Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55500 601 / 0 ATXYLT "beta-1,2-xylosyltransferase", ARABIDOPSIS THALIANA BETA-1,2-XYLOSYLTRANSFERASE, beta-1,2-xylosyltransferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016585 [exp] 671 / 0 AT5G55500 616 / 0.0 "beta-1,2-xylosyltransferase", ARABIDOPSIS THALIANA BETA-1,2-XYLOSYLTRANSFERASE, beta-1,2-xylosyltransferase (.1) Lus10014902 [exp] 306 / 1e-101 AT5G55500 254 / 2e-81 "beta-1,2-xylosyltransferase", ARABIDOPSIS THALIANA BETA-1,2-XYLOSYLTRANSFERASE, beta-1,2-xylosyltransferase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04577 [poplar] [flax] DUF563 Protein of unknown function (DUF563)
Representative CDS sequence Show only first row Show all	>Potri.001G360600.1 pacid=42790024 polypeptide=Potri.001G360600.1.p locus=Potri.001G360600 ID=Potri.001G360600.1.v4.1 annot-version=v4.1 ATGAACAAAACGCATTCAAAGCTGTTGAAGATCGTTATCTTTCTCTTCGCCCTCAACTCCCTCTCTCTTTGCCTCTACTTCTCCTCTCACCACCACAATT CTAACAACAAACAAGAGGAATACCACTCTTCTCTAACGTCAAACGACCGTTCCCATACGGAAAACAACAGTAACAGTAACAGTAATAATGTCAATCTAAA AGCTTGGCCAATACTTCCTTCTTACCTTCCATGGACTCAAAACCCTAACAAAGTCACCGTCCGTTCATGCGAAGCTTACTTCGGAAACGGCTTTGGCCGC CGCATCGACGTGCTTTTGAGCGGCGGATGGTTCAGGTGCTTGTACAGCGAGACATTAAGGAGCTCGATATGCGAGGGAGGGAGTGTACGGATGGTTCCGG AGAGGATTAAAATGTCGAGAGGAGGTGAGAGGATCGAGGAGGTAATTGGTAGAAGTGAGGAGGAGGAGTTGCCGGATTTCGAAAACGGTGCGTTTGAGAT TCTTGGATCGACAGCGAGATCTAAATGGCTTGTTGATGAAGGTTTCTTAGATGCGTTTGTTCCTGATGGGAATGTAATGCGACACACCATGCGTGGGTTG ATCCGATCGATTCGGGTTGTGGATAATAACAGCAAGGAGTTTCATTGCGACCTGTGGATTGAGGAGCCAACCCTTTTGGTCACCAGATTTGAGTATGCAA ATCTTTTTCATACTATCACAGATTGGTACAGTGCATATGTTGCTTCGAGAGTCACCGACTTGCCTTATCGACCTCACTTGATTTTTGTGGATGGTCACTC CAGAACACCCTTGGAAGGAACTTGGAAAGCGTTGTTTTCAAGCGTTAGATATGCTAAGGAATTTAGTGGCTCAGTTTGTCTTCGGCATGCTATTCTTGTC CCTTTGGGATATGAGACTGCACTCTTCAAGGGACTGACTGAAAAAATAAATTGTCAGGGAGCATCAGCGCATGATCTTTGGCAAAACCCTGATGACCAAA AAACTGCTCGATTGTCTGAGTTTGGAGAAATGATCAGGGCAGCTTTTGACTTCCCTGTCAGTAGACACAGAGCTGAAAAGCCATTTTCTGGGCATAATGT CCTCTTTGTCAGACGCGAAGATTATTTAGCCCATCCACGCCATGTTGGTAAAGTTGAATCAAGGCTTAGCAATGAACAAGAAGTTTTTGATTCATTGCAG ACCTGGGTATCTAATCATTTGGAGTGCAAAGTGAATCTTATCAATGGATTGTTTGCACATATGTCTATGAAGGAGCAAGTCCGAGCCGTTCAAGATGCTT CTGTTATCATTGGTGCTCATGGCGCAGGTCTCACTCACATAGTATCTGCAACACCAAAAACAATAATTCTGGAGATTATTAGTAGCTACTTTAGACGCCC ACATTTTCAATTGATTGCTGAGTGGAAAGGGTTAGAGTATCATGCCATCAATCTTGATGGATCACATGCGCATCCATCAGTTGTCATAGACAGGTTTAGC AGGATAATGAAAAGTCTTGGATGTTGA
AA sequence Show only first row Show all	>Potri.001G360600.1 pacid=42790024 polypeptide=Potri.001G360600.1.p locus=Potri.001G360600 ID=Potri.001G360600.1.v4.1 annot-version=v4.1 MNKTHSKLLKIVIFLFALNSLSLCLYFSSHHHNSNNKQEEYHSSLTSNDRSHTENNSNSNSNNVNLKAWPILPSYLPWTQNPNKVTVRSCEAYFGNGFGR RIDVLLSGGWFRCLYSETLRSSICEGGSVRMVPERIKMSRGGERIEEVIGRSEEEELPDFENGAFEILGSTARSKWLVDEGFLDAFVPDGNVMRHTMRGL IRSIRVVDNNSKEFHCDLWIEEPTLLVTRFEYANLFHTITDWYSAYVASRVTDLPYRPHLIFVDGHSRTPLEGTWKALFSSVRYAKEFSGSVCLRHAILV PLGYETALFKGLTEKINCQGASAHDLWQNPDDQKTARLSEFGEMIRAAFDFPVSRHRAEKPFSGHNVLFVRREDYLAHPRHVGKVESRLSNEQEVFDSLQ TWVSNHLECKVNLINGLFAHMSMKEQVRAVQDASVIIGAHGAGLTHIVSATPKTIILEIISSYFRRPHFQLIAEWKGLEYHAINLDGSHAHPSVVIDRFS RIMKSLGC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G55500		ATXYLT	"beta-1,2-xylosyltransferase",...		Potri.001G360600 [exp]	0	1
AT5G54310		NEV, AGD5	NEVERSHED, ARF-GAP domain 5 (....		Potri.011G127000 [exp]	5.00	0.6125
AT1G27461			unknown protein		Potri.014G015300 [exp]	11.74	0.6196
AT3G04530		ATPPCK2, PEPCK2...	phosphoenolpyruvate carboxylas...		Potri.019G018100 [exp]	11.87	0.6167	PPCK2.2
AT2G17200		DSK2	ubiquitin family protein (.1)		Potri.005G100200 [exp]	26.64	0.5932
AT5G65290			LMBR1-like membrane protein (....		Potri.007G096900 [exp]	27.49	0.5961
AT5G43100			Eukaryotic aspartyl protease f...		Potri.014G020200 [exp]	31.63	0.6017
AT5G13250			RING finger protein (.1)		Potri.001G062700 [exp]	39.49	0.5919
AT1G19860	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.005G236300 [exp]	42.33	0.5798
AT1G10280			Core-2/I-branching beta-1,6-N-...		Potri.003G001700 [exp]	51.38	0.5798
AT3G19950			RING/U-box superfamily protein...		Potri.005G090500 [exp]	55.69	0.5215

Compare expression of checked genes

Potri.001G360600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.