Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20150 803 / 0 Kinesin motor family protein (.1) AT3G23670 417 / 5e-128 PAKRP1L ,KINESIN-12B phragmoplast-associated kinesin-related protein, putative (.1.2) AT4G14150 421 / 1e-126 KINESIN-12A, PAKRP1 phragmoplast-associated kinesin-related protein 1 (.1) AT4G26660 394 / 6e-121 unknown protein AT5G55520 379 / 2e-115 unknown protein AT3G44050 288 / 5e-80 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G19050 283 / 1e-77 POK2 phragmoplast orienting kinesin 2 (.1) AT3G17360 271 / 4e-74 POK1 phragmoplast orienting kinesin 1 (.1) AT3G63480 204 / 7e-57 ATP binding microtubule motor family protein (.1.2) AT5G47820 194 / 2e-50 FRA1 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G235500 [exp] 426 / 2e-128 AT3G23670 1399 / 0.0 phragmoplast-associated kinesin-related protein, putative (.1.2) Potri.014G149000 [exp] 417 / 3e-125 AT3G23670 1426 / 0.0 phragmoplast-associated kinesin-related protein, putative (.1.2) Potri.004G193700 [exp] 289 / 1e-80 AT3G44050 1236 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.009G156000 [exp] 284 / 1e-78 AT3G44050 1231 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G145800 [exp] 281 / 6e-77 AT3G19050 1765 / 0.0 phragmoplast orienting kinesin 2 (.1) Potri.005G038900 [exp] 191 / 3e-52 AT3G63480 533 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.002G106000 [exp] 198 / 3e-51 AT5G60930 1524 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G150800 [exp] 198 / 3e-51 AT5G60930 1386 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.009G026000 [exp] 189 / 1e-48 AT3G45850 1520 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016589 [exp] 1159 / 0 AT3G20150 914 / 0.0 Kinesin motor family protein (.1) Lus10021969 [exp] 388 / 2e-115 AT3G23670 689 / 0.0 phragmoplast-associated kinesin-related protein, putative (.1.2) Lus10008438 [exp] 287 / 1e-79 AT3G44050 1209 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10013377 [exp] 284 / 5e-78 AT3G44050 1290 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10012048 [exp] 282 / 3e-77 AT3G19050 1758 / 0.0 phragmoplast orienting kinesin 2 (.1) Lus10018341 [exp] 280 / 6e-77 AT3G19050 1074 / 0.0 phragmoplast orienting kinesin 2 (.1) Lus10027934 [exp] 280 / 7e-77 