTGGTGAAAGGTGGAAAGAAGTGAAGCATGATAATACTGTTACATGGTTGGCGTTCTGGAATGATC CAATCAATCCAAAAGAATTCAAGTATGTATTCTTAGCTGCGAGCAGTTCCTTGAAGGGGCAAAGTGACAAGGAGAAATACGAGAAAGCAAGGAAGTTGAA GGACTATATACACAACATCAGAGCAGCTTACACAAAGGATTTTGCAAGTAAAGATATTACGAAGCGGCAAATAGCAGTGGCAACCTATCTTATTGATAAG CTAGCTCTGAGGGCGGGTAATGAGAAGGATGATGATGAAGCTGATACTGTTGGTTGCTGCACATTAAAAGTAGCAAATGTTGAGTGCATCCCTCCAAATA AGCTGAAGTTTGACTTCCTTGGTAAAGATTCAATTCGATATGAAAACACGGTCGAGGTTGAGCTTCCTGTGTACAAGGCAATTGGACATTTTCAAGTTGC AAAAAAGCAAACTGATGATCTTTTTGACTCACTGGATACATCTAAACTAAATGCTCACCTAAAAGAACTCATGCCTGGCCTCACAGCAAAAGTTTTTCGT ACATACAATGCATCAATTACATTGGATGAAAAGTTATATGAGGAAACAGAAGATGGTGATGTTGCTGAAAAAATTGTCATTTACAACCAAGCAAACAAAC AGGTTGCAATCATTTGTAATCATCAACGAACCATTTCAAAATCTCATGATGCACAAATGTCAAGATTGACTGAGAAAATTGAGGAACTTAAGAGCACGCT TAAGGAGTTGAAAACTGATCTGGACAGGGCCAAAAAGGGGAAGCCCCCATTGAAGGGTGCAGATGGAAAGCAAAAGAGGAGCTTGACTCCTGAAGCAATA GAGAAGAAGATAGCAACAACCAATCAAAAGATTGAGAAAATGGAAATGGCCATGAAGACCAAAGAGGATCTGAAAACAGTGGCATTGGGGACGTCCAAGA TTAACTACCTTGATCCTAGGATCACAGTTGCGTGGTGCAAGCGGCATGAAGTTCCTATTGATAAGATATTCAACAAGTCTCTCTTAGCAAAGTTTACCTG GGCGATGGACGTTGACCCCCAATTCAGATTCTGA
AA sequence Show only first row Show all	>Potri.001G359700.1 pacid=42788420 polypeptide=Potri.001G359700.1.p locus=Potri.001G359700 ID=Potri.001G359700.1.v4.1 annot-version=v4.1 MDVQAPPKLIPNNFNDDDDDDDGPIVFKRGGNSTSKQNQLNPEAKKPSSSSQNSNGQSLNLQKGKSPIPSSNASPMKSSTGSPKASASSAKASPLKSPLT YTRALTSSNDQLKQASKQVVSNAVKEETKSIVDDEDSEDDKPLSSRIKGSTNNVNKVVTAPAHVKDEPSDDDEVPLSSRFAMKSNAGTSSSKSIRSSEIR PFPSKSQLNGSTKNDKQQKSSVVPTKRPMDNKVPSNHSSAKKPKLLDACTTTKVKQVTVKVEQKADDDDHLTISQRMKKADSSANKSSFAKKKVTKVVSS SLKKTTQKNKKQMKNSKYSKSTKVQPGSSDGQKKWTTLVHNGVIFPPPYKPHGVKILYKGKPIDLTPEQEEVATMFAVMKDTDYVQKPQFRQNFWNDWRK LLGKNHVIQKLDDCDFNPIYEWHQQEKEKKKQMSTEEKKVLKEEKLKQEEKYMWAIVNGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKSRIRPSDITINI GKDAPIPECPIPGERWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARKLKDYIHNIRAAYTKDFASKDITKRQIAVATYLIDK LALRAGNEKDDDEADTVGCCTLKVANVECIPPNKLKFDFLGKDSIRYENTVEVELPVYKAIGHFQVAKKQTDDLFDSLDTSKLNAHLKELMPGLTAKVFR TYNASITLDEKLYEETEDGDVAEKIVIYNQANKQVAIICNHQRTISKSHDAQMSRLTEKIEELKSTLKELKTDLDRAKKGKPPLKGADGKQKRSLTPEAI EKKIATTNQKIEKMEMAMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIDKIFNKSLLAKFTWAMDVDPQFRF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G55310		TOP1alpha, TOP1...	DNA topoisomerase 1 beta (.1)		Potri.001G359700 [exp]	0	1	TOP1.1
AT3G57300		ATINO80	INO80 ortholog (.1.2)		Potri.006G047100 [exp]	2.23	0.9087
AT3G54610		ATGCN5, HAG1, H...	HISTONE ACETYLTRANSFERASE 1, g...		Potri.002G045900 [exp]	5.83	0.7992	HAG906,HAT1.6
AT5G06350			ARM repeat superfamily protein...		Potri.001G208900 [exp]	6.48	0.8505
AT2G46020		CHA2, ATBRM, CH...	CHROMATIN REMODELING 2, ARABID...		Potri.002G160900 [exp]	7.07	0.8687
AT1G72390			unknown protein		Potri.003G069200 [exp]	7.74	0.8515
AT3G19840		ATPRP40C	pre-mRNA-processing protein 40...		Potri.010G170400 [exp]	10.00	0.8538
AT1G28420	HD	HB-1	homeobox-1 (.1)		Potri.011G057700 [exp]	10.19	0.8470
AT5G53430		SET29, ATX5, SD...	SET domain group 29 (.1)		Potri.015G014300 [exp]	10.95	0.8437	SDG29.1
AT4G09980		EMB1691	EMBRYO DEFECTIVE 1691, Methylt...		Potri.012G144400 [exp]	11.48	0.8649
AT5G42950			GYF domain-containing protein ...		Potri.002G262300 [exp]	12.68	0.8487

Compare expression of checked genes

Potri.001G359700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.