Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26690 850 / 0 GDPDL3, GPDL2, MRH5, SHV3 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) AT5G55480 841 / 0 GPDL1, GDPDL4, SVL1 glycerophosphodiesterase-like 1, Glycerophosphodiester phosphodiesterase \(GDPD\) like 4, SHV3-like 1 (.1) AT1G66970 837 / 0 GDPDL1, SVL2 Glycerophosphodiester phosphodiesterase \(GDPD\) like 1, SHV3-like 2 (.1.2) AT1G66980 801 / 0 GDPDL2, SNC4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) AT3G20520 698 / 0 GDPDL5, SVL3 Glycerophosphodiester phosphodiesterase \(GDPD\) like 5, SHV3-like 3 (.1) AT5G58050 624 / 0 GDPDL6, SVL4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 6, SHV3-like 4 (.1) AT5G58170 623 / 0 GDPDL7, SVL5 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1) AT1G74210 94 / 4e-20 AtGDPD5 glycerophosphodiester phosphodiesterase 5, PLC-like phosphodiesterases superfamily protein (.1) AT5G08030 88 / 2e-18 AtGDPD6 glycerophosphodiester phosphodiesterase 6, PLC-like phosphodiesterases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G360700 [exp] 1297 / 0 AT4G26690 835 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Potri.018G110600 [exp] 615 / 0 AT5G58050 870 / 0.0 Glycerophosphodiester phosphodiesterase \(GDPD\) like 6, SHV3-like 4 (.1) Potri.006G187600 [exp] 607 / 0 AT5G58170 893 / 0.0 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1) Potri.015G058400 [exp] 99 / 5e-22 AT1G74210 611 / 0.0 glycerophosphodiester phosphodiesterase 5, PLC-like phosphodiesterases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032576 [exp] 898 / 0 AT4G26690 850 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Lus10014903 [exp] 869 / 0 AT4G26690 833 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Lus10031604 [exp] 857 / 0 AT4G26690 817 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Lus10016584 [exp] 839 / 0 AT4G26690 801 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Lus10018042 [exp] 754 / 0 AT5G55480 721 / 0.0 glycerophosphodiesterase-like 1, Glycerophosphodiester phosphodiesterase \(GDPD\) like 4, SHV3-like 1 (.1) Lus10043171 [exp] 710 / 0 AT4G26690 665 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Lus10019605 [exp] 483 / 3e-160 AT5G58170 670 / 0.0 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1) Lus10040037 [exp] 397 / 9e-127 AT1G66980 580 / 0.0 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10040036 [exp] 387 / 3e-125 AT5G58170 520 / 6e-177 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1) Lus10019606 [exp] 359 / 7e-114 AT5G58170 454 / 9e-151 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0384 [poplar] [flax] PLC PF03009 [poplar] [flax] GDPD Glycerophosphoryl diester phosphodiesterase family CL0384 [poplar] [flax] PLC PF13653 [poplar] [flax] GDPD_2 Glycerophosphoryl diester phosphodiesterase family
