Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55390 914 / 0 EDM2 ENHANCED DOWNY MILDEW 2 (.1.2) AT5G48090 350 / 2e-106 ELP1 EDM2-like protein1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G163301 [exp] 67 / 4e-13 AT5G55390 56 / 2e-10 ENHANCED DOWNY MILDEW 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023353 [exp] 1063 / 0 AT5G55390 890 / 0.0 ENHANCED DOWNY MILDEW 2 (.1.2) Lus10001729 [exp] 671 / 0 AT5G55390 622 / 0.0 ENHANCED DOWNY MILDEW 2 (.1.2) Lus10038453 [exp] 512 / 4e-169 AT5G55390 444 / 4e-143 ENHANCED DOWNY MILDEW 2 (.1.2) Lus10038454 [exp] 207 / 4e-57 AT5G55390 184 / 7e-50 ENHANCED DOWNY MILDEW 2 (.1.2) Lus10002269 [exp] 179 / 1e-50 AT5G55390 174 / 8e-50 ENHANCED DOWNY MILDEW 2 (.1.2) Lus10002268 [exp] 145 / 6e-39 AT5G48090 148 / 7e-41 EDM2-like protein1 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G359900.2 pacid=42791163 polypeptide=Potri.001G359900.2.p locus=Potri.001G359900 ID=Potri.001G359900.2.v4.1 annot-version=v4.1 ATGGCTTCATCGGACGACGAGGCGGATACTCTGCCGGAGTCTGTGTCAACCTATCATTTTGCAGATGATAAAGATGAGCCACTTTCATTCTCTTTGTTAC CAATTAGATGGAGGGAAAGCAAGAATTTTGACGATGGGAAGAAAAACCACATGATTTTCTTGAAAGGGAGTGTGGACAATGGGCTCCGCACCATATACAA GCAAGTCATAGCGTGGACGTTTGATTTGTCCAACACAACACCGCAGATATCAGTGCTCACTAAGGAGAAATGCTGGATGGAACTCGGAAAACCGAGAAAG AGCTATGAGATAATGATTAGGACGGTACTGATTACCGTGCATTGCCTTCATTTTGCAAGGTGGAACCCAGAAGCATCCGGGAAATCCGTGTGGGATTACC TGTCAAAAACTTTCAGTTTGTATGAGCACAGACCTTCTCAGAACGATTTGGTGGACCACTTGGATTTAATCGGTGAAGCTGTTCGAAGAGAAAACTCCTT AGCAAAATGCAAGTTCTTACTCAATTTTCTTGGGGAGAAGCCAAGGAAAAAGATGCTGTCTGATGAGTTCATTATTTTTCAGGATTTTCAAGCGGCAACA ATGTCTGCATTCATAGTCGATGATGTGGAAGATGATAACTTTGAAGATTTAGAAGAAGATGAATCCAATGATGAGGACGAACTATTTGATTCTGTTTGTG CATTTTGTGATAATGGCGGTAACCTTTTATGTTGTGAAGGGAGTTGCTTGAGGTCATTTCATGCAACTGTAGAGGCTGGTGAAGAATCTGCTTGCGAGTC TCTTGGCTTTACTAATAGGGAAGTTGAAGCAATGCAGAGTTTTTTTTGTAAGAATTGCAAATTTAAGCAGCATCAATGTTTTGCCTGTGGAAAGTTAGGT TCATCTGATAAATTTTCTGGTGCTGAGGTCTTTCGATGCGCTAATGCAACCTGTGGCCATTTTTATCACCCGCATTGTGCTGCAACAATGCTCCATCGAG AGGACAAAGTTGCTGCTGAGGAACTTCGGAAAAAGATTGCTGCTGGGGATAGTTTTGCATGTCCCATTCATAAGTGCTGCATTTGTAAACAAGTAGAGGA TAAGAAGAAAAGTGATTTGCAGTTTGCTGTGTGCAGGCGGTGTCCAACATCATACCACCAGAAATGCCTGCCAAAAGAGATAGCTTTTGAAAATGAAGCA GATGAAGATACTATAGCAAGGGCCTGGCAGAATCTTTTACCTAACCGTATACTGATTTATTGCTTGAAACATGACATAATTGAAGACATTGGAACTCCAG TAAGAGATCACATACGGTTCCCTGATGTTGGAGGAAAGAATACTGCTGCTAAAGTACAGAAAAGAAAGACATCTGAGCTTCCTGCAAATGAAGAGGAAAG