Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26690 835 / 0 GDPDL3, GPDL2, MRH5, SHV3 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) AT5G55480 826 / 0 GPDL1, GDPDL4, SVL1 glycerophosphodiesterase-like 1, Glycerophosphodiester phosphodiesterase \(GDPD\) like 4, SHV3-like 1 (.1) AT1G66970 820 / 0 GDPDL1, SVL2 Glycerophosphodiester phosphodiesterase \(GDPD\) like 1, SHV3-like 2 (.1.2) AT1G66980 777 / 0 GDPDL2, SNC4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) AT3G20520 692 / 0 GDPDL5, SVL3 Glycerophosphodiester phosphodiesterase \(GDPD\) like 5, SHV3-like 3 (.1) AT5G58170 619 / 0 GDPDL7, SVL5 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1) AT5G58050 619 / 0 GDPDL6, SVL4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 6, SHV3-like 4 (.1) AT1G74210 93 / 6e-20 AtGDPD5 glycerophosphodiester phosphodiesterase 5, PLC-like phosphodiesterases superfamily protein (.1) AT5G08030 89 / 1e-18 AtGDPD6 glycerophosphodiester phosphodiesterase 6, PLC-like phosphodiesterases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G360800 [exp] 1291 / 0 AT4G26690 850 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Potri.018G110600 [exp] 617 / 0 AT5G58050 870 / 0.0 Glycerophosphodiester phosphodiesterase \(GDPD\) like 6, SHV3-like 4 (.1) Potri.006G187600 [exp] 601 / 0 AT5G58170 893 / 0.0 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1) Potri.015G058400 [exp] 96 / 6e-21 AT1G74210 611 / 0.0 glycerophosphodiester phosphodiesterase 5, PLC-like phosphodiesterases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032576 [exp] 882 / 0 AT4G26690 850 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Lus10014903 [exp] 849 / 0 AT4G26690 833 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Lus10031604 [exp] 847 / 0 AT4G26690 817 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Lus10016584 [exp] 815 / 0 AT4G26690 801 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Lus10018042 [exp] 743 / 0 AT5G55480 721 / 0.0 glycerophosphodiesterase-like 1, Glycerophosphodiester phosphodiesterase \(GDPD\) like 4, SHV3-like 1 (.1) Lus10043171 [exp] 701 / 0 AT4G26690 665 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Lus10019605 [exp] 480 / 3e-159 AT5G58170 670 / 0.0 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1) Lus10040036 [exp] 397 / 5e-129 AT5G58170 520 / 6e-177 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1) Lus10040037 [exp] 397 / 1e-126 AT1G66980 580 / 0.0 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10019606 [exp] 365 / 3e-116 AT5G58170 454 / 9e-151 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0384 [poplar] [flax] PLC PF03009 [poplar] [flax] GDPD Glycerophosphoryl diester phosphodiesterase family