Representative CDS sequence Show only first row Show all	>Potri.001G360800.3 pacid=42788377 polypeptide=Potri.001G360800.3.p locus=Potri.001G360800 ID=Potri.001G360800.3.v4.1 annot-version=v4.1 ATGTGTAACTTACGCTCGTTCTTCACTCCTCTACTAGCTGTCCTACTACTTCAGTCATTGGTGGTTGTTGTCTCTGCTCAGGGATCTGCTAGTACCTGGC AAACACTCACCGGAAATCCCCCTTTAGTCATAGCACGTGGCGGGTTTTCAGGATTATTTCCTGATTCTAGCTCAGTTGCTTTCCAGTTTGCAACGCTTAC AAGTTTGCCGGATGTTGTCCTATGGTGTGATGTGCAGTTAACTAAAGATGGTGTGGGGATTTGTGCCCCTGATCTCAGGCTTGACAATTCTACTAGCATT GCTCAAGTTATGAAAAATAAAGATAAGTTGTACCTAGTTAATGGAATTCCTACCCAAGGATGGTTCACAGTGGATTTCACTCTCAATGAATTGTCACTTG TATCCTTGGCTCAGGGAATCTATTCTCGGAGTGAAAGGTTTGATAACACTTATCCCATCCAAACTGTTGAGGATGTGGCGAACTTAAAACCACCAGGCTT ATGGTTGAATATTCAGCATGATGCATTCTTCACACAGCACAATTTGAGTATGAGAATCTACGTACTGTCTCTATCCAGAAGGGTTGTCATTAATCATCTT TCATCACCAGAAGCGGGTTTCTTGAGAAGTATTGTTAAGAGATTTAACCTAAATATAACAAAACTGGTCTTTCGGTTTCTGGAACCAAATGTCATCGAGC CATCAACAAATGAGACATATGGTTCTCTCTCAAAGAACTTTACTTTCATCAAGACATTTGCATCTGGAATTCTTATCCCTAAGTCATACATATGGCCTTT AGATGCAAGTAATTACTTACAACCTCAGACTTCTATCGTCTCGGATGCACACAAGGCAGGGCTAGAGGTTTTTGTATCAGATTTTTATAATGACGCCCAA CTGAGTTACAATTACAGTTATGATCCTGTAACTGAGTATCTCAGTTTTGTTGACAATGGTGACTTCTCTGTTGATGGTGTGCTCTCTGACTTTCCAGTAA CTCCATCTGCGACTATTGATTGTTTTTCTGGTCTAGGCAAGAATGCTACACCTCAAGTGAACCTTTCGGTCATCTCAAAAAATGGTGCAAGTGGAGACTA CCCTGGTTGCACTGATTTGGCTTACCAGAAAGCTATTTTAGATGGTGCTGATGTTATTGATTGTCCTGTTCAAATATCAAAAGACGGGATACCATTTTGC TTGGGCTCTATAAATCTTTATGATAGTACAACAGTTGCCCAATCAAGTTACAGCAATCGTGAACAGAATATTCCACAGATTAAGGCAGGCGGTGGGATAT TCACCTTTAGCTTAACATGGAGTGAGATTCAGAACTTAACTCCGGTGATGTCCAATCCATATTCAAAATATTACTTGTTGCGGAATCCCAAATTCAGAAA TTCAGGGAATTTTCTAACATTGTCTGATTTCTTAGCATTGGCGAAGAACACTAGCTCGCTTTCTGGTGTCTTGATTAGCATTGAGAATGCAGCCTATCTT ATAGAGAAAGAGGGATTACCCGTTACTGACAAAGTACTTGAAGTCTTGAGCTTAGCTGGTTATGATGATCCAACTTCCAAGAAAGTTATGATTGAGTCCA CCAACAGCTCAGTTCTAATGAAATTTAGGGACAAAAACAATTATGAGCTTGTGTACCGGATTGAAGAGGATATTCAAGATGCTGAAGATGCAGCACTGAA GGACATCAAAGACTTTGCTAATTCTGTGGTCATCAGCAAGATCTCTGTCTTTCCTAAAAGTTCTTCATTCCTCACTGGTGTCACAAATGTTGTGCCAAAG CTGCAATCGCATGGGCTCTCAGTTTATGTGGAAACTTTCAACAATGAGTTTGTATCTCAGGCATGGGACTTCTTCTCAGATTCAACAGTTGAAATTAACT