Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26700 1019 / 0 ATFIM1 ARABIDOPSIS THALIANA FIMBRIN 1, fimbrin 1 (.1.2.3) AT5G35700 1013 / 0 FIM2, FIM5 FIMBRIN5, fimbrin-like protein 2 (.1) AT5G55400 1008 / 0 Actin binding Calponin homology (CH) domain-containing protein (.1) AT2G04750 966 / 0 Actin binding Calponin homology (CH) domain-containing protein (.1) AT5G48460 903 / 0 Actin binding Calponin homology (CH) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G086500 [exp] 1325 / 0 AT4G26700 1025 / 0.0 ARABIDOPSIS THALIANA FIMBRIN 1, fimbrin 1 (.1.2.3) Potri.014G163100 [exp] 1053 / 0 AT5G35700 1028 / 0.0 FIMBRIN5, fimbrin-like protein 2 (.1) Potri.002G251600 [exp] 962 / 0 AT5G48460 1108 / 0.0 Actin binding Calponin homology (CH) domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016580 [exp] 1083 / 0 AT4G26700 986 / 0.0 ARABIDOPSIS THALIANA FIMBRIN 1, fimbrin 1 (.1.2.3) Lus10014894 [exp] 1068 / 0 AT4G26700 946 / 0.0 ARABIDOPSIS THALIANA FIMBRIN 1, fimbrin 1 (.1.2.3) Lus10038235 [exp] 922 / 0 AT5G48460 1068 / 0.0 Actin binding Calponin homology (CH) domain-containing protein (.1) Lus10025865 [exp] 878 / 0 AT5G48460 1013 / 0.0 Actin binding Calponin homology (CH) domain-containing protein (.1) Lus10012361 [exp] 798 / 0 AT5G35700 843 / 0.0 FIMBRIN5, fimbrin-like protein 2 (.1) Lus10006407 [exp] 755 / 0 AT5G35700 842 / 0.0 FIMBRIN5, fimbrin-like protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0188 [poplar] [flax] CH PF00307 [poplar] [flax] CH Calponin homology (CH) domain
Representative CDS sequence Show only first row Show all	>Potri.001G360100.1 pacid=42789485 polypeptide=Potri.001G360100.1.p locus=Potri.001G360100 ID=Potri.001G360100.1.v4.1 annot-version=v4.1 ATGTCTAGTTATATGGGTGTTCATGTCTCTGATCAATGGCTGCAAAGTCAGTTTACGCAGGCTGAGCTTCGCAGCCTCAAGTCAAAATTTATAGCAATGA AGAATCAAAATGGACAAGTTACTGTTGGAGATATGCCGCTTCTGATGGTCAAATTAAACGCTTTTAATTCAATGTTTAACGAGGAGGAGATAGCTGGGAT ATTGAATGAGTCGCATGCCGACCTAAGTAATGAGATCGATTTTGAAGCCTTCCTCAAGGCATACTTGGATTTACAAGGTCTAGCTACAGCAAAATCTGGG GCTTCTAAGCAGAGTTCATCTTTCCTTAAGGCCACAACCACTACTCTTCTTCACACAATTAGTGAATCTGAGAAAGCATCTTACGTTGCTCACATAAACA GCTATCTCGGGGATGACCCATTTCTGAAGCAGTTTCTTCCCATAGATCCAGCTACAAATGATTTATTTAATCTTGCTAAAGACGGAGTGCTGTTATGTAA ACTCATCAATGTTGCTGTGCCAGGGACTATAGATGAACGAGCCATCAACACGAAACGGGTTCTTAACCCATGGGAAAGAAATGAGAACCATACCCTCTGC CTCAACTCTGCAAAAGCTATTGGATGCACTGTGGTAAACATTGGCACACAGGACTTGGTGGAAGGAAGGCCTCATCTGTTACTTGGGTTGATTTCTCAGA TTATAAAGATTCAACTACTGGCAGATCTTAGTCTTAAGAAGACACCTCAGCTTGTGGAATTGGTGGATGCCAACAATGATGTTGAGGAGCTTTTGGGATT AGCCCCTGAAAAGGTCCTATTGAAATGGATGAATTTCCATCTCAAGAAAGCAGGCTACGAGAAACCTGTTTCGAATTTTTCTTCTGATTTGAAGGATGGA AAGGCTTATGCATACCTGCTTAATGTTCTTGCACCAGAGCACTGCAGTCCATCTACATTGGATTCCAAAGATCCTAAGGAAAGGGCTAAGCTTGTTCTTG ATCATGCAGAGCGGATGGACTGCAAACGATATTTAAAACCAGAAGACATCGTTGAAGGATTGCCAAATCTGAATCTTGCATTTGTGGCACAAATATTTCA TCAAAGGAATGGCCTGACCACAGACAGCAAAAAGATTTCCTTTGCTGAGATGATGACCGATGATGTGCAAACTTCTAGAGAGGAAAGATGTTTTCGACTA TGGATTAACAGTCTTGGAATTGTTACATATGTTAACAATGTATTTGAGGATGTTAGAAATGGATGGATACTTTTGGAAGTGCTTGACAAGGTTTCTCCTG GATCAGTTAACTGGAAGCAGGCATCTAAGCCTCCAATCAAGATGCCATTCAGAAAAGTAGAGAATTGCAATCAAGTCATAAGGATTGGAAGACAAATGAA ATTTTCCCTCGTTAATGTAGCTGGAAATGATTTTGTACAAGGAAATAAGAAGCTCATACTGGCTTTCTTATGGCAGTTGATGAGATATAATATGCTTCAA CTTCTGAAGAACTTGAGATCCCATTCCCAAGGAAAGGAGATAACTGATGCAGATATTCTAAAATGGGCAAACAATAAAGTTAAACATACAGGAAGAACTT CCAAAATCGTGAACTTCAAGGATCAGAGCCTGTCAAGTGGAATATTCTTCCTTGAGCTTCTCAGTGCTGTTGAGCCAAGGGTGGTTAATTGGAACCTCGT CACCAAGGGTGAAAGCGATGAGGAGAAGAGATTGAATGCTACATACATTATCAGTGTGGCACGGAAACTGGGCTGTTCAATTTTCCTGTTGCCTGAAGAC ATCATGGAGGTAAACCAGAAGATGATTCTGACTCTAGCTGCCAGCATAATGTACTGGAGCCTGCAAAAAGCAGTGGAAGATGGGGAATCATCTCCATCCC CTTCTAATGGGACTTGTACCGCTACTCCTGATGCATCCCCAGCTCCATCTGTCAACGGCGAAGATGAAATTTCTTCCTTGGGTGGTGAAGTTTCAAACTT AAATATTGATGATGTTGCCTCCGACACTACAGTCTCCTCACAGCTTGAGAATGAGGAATTTACTGCAGTAGAGTGA
AA sequence Show only first row Show all	>Potri.001G360100.1 pacid=42789485 polypeptide=Potri.001G360100.1.p locus=Potri.001G360100 ID=Potri.001G360100.1.v4.1 annot-version=v4.1 MSSYMGVHVSDQWLQSQFTQAELRSLKSKFIAMKNQNGQVTVGDMPLLMVKLNAFNSMFNEEEIAGILNESHADLSNEIDFEAFLKAYLDLQGLATAKSG ASKQSSSFLKATTTTLLHTISESEKASYVAHINSYLGDDPFLKQFLPIDPATNDLFNLAKDGVLLCKLINVAVPGTIDERAINTKRVLNPWERNENHTLC LNSAKAIGCTVVNIGTQDLVEGRPHLLLGLISQIIKIQLLADLSLKKTPQLVELVDANNDVEELLGLAPEKVLLKWMNFHLKKAGYEKPVSNFSSDLKDG KAYAYLLNVLAPEHCSPSTLDSKDPKERAKLVLDHAERMDCKRYLKPEDIVEGLPNLNLAFVAQIFHQRNGLTTDSKKISFAEMMTDDVQTSREERCFRL WINSLGIVTYVNNVFEDVRNGWILLEVLDKVSPGSVNWKQASKPPIKMPFRKVENCNQVIRIGRQMKFSLVNVAGNDFVQGNKKLILAFLWQLMRYNMLQ LLKNLRSHSQGKEITDADILKWANNKVKHTGRTSKIVNFKDQSLSSGIFFLELLSAVEPRVVNWNLVTKGESDEEKRLNATYIISVARKLGCSIFLLPED IMEVNQKMILTLAASIMYWSLQKAVEDGESSPSPSNGTCTATPDASPAPSVNGEDEISSLGGEVSNLNIDDVASDTTVSSQLENEEFTAVE