TTTGTCAAAGAAAAAGAGGCTTACCTCAGAAGAATCATTTTCAGGAACATTTCGTACTAAAGCATCCAAAGAGATGTTTTCTTCTGCAAAAATTGTTAAA ATTACCAATGACAGTGAACAGATATCATCTGAATCAAATTCATTGGGGAAAATGAGAATGAATAATCCATCCAGAAAGTCTATAAGGGAAAATACAAAGT CTGCTTCATCAGAGGTGGAGAGGTCTACAACAGCCAACGTAAACAAGACCTCACTGGGTGACAAGTTATATGGCTTCATGACTATCAAGTCCGGAAAAGC AAAGCTCAGGAAGCAGGATATTTTTGGCAGTGAACTTGATAAATCTTTGGCTGTTAAGTCTGTTGGAAAGAAGTTAACCAGTGAACTGCCTTCATTGGAT GCCGATACACAAAGGAGGCTTTTAGCTTTAGTGAAAGAGGCTGCGTCATCAATAACCTTGGATAATGTTATAAAAAAGCATGAAGTTCCATCTACACATG TGCACTCTTCAAAAAATGTAGTGGACAAAAACATTACATTGGGAAAGGTGGAGGGTACTGTTGAGGCTGTTAGGACAGCTCTAAAAAAGCTGGAAGAAAA ATGCAGCATTGAAGATGCTAAAGCTGTTTGTGAACCGGATGTTCTGAACCAGGTGTTTAAATGGAAGAACAAGCTGAAAGTGTATCTTGCACCATTTCTG TACGGCATGCGCTATACATCCTTTGGTCGCCATTTTACAAAAGTAGAGAAACTTGTGGAGATTGCTGATATTCTCTGTTGGTATGTTGAAAATGGCGATA TGATTGTCGACTTCTGCTGTGGTGCTAATGATTTCAGTTGCATTATGAAAAAGAAGCTTGAAGAGATGGGAAAGAAGTGCTCATACAAAAACTACGATGT TATTCAGCCAAAGAATGACTTTAATTTTGAGAAGAGGGATTGGATGACTGTTTGTCCAGATGAACTGCCAAAAAAGGGTTCGCAGTTGATTATGGGACTG AATCCTCCTTTTGGAGTTAAAGCAGCCTTGGCTAACAAGTTCATTGACAAGGCTCTTCAGTTTAAACCCAAACTCCTTATTCTTATTGTTCCACCAGAAA CAGAGAGGTTAGACAAAAAGAAACCTTACAATTTAGTCTGGGAGAATGATCACTTTTTGTCAGGGAAGTCATTTTATCTGCCTGGGTCTGTTAATGAGAA TGACAAGCAAATGGATCAGTGGAATGTGACTGCCCCACCTCTTTATCTTTGGAGCCGGCAAGAGTGGAGTGCAAAACACAAGGCAATAGCTCAAAAGCAT GGTCATCCGTTCAAGCAACAGGAAATATCAAATTTGGACAAAAACCACTTTGAAACAAAAACCCCTGATCCTGTTAATGATCAATATAACAATGCTGGTG CATCGATGCTTCCAAATTATATTCCCTTGCAAAGTAAAGAGCCAGAAGAATCCAATTGTGGAATAGTTAATGATGATCATAAAGGAAGGTCTCAATGCAA CAACAGTGATAGAGAAAGCCAAGATAGTCATTGCCCTAGGAAGAGCCATTCTGATGAGACTTCAAGGAAGAAAAGGCAAGGTGAAAAAATGGTTGAAAGA GGAACGGGTGAGAAATCACTGGAGGGCAGACAGAATGGTGGAAAGAAGCCTTCTCCAAGTGATTCAGACAAGGGAGTGCATCGTCCTTCACCACCACCCA ATATTGATGGTAGATCCTTACTGGACGGTTCATCTAGATCCGTTGAAAAGCAATCACAGGCTGGCATAGGCAAAAATTGTTATCAGCATTTGGACCCTAG CTTTTCTGATTCATATTCGCAGCAGCATGCAACACCTTATGGCGGAAGCTGGGCCAGCAATCATGATGACATGAATAGAAGGCACTGCACTAATATTCAC GAGTCTTATTCACTCAACATCCATGGATTGTCCAGTGGTGGCAATATGGAGGAGCAATCTACACGATGCATGAACGGCACAGAATTTGTTAGACAGCCAC AAGTTCACCTTTATGGGCTACAAGGTGCTGATTCTGCTCGGTGGAATTATCCAAGTGGGCGATATCTGGGATATGGCCATATGGAACCAGCACCAGCTAT CCCTTATGGGCATATGGGATCGGCATCAGAACCACCCTATATGATGAATATGTCAGCGATGCAGCGATACGCTCCCCGGCTAGATGAATTAAACCATACG AGGATGAGCAGCTTGGGTCCCGAGCCATCCATGCTGAATAGAAATGGCAGTTATGATCCTAGAGCACCGGGAGCTGGATACCGGTTTGATTCGATGGGCT TTGCTCCTGGTCCTCAACATCCTTACCCACACCACTCAGCAGGCTGGCTAAATGAGTAG
