Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59240 294 / 3e-102 Ribosomal protein S8e family protein (.1) AT5G20290 285 / 1e-98 Ribosomal protein S8e family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G056900 [exp] 337 / 3e-119 AT5G59240 302 / 3e-105 Ribosomal protein S8e family protein (.1) Potri.017G110000 [exp] 333 / 2e-117 AT5G59240 317 / 2e-111 Ribosomal protein S8e family protein (.1) Potri.001G262100 [exp] 324 / 5e-114 AT5G59240 302 / 2e-105 Ribosomal protein S8e family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025887 [exp] 285 / 4e-98 AT5G59240 341 / 2e-120 Ribosomal protein S8e family protein (.1) Lus10002338 [exp] 294 / 1e-94 AT3G25230 874 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10003171 [exp] 292 / 2e-94 AT3G25230 871 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10016587 [exp] 251 / 2e-84 AT5G59240 304 / 4e-105 Ribosomal protein S8e family protein (.1) Lus10003761 [exp] 219 / 9e-73 AT5G59240 277 / 8e-96 Ribosomal protein S8e family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01201 [poplar] [flax] Ribosomal_S8e Ribosomal protein S8e
Representative CDS sequence Show only first row Show all	>Potri.001G360500.1 pacid=42793206 polypeptide=Potri.001G360500.1.p locus=Potri.001G360500 ID=Potri.001G360500.1.v4.1 annot-version=v4.1 ATGGGGATTTCTCGTGATTCTATGCACAAGAGACGTGCTACTGGTGGCAAAAAGAAAGCTTGGAGGAAAAAGAGAAAGTATGAACTCGGAAGGCAACCTG CAAGCACTAAATTGTCAAGCAACAAGACAGTCAGGAGGATTAGGGTTCGAGGAGGAAATGTAAAGTGGCGTGCTCTGAGGCTTGATACTGGAAACTACTC ATGGGGCAGTGAGGCTGTGACCCGAAAGACCAGAATTCTTGATGTGGTGTACAATGCATCTAACAATGAACTGGTTCGTACTCAGACTTTGGTGAAGAGT GCCATTGTTCAGGTTGATGCTGCGCCTTTCAAGCAGTGGTATCTCCAGCACTATGGTATTGACATTGGCCGGAAGAAGAAAACCACAGCTGCAAAGAAGG AAGGAGAGGAAGGTGAAGCTGTTACTGAGGAGGTCAAGAAGAGCAACCATGTACTGAGAAAGTTGGAAAAGAGACAACAGATTCGCAAGCTTGACCCACA TATTGAAGAGCAATTTGGCAGTGGCCGTTTATTAGCTAGTATTTCATCACGTCCTGGTCAGTGTGGCCGTGCTGATGGGTATATCTTGGAGGGCAAAGAG TTGGAGTTCTACTTGAAGAAGATACAGAGGAAGAAGGGCAAGGGAGCTGGTGCATAA
AA sequence Show only first row Show all	>Potri.001G360500.1 pacid=42793206 polypeptide=Potri.001G360500.1.p locus=Potri.001G360500 ID=Potri.001G360500.1.v4.1 annot-version=v4.1 MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPASTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKS AIVQVDAAPFKQWYLQHYGIDIGRKKKTTAAKKEGEEGEAVTEEVKKSNHVLRKLEKRQQIRKLDPHIEEQFGSGRLLASISSRPGQCGRADGYILEGKE LEFYLKKIQRKKGKGAGA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G59240			Ribosomal protein S8e family p...		Potri.001G360500 [exp]	0	1
AT2G34480			Ribosomal protein L18ae/LX fam...		Potri.004G063300 [exp]	2.00	0.8221	RPL18.6
AT5G20180			Ribosomal protein L36 (.1.2)		Potri.006G069000 [exp]	8.94	0.6949
AT5G11810			unknown protein		Potri.006G230000 [exp]	10.09	0.6970
AT4G20440		SMB	small nuclear ribonucleoprotei...		Potri.001G440100 [exp]	12.72	0.7537
AT3G21860		ASK10	SKP1-like 10 (.1)		Potri.005G094800 [exp]	13.49	0.7037
AT4G31985			Ribosomal protein L39 family p...		Potri.006G260500 [exp]	17.57	0.6162
AT1G08360			Ribosomal protein L1p/L10e fam...		Potri.004G202766 [exp]	19.07	0.6876
AT3G13920		RH4, TIF4A1, EI...	eukaryotic translation initiat...		Potri.018G061050 [exp]	23.36	0.7368
AT4G29170		ATMND1	Mnd1 family protein (.1.2)		Potri.018G069800 [exp]	23.55	0.6997
AT3G06610			DNA-binding enhancer protein-r...		Potri.008G105000 [exp]	24.61	0.7405

Compare expression of checked genes

Potri.001G360500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.