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G26700		ATFIM1	ARABIDOPSIS THALIANA FIMBRIN 1...		Potri.001G360100 [exp]	0	1
AT1G09960		ATSUC4, SUC4, A...	sucrose transporter 4 (.1)		Potri.002G106900 [exp]	1.41	0.8318
AT3G20970		ATNFU2, NFU4	ARABIDOPSIS THALIANA NFU DOMAI...		Potri.010G237400 [exp]	5.19	0.8185	NFU4.2
AT2G03620		AtMRS2-5, AtMGT...	magnesium transporter 3 (.1.2)		Potri.010G158100 [exp]	15.49	0.7657
AT3G10330			Cyclin-like family protein (.1...		Potri.006G048400 [exp]	16.43	0.7253	TFIIB1.2
AT1G07705			NOT2 / NOT3 / NOT5 family (.1....		Potri.001G349400 [exp]	23.36	0.7968
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Potri.013G026600 [exp]	29.22	0.8203
AT5G55510			Mitochondrial import inner mem...		Potri.011G088500 [exp]	30.00	0.7678
AT3G47590			alpha/beta-Hydrolases superfam...		Potri.018G068000 [exp]	32.20	0.7760
AT2G21250			NAD(P)-linked oxidoreductase s...		Potri.009G125100 [exp]	32.49	0.8036	S6PDH.2
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Potri.003G021000 [exp]	35.41	0.7355

Compare expression of checked genes

Potri.001G360100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.