Representative CDS sequence Show only first row Show all	>Potri.001G360700.1 pacid=42791134 polypeptide=Potri.001G360700.1.p locus=Potri.001G360700 ID=Potri.001G360700.1.v4.1 annot-version=v4.1 ATGTGTAACTTACGCTCGTTCTTCACTCCTCTACTAGCTGTACTACTACTTCAGTCATTGGTGGTTGTTGTCTCTGCTCAGGGATCTGCTACTACCTGGC AAACACTCACCGGAAATCCCCCTTTAGTCATAGCACGTGGCGGGTTTTCAGGATTATTTCCTGATTCTAGCTCAGATGCTTTCCAGTTTGCAACACTTAC AAGTTTGCCGGGTGTTGTCCTATGGTGTGATGTGCAGTTAACTAAAGATAGTGTGGGGATTTGTGCCCCTGATCTCAGGCTTGACAATTCTACTAGCATT GCACAAGTTATGCAAAATAAGGATAAGTTGTACCTAGTTAATGGAATTCCTACCCGAGGATGGTTCACAGTGGATTTCACTCTCAATGAATTGTCACTTG TATCCTTGAATCAGGGAATCTTTTCTCGGAGTGAAAGGTTTGATTACATTTATCCCATCCAAACTGTTGAGGATGTGGCTACCTTAAAACCACCAGGCTT ATGGTTGAATATTCAGCATGATGCATTCTTCACACAGCACAATTTGAGTATGAGAAGCTATGTACTGTCTCTATACAGAAGGGTTGTCATTAATCATCTC TCATCACCAGAAGCGGGTTTCTTGAGAAGTATTGTTAAGAGATTTAACCTAAATATAACAAAACTGGTCTTCCGGTTTCTGGAATCAAATGTCATCGAGC CATCAACAAATGAGACATATGGTTCTCTCTCAAAGAACTTTACTTTCATCAAGACATTTGCATCTGGAATTCTTATCCCTAAGTCATACATATGGCCTTT AGATGCAAGTAATTACTTACAACCTCATACTTCTATCGTCTCGGATGCACACAAGGCAGGGCTAGAGGTTTTTGTATCAGAATTTTATAATGACGTTCCA CTAAGTTACAATTACAGTTATGATCCTGTAACTGAGTATCTCAGATTTGTTGACAATGGTGAATTCTCTGTTGATGGCGTGCTCTCTGACTTTCCAGTAA CTCCTTCTGCGACTATTGATTGTTTTTCTGGTCTGGGCAAGAATGCTACACCTCAAGTGAACCTTTCGGTCATCTCAAAAAATGGTGCAAGTGGAGACTA CCCTGGTTGCACTGATTTGGCTTACCAGAAAGCTATTTTAGATGGTGCTGATGTTATTGATTGTCCTGTTCAAATATCAAAAGACGGGATACCATTTTGC TTAGGCTCTATAAATCTTTATGACAGTACAACAGTTGCCCAATCAATTTACAGCAATCGTGAACAGAATATTCCACAGATTAAGGCAGGCAGTGGGATAT TCACCTTTAGCTTAACATGGAGTGAGATTCAGAACTTAACTCCGGTGATTTCCAATCCATATTCAAAATATGAATTGTTACGGAATCCCAAATTCAAAAA TTTAGGGAAGTTTCTAACATTGTCTGATTTCTTAGCATTGGCAAAGAACACTAGCTCGCTTTCTGGTGTCTTGATTAGCATTGAGAACGCAGCCTATCTT ATAGAGAAAGAGGGATTACCCATTACTGACAAAGTACTTGAAGTCTTGAGCTTAGCTGGTTATGATGATCCAACTTCCAAGAAAGTTATGATTGAGTCCA CCAACAGCTCAGTTCTAATGAAATTTAGGGACGAAAGCAATTATGAGCTTGTGTACCGGATTGAAGAGGATATTCAAGATGCTCAAGATGCAGCACTGAA GGACATCAAAGACTTTGCTAATTCTGTGGTCATCAGCAAGGCTTCTGTCTTTCCTGAAAGTTCTTCATTCCTCAGTGGTGTTACAAATGTTGTGCCAAAG CTGCAATCGCATGGGCTCTCAGTTTATGTGGAAACTTTCAGCAATGAGTTTGTATCTCAGGCATGGGACTTCTTCTCAGATTCAACAGTTGAAATTAACT CCTACGTCATGGGAGTCAACATCAGCGGTGTTATCACAGAATTCCCTCTGACTTCTGCCAGATACAAGAGGAACCGATGCTTGGGCTATAATGTTTTACC TCATTACATGAGCCCTGCTCAGCCTGGCGGTCTCATGCCGCTAATCCCACCTTTTGCCTTGCCCCCAGCTGAGCCTCCAAACCCAGTGTTAACTGCACCT GATGTTGTGGAGGGACCCTTGCCCTCTCATACAGCAAGTCCCCCAGTTCCAGGTGGTGGAGCTACAGCAGTACCACCAGGAGCTCCAAATGGGCTGCCCA AGATTGGTGCGTGCATCTTCCTGTCCAATTTGGCTATGCTCATCACCATTCTTCTGCTGCTTTAA