CCTACGTCATGGGAGCCAACATCAGCGGTGTTATCACAGAATTCCCTCTGACTTCTGCCAGATACAAGAGGAACCGATGCTTGGGCTATAATGTTTTACC TCCTTACATGAGCCCTGCTCAGCCTGGCGGTCTCATTCAGCTAATCTCACCTTTTGCCTTGCCCCCAGCTGAGCCTCCAAACCCAGTGTTAACTGCACCT GATGTTGTGGAGGGACCCTTGCCCTCTCATACAGCAAGTCCCCCAGTTCCAGGTGGTGGAGCTACAGCAGTACCACCAGGAGCTCCAAATGGGCTGCCCA AGATTGGTGCGTGCATCTTCCTGTCCAAGTTGGCTATGCTCATCACCATTCTTCTGCTGCTTTAA
AA sequence Show only first row Show all	>Potri.001G360800.3 pacid=42788377 polypeptide=Potri.001G360800.3.p locus=Potri.001G360800 ID=Potri.001G360800.3.v4.1 annot-version=v4.1 MCNLRSFFTPLLAVLLLQSLVVVVSAQGSASTWQTLTGNPPLVIARGGFSGLFPDSSSVAFQFATLTSLPDVVLWCDVQLTKDGVGICAPDLRLDNSTSI AQVMKNKDKLYLVNGIPTQGWFTVDFTLNELSLVSLAQGIYSRSERFDNTYPIQTVEDVANLKPPGLWLNIQHDAFFTQHNLSMRIYVLSLSRRVVINHL SSPEAGFLRSIVKRFNLNITKLVFRFLEPNVIEPSTNETYGSLSKNFTFIKTFASGILIPKSYIWPLDASNYLQPQTSIVSDAHKAGLEVFVSDFYNDAQ LSYNYSYDPVTEYLSFVDNGDFSVDGVLSDFPVTPSATIDCFSGLGKNATPQVNLSVISKNGASGDYPGCTDLAYQKAILDGADVIDCPVQISKDGIPFC LGSINLYDSTTVAQSSYSNREQNIPQIKAGGGIFTFSLTWSEIQNLTPVMSNPYSKYYLLRNPKFRNSGNFLTLSDFLALAKNTSSLSGVLISIENAAYL IEKEGLPVTDKVLEVLSLAGYDDPTSKKVMIESTNSSVLMKFRDKNNYELVYRIEEDIQDAEDAALKDIKDFANSVVISKISVFPKSSSFLTGVTNVVPK LQSHGLSVYVETFNNEFVSQAWDFFSDSTVEINSYVMGANISGVITEFPLTSARYKRNRCLGYNVLPPYMSPAQPGGLIQLISPFALPPAEPPNPVLTAP DVVEGPLPSHTASPPVPGGGATAVPPGAPNGLPKIGACIFLSKLAMLITILLLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G26690		GDPDL3, GPDL2, ...	SHAVEN 3, MUTANT ROOT HAIR 5, ...		Potri.001G360800 [exp]	0	1
AT5G07720			Galactosyl transferase GMA12/M...		Potri.015G061800 [exp]	5.74	0.8437
AT3G07210			unknown protein		Potri.002G245700 [exp]	7.34	0.8360
AT2G19880			Nucleotide-diphospho-sugar tra...		Potri.018G087700 [exp]	7.74	0.7916
AT1G68410			Protein phosphatase 2C family ...		Potri.008G123600 [exp]	8.00	0.8390
AT1G08200		AXS2	UDP-D-apiose/UDP-D-xylose synt...		Potri.009G150600 [exp]	10.19	0.8573	AXS1.1
AT5G05170		IXR1, CEV1, ATH...	ISOXABEN RESISTANT 1, CONSTIT...		Potri.016G054900 [exp]	10.95	0.8243	Pt-CESA4.2
AT1G71360			Galactose-binding protein (.1)		Potri.019G068900 [exp]	11.22	0.8010
AT5G54380		THE1	THESEUS1, protein kinase famil...		Potri.011G128000 [exp]	11.31	0.8041
AT5G45780			Leucine-rich repeat protein ki...		Potri.011G068700 [exp]	13.41	0.8178
AT1G08200		AXS2	UDP-D-apiose/UDP-D-xylose synt...		Potri.004G189900 [exp]	19.41	0.7918	AXS1.2

Compare expression of checked genes

Potri.001G360800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.