AA sequence Show only first row Show all	>Potri.001G359900.2 pacid=42791163 polypeptide=Potri.001G359900.2.p locus=Potri.001G359900 ID=Potri.001G359900.2.v4.1 annot-version=v4.1 MASSDDEADTLPESVSTYHFADDKDEPLSFSLLPIRWRESKNFDDGKKNHMIFLKGSVDNGLRTIYKQVIAWTFDLSNTTPQISVLTKEKCWMELGKPRK SYEIMIRTVLITVHCLHFARWNPEASGKSVWDYLSKTFSLYEHRPSQNDLVDHLDLIGEAVRRENSLAKCKFLLNFLGEKPRKKMLSDEFIIFQDFQAAT MSAFIVDDVEDDNFEDLEEDESNDEDELFDSVCAFCDNGGNLLCCEGSCLRSFHATVEAGEESACESLGFTNREVEAMQSFFCKNCKFKQHQCFACGKLG SSDKFSGAEVFRCANATCGHFYHPHCAATMLHREDKVAAEELRKKIAAGDSFACPIHKCCICKQVEDKKKSDLQFAVCRRCPTSYHQKCLPKEIAFENEA DEDTIARAWQNLLPNRILIYCLKHDIIEDIGTPVRDHIRFPDVGGKNTAAKVQKRKTSELPANEEESLSKKKRLTSEESFSGTFRTKASKEMFSSAKIVK ITNDSEQISSESNSLGKMRMNNPSRKSIRENTKSASSEVERSTTANVNKTSLGDKLYGFMTIKSGKAKLRKQDIFGSELDKSLAVKSVGKKLTSELPSLD ADTQRRLLALVKEAASSITLDNVIKKHEVPSTHVHSSKNVVDKNITLGKVEGTVEAVRTALKKLEEKCSIEDAKAVCEPDVLNQVFKWKNKLKVYLAPFL YGMRYTSFGRHFTKVEKLVEIADILCWYVENGDMIVDFCCGANDFSCIMKKKLEEMGKKCSYKNYDVIQPKNDFNFEKRDWMTVCPDELPKKGSQLIMGL NPPFGVKAALANKFIDKALQFKPKLLILIVPPETERLDKKKPYNLVWENDHFLSGKSFYLPGSVNENDKQMDQWNVTAPPLYLWSRQEWSAKHKAIAQKH GHPFKQQEISNLDKNHFETKTPDPVNDQYNNAGASMLPNYIPLQSKEPEESNCGIVNDDHKGRSQCNNSDRESQDSHCPRKSHSDETSRKKRQGEKMVER GTGEKSLEGRQNGGKKPSPSDSDKGVHRPSPPPNIDGRSLLDGSSRSVEKQSQAGIGKNCYQHLDPSFSDSYSQQHATPYGGSWASNHDDMNRRHCTNIH ESYSLNIHGLSSGGNMEEQSTRCMNGTEFVRQPQVHLYGLQGADSARWNYPSGRYLGYGHMEPAPAIPYGHMGSASEPPYMMNMSAMQRYAPRLDELNHT RMSSLGPEPSMLNRNGSYDPRAPGAGYRFDSMGFAPGPQHPYPHHSAGWLNE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Potri.001G359900 [exp]	0	1
AT1G11900			Tetratricopeptide repeat (TPR)...		Potri.001G273100 [exp]	2.00	0.8937
AT1G69020			Prolyl oligopeptidase family p...		Potri.010G137801 [exp]	2.44	0.8760
AT3G56320			PAP/OAS1 substrate-binding dom...		Potri.019G056800 [exp]	3.16	0.8661
AT5G58410			HEAT/U-box domain-containing p...		Potri.019G126000 [exp]	4.24	0.8671
AT1G13810			Restriction endonuclease, type...		Potri.008G039800 [exp]	4.58	0.8690
AT3G48470		EMB2423	embryo defective 2423 (.1)		Potri.015G090700 [exp]	5.83	0.8503
AT2G39340		AtSAC3A	yeast Sac3 homolog A, SAC3/GAN...		Potri.008G047700 [exp]	5.91	0.8706
AT4G32551		RON2, LUG	ROTUNDA 2, LEUNIG, LisH dimeri...		Potri.018G033300 [exp]	6.48	0.8298
AT4G39680			SAP domain-containing protein ...		Potri.005G080500 [exp]	6.92	0.8682
AT5G08490		SLG1	SLOW GROWTH 1, Tetratricopepti...		Potri.004G134300 [exp]	7.34	0.8691

Compare expression of checked genes

Potri.001G359900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.