AA sequence Show only first row Show all	>Potri.001G360700.1 pacid=42791134 polypeptide=Potri.001G360700.1.p locus=Potri.001G360700 ID=Potri.001G360700.1.v4.1 annot-version=v4.1 MCNLRSFFTPLLAVLLLQSLVVVVSAQGSATTWQTLTGNPPLVIARGGFSGLFPDSSSDAFQFATLTSLPGVVLWCDVQLTKDSVGICAPDLRLDNSTSI AQVMQNKDKLYLVNGIPTRGWFTVDFTLNELSLVSLNQGIFSRSERFDYIYPIQTVEDVATLKPPGLWLNIQHDAFFTQHNLSMRSYVLSLYRRVVINHL SSPEAGFLRSIVKRFNLNITKLVFRFLESNVIEPSTNETYGSLSKNFTFIKTFASGILIPKSYIWPLDASNYLQPHTSIVSDAHKAGLEVFVSEFYNDVP LSYNYSYDPVTEYLRFVDNGEFSVDGVLSDFPVTPSATIDCFSGLGKNATPQVNLSVISKNGASGDYPGCTDLAYQKAILDGADVIDCPVQISKDGIPFC LGSINLYDSTTVAQSIYSNREQNIPQIKAGSGIFTFSLTWSEIQNLTPVISNPYSKYELLRNPKFKNLGKFLTLSDFLALAKNTSSLSGVLISIENAAYL IEKEGLPITDKVLEVLSLAGYDDPTSKKVMIESTNSSVLMKFRDESNYELVYRIEEDIQDAQDAALKDIKDFANSVVISKASVFPESSSFLSGVTNVVPK LQSHGLSVYVETFSNEFVSQAWDFFSDSTVEINSYVMGVNISGVITEFPLTSARYKRNRCLGYNVLPHYMSPAQPGGLMPLIPPFALPPAEPPNPVLTAP DVVEGPLPSHTASPPVPGGGATAVPPGAPNGLPKIGACIFLSNLAMLITILLLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G26690		GDPDL3, GPDL2, ...	SHAVEN 3, MUTANT ROOT HAIR 5, ...		Potri.001G360700 [exp]	0	1
AT2G34770		ATFAH1, FAH1	ARABIDOPSIS FATTY ACID HYDROXY...		Potri.001G463800 [exp]	7.34	0.7371	FAH1.2
AT3G55440		CYTOTPI, ATCTIM...	CYTOSOLIC ISOFORM TRIOSE PHOSP...		Potri.008G056300 [exp]	13.92	0.6701	CTIMC.1
AT4G31020			alpha/beta-Hydrolases superfam...		Potri.006G188100 [exp]	14.49	0.6178
AT2G43710		FAB2, SSI2	suppressor of SA insensitive 2...		Potri.013G127300 [exp]	20.39	0.6335
AT4G02100			Heat shock protein DnaJ with t...		Potri.014G122300 [exp]	21.72	0.6494
AT3G27890		NQR	NADPH:quinone oxidoreductase (...		Potri.003G195700 [exp]	38.88	0.6232	Pt-NQR.3
AT3G08600			Protein of unknown function (D...		Potri.016G141100 [exp]	43.41	0.5920
AT3G16850			Pectin lyase-like superfamily ...		Potri.008G211500 [exp]	49.83	0.6316
AT3G23820		GAE6	UDP-D-glucuronate 4-epimerase ...		Potri.001G320000 [exp]	51.38	0.5684	GAE6.1
AT4G35470		PIRL4, DREB1C	plant intracellular ras group-...		Potri.005G098600 [exp]	82.26	0.5650

Compare expression of checked genes

Potri.001G360700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.