AT3G19050 1521 / 0.0 phragmoplast orienting kinesin 2 (.1) Lus10017113 [exp] 280 / 9e-77 AT3G17360 1085 / 0.0 phragmoplast orienting kinesin 1 (.1) Lus10041262 [exp] 255 / 6e-70 AT3G23670 559 / 8e-180 phragmoplast-associated kinesin-related protein, putative (.1.2) Lus10018120 [exp] 191 / 3e-49 AT3G45850 1583 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00225 [poplar] [flax] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Potri.001G360200.3 pacid=42789893 polypeptide=Potri.001G360200.3.p locus=Potri.001G360200 ID=Potri.001G360200.3.v4.1 annot-version=v4.1 ATGAAAGGGGAAGCTAGCGAGAATAATCGGTTCTTAGGAACCTTATCATCTTCATCGATAAGAAATTTACTTCCCAGATCCAAGCGCAAATCCAAAAAAT TCTCAGAAAACACTCCTCCTCCACTTCATCCTAACATCCAAATCAACGATCCTCCTCTCTCCCCTTCCATCCCTAAACTCTTTCCACCCTCCAAGTCTTT CTCCTCTTCTGCTTCTCTCAACAGATCAGACGGTCAGAATGTTCAATCACTCTCTCCTCGGGACCCACCACCGCTACTGGGACAAGTCGATGGATCCCAC GGGGCATTGGAGGATTTGGATCCGGCAGTGAAGGTTGTGGTGAGAATTAGAGCAGTAAATGATGTTAAAAGAGAGGGTGGTGATGGTGTAGTGAGGAAGC TTTCTTCGAATTCGGTATCAATTGGTGATAGGAAATTCAATTTCGACTCGGTTCTTGATTCGAATTCAAACCAGGAAGATGTCTTCCAGTTAGTTGGTGT TCCTTTGGTTAAAAGTGCATTAGCAGGTTACAATGCGTCCATCTTGTCGTATGGAGAGACTGGGAGTGGTAAGACATACACCATGTGGGGCCCACCAAGC GCGATGGTTGAGGATCATTCAACGGGTAGCAACCAAGGCATCGTTCCTCGCATCTTCCATATGCTATTCTCGGAGATTCAGCGACAGCAAGAGGACTCCC AAATGAAGCAGATCAATTATCAGTGCAGATGTTCATTTCTTGAGATATACAACGAGCAAATAGGGGACTTGCTTGATCCAGGTCAAAGAAATCTTGAGAT AAAGGATGATCCGAAAAATGGATTATACGTCGAGAATTTGACCGAGGAGTATGTGAGCAGCTATGAGGATGTAACTCAATTATTGATCAAGGGGCTCTCA AGTAAAAAAGTTGGAGCAACGAGCATAAATTCTAAGAGCTCTCGGTCCCACATTGTATTTACTATGATCATTGAGTCATGGTGCAAGGGGACTTCATCAA AATGTTTCAGTAGTTCAAAAATCAGCAGAATCAGCCTCTTTGATCTTGCTGGACTGGATAGAAATAAACTTGTTGATGCCGATAGACAATTTGTGCAGGA AGGCAAAAGTGTAAAGAAGTCCCTGTCACAGCTTGGGCAATTGGTGAACACTCTAGCAAAGGAAAATCAACCAGGGAAATTTGCAGTTTTTCCATACCAA GGATCCTGTTTAACACACTTGCTGCGAGAATCTCTTGGTGGCAATGCAAAACTCACAGTCATGTGCTGCATCTCCCCTAATAACAGAAACAATGGTGAGA CATTAAGGACACTCCGATTTGGCCAGCGAGTTAAATTCATAAAAAATGACCCGGTTATAAATGAAATATCAGAGGATGATGTTAATGATTTGAGTGATCA AATTCGTCAGTTGAAGGAAGAACTTATAAGAGCGAAATCTGATGTACATAATTCATTCGAGGGTAGAAGCGGATACTTCAAGGGGAGAAATGTAAGAGAA AGCTTGAATCACTTGAGAGTGAGTCTTAATCGCTCTTTGATGCTACCCCGCATAGATACTGATTCTGACAATGAGGTGAACATTGATGAGAATGATGTGA GGGAACTACACCAGCAACTCAATAAATTACATTGTTCTCCTGATGAGAACTCAAGAGATCTATCTGATAATGGAGACTCTGCCCACTTTTCTTCTGTAGA AGAAAGCTTTGAGACAGATTTGGTGAGTGACAGCGAATTGAATGGCCCACATGAATTTGAAAGTGAAGAAATCAATCTTGAGAAAGAAAAGGAAGGTGAA TCACAAGACGACTTCCCAGCTGCCCCTGAAGCCTCAGATCCTCCGCTTCGAACCAGCATTAATATTAGTCCATGCCGTCAGTCTGCAGTCCTCCATGAGC CAATGTTGTCTGAGTCACCTAAAATTGGAAATACCAGGAAAAGCATGGTCATTCCATCATTATTTTCAGCAAGTCAGAACAATATGTCAGACAGCTCCAA CTTCCAGTCAGATGTACCGCCCCAGTCACTTAAGCAAAGTGAAAACATCAGATCATCTTTGTGTTCAAGCAAGATGTTTCCAGGCCCCACTGAGTCCTTG GCTGCTAGCCTTCAGAGAGGCTTGCAGATTATTGACTATCATCAGCGGAACTCTGCATCAAACAGATCTTCAGTTTCATTCTCCTTCGAGCCCTTGTCAT TAAAACCTTGTTCCGAAGTTGACAAAGTGAATGTGTCTCTTCAGAAGTTAGCAGAACATGGATCATATGCTTCCTTACTTTGTACATCTTGTAAACAGAA AATCAATGATAGTTCAAACGAGGTCCAGGATAGCCTGACATGGGTGGTGGCAGAGGAAGAAGCTCGGAAGCCTAACCAACTGATTAGTCAAGTGGTCAAA GATTCAGGCAACGGTTTAGCAATAACTAACAACGGAGAGGAGAAGGACCTTGAAAATTTATGTATGGAGCAAGCAACTAAAATTGAGCAGCTGAATCAGT TGGTTGAAAAGTACAAACAGGAAAGAGAACATTATATCATGACTGGTCAAGAAGGGGATGAGATTCTGTCCAGGAAATCAAAGAATCAAATGACACTCTT TGAAGGATCAGCAGATGAAGAGTACCAGTCATTAAAGGATCGAAACAAGCTTCGAAGTGTTGAGAATAATCAGCTTGAGATTAGAGAAGAAGAATATGAA GTAGAAGATGCGATGGATAAAAACACATATTTTGATTTGAAGGAGAAGGAAGCACTTCTTCAGGAAATTCAAAACTTACAGATGAAGTTGCAGTCGTATA CTGATGCATCCAAAAACAGATCTACTGAAAAGCTGAGATCCTCTTTGTTGATACAATCCATTCAACTATGCAAAAGTGCAGACACCCAAAATAATAGTTT GGAAGAATATGAGAGAGAGAGACAGAGATGGACAGAAATGGAGAGTGATTGGATTTCTTTAACTGATGACCTTAGAGTTGATCTTCAATGCAGTCGTCAG CATGCAGAGAAGGTGGAGATGGAATTGAGATTAGAGAAGAAATGCACAGAGGAGTTAGATGATGCGCTTCATAGGGCTGTCCTTGGGCATGCTAGAATGG TTGAACACTATGCTGATCTACAAGAGAAGTACAATGACTTGGAGGGAAAGCACCGTGCAATCATGGAAGGGATAGCAGAGGTGAAGAGGGCAGCAGCAAA GGCAGGAAAAAAGGGCGGAACTCGCTTTGCCAAATCACTTCAAGCTGAGCTTTCTTCCTTAAGAGTGGAAAGGGAAAGGGAAAGGGAGTTCTTGAAAAAG GAGAACAAGAGTCTGAAAATCCAGCTTAGAGACACTGCAGAAGCTGTTCATGCTGCTGGAGAACTCCTTGTTAGGCTGAGAGAAGCTGAGCAAGCTGCCT CAGTTGCAGAGGAGAACTTCAACGTGGTTCAGCAAGAAAATGAAAAATTGAAGAAGCAAACGGAGAAGCTTAAGAGAAAACACAAAATGGAGATGATCAC CATGAAGCAGTACATGGCAGAAAGCAGACTTCCAGAATCTGCATTGCAACCACTATACCGAGATAATTCTGACGGAGTACACAACACGATCCCAGATGAT GACCAGGCATGGAGGGCAGAATTTGGGGCAATCTATCAAGAACACTACTAA
AA sequence Show only first row Show all	>Potri.001G360200.3 pacid=42789893 polypeptide=Potri.001G360200.3.p locus=Potri.001G360200 ID=Potri.001G360200.3.v4.1 annot-version=v4.1 MKGEASENNRFLGTLSSSSIRNLLPRSKRKSKKFSENTPPPLHPNIQINDPPLSPSIPKLFPPSKSFSSSASLNRSDGQNVQSLSPRDPPPLLGQVDGSH GALEDLDPAVKVVVRIRAVNDVKREGGDGVVRKLSSNSVSIGDRKFNFDSVLDSNSNQEDVFQLVGVPLVKSALAGYNASILSYGETGSGKTYTMWGPPS AMVEDHSTGSNQGIVPRIFHMLFSEIQRQQEDSQMKQINYQCRCSFLEIYNEQIGDLLDPGQRNLEIKDDPKNGLYVENLTEEYVSSYEDVTQLLIKGLS SKKVGATSINSKSSRSHIVFTMIIESWCKGTSSKCFSSSKISRISLFDLAGLDRNKLVDADRQFVQEGKSVKKSLSQLGQLVNTLAKENQPGKFAVFPYQ GSCLTHLLRESLGGNAKLTVMCCISPNNRNNGETLRTLRFGQRVKFIKNDPVINEISEDDVNDLSDQIRQLKEELIRAKSDVHNSFEGRSGYFKGRNVRE SLNHLRVSLNRSLMLPRIDTDSDNEVNIDENDVRELHQQLNKLHCSPDENSRDLSDNGDSAHFSSVEESFETDLVSDSELNGPHEFESEEINLEKEKEGE SQDDFPAAPEASDPPLRTSINISPCRQSAVLHEPMLSESPKIGNTRKSMVIPSLFSASQNNMSDSSNFQSDVPPQSLKQSENIRSSLCSSKMFPGPTESL AASLQRGLQIIDYHQRNSASNRSSVSFSFEPLSLKPCSEVDKVNVSLQKLAEHGSYASLLCTSCKQKINDSSNEVQDSLTWVVAEEEARKPNQLISQVVK DSGNGLAITNNGEEKDLENLCMEQATKIEQLNQLVEKYKQEREHYIMTGQEGDEILSRKSKNQMTLFEGSADEEYQSLKDRNKLRSVENNQLEIREEEYE VEDAMDKNTYFDLKEKEALLQEIQNLQMKLQSYTDASKNRSTEKLRSSLLIQSIQLCKSADTQNNSLEEYERERQRWTEMESDWISLTDDLRVDLQCSRQ HAEKVEMELRLEKKCTEELDDALHRAVLGHARMVEHYADLQEKYNDLEGKHRAIMEGIAEVKRAAAKAGKKGGTRFAKSLQAELSSLRVEREREREFLKK ENKSLKIQLRDTAEAVHAAGELLVRLREAEQAASVAEENFNVVQQENEKLKKQTEKLKRKHKMEMITMKQYMAESRLPESALQPLYRDNSDGVHNTIPDD DQAWRAEFGAIYQEHY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G20150			Kinesin motor family protein (...		Potri.001G360200 [exp]	0	1
AT1G18370		HIK, ATNACK1	HINKEL, ARABIDOPSIS NPK1-ACTIV...		Potri.015G044600 [exp]	1.41	0.9841	HIK.3
AT5G48310			unknown protein		Potri.014G172000 [exp]	2.00	0.9812
AT1G18370		HIK, ATNACK1	HINKEL, ARABIDOPSIS NPK1-ACTIV...		Potri.012G054400 [exp]	2.23	0.9775
AT3G23890		ATTOPII, TOPII	topoisomerase II (.1.2)		Potri.009G058900 [exp]	2.44	0.9771	TOP2.3
AT5G27550			P-loop containing nucleoside t...		Potri.013G020700 [exp]	2.82	0.9792
AT1G72250			Di-glucose binding protein wit...		Potri.011G140000 [exp]	3.00	0.9730
AT4G14330			P-loop containing nucleoside t...		Potri.010G069400 [exp]	3.00	0.9793
AT5G60930			P-loop containing nucleoside t...		Potri.005G150800 [exp]	3.16	0.9717
AT3G10310			P-loop nucleoside triphosphate...		Potri.006G048600 [exp]	4.58	0.9752
AT1G03780		AtTPX2, TPX2	targeting protein for XKLP2 (....		Potri.017G013100 [exp]	4.69	0.9711

Compare expression of checked genes

Potri.001G360200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.