Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55530 432 / 2e-150 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) AT1G50570 285 / 8e-93 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT5G12300 194 / 7e-58 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G088400 [exp] 632 / 0 AT5G55530 418 / 9e-145 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) Potri.009G070400 [exp] 219 / 2e-66 AT5G12300 283 / 2e-92 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.001G275800 [exp] 213 / 3e-64 AT5G12300 285 / 7e-93 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003765 [exp] 455 / 8e-159 AT5G55530 451 / 1e-157 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) Lus10032578 [exp] 374 / 1e-127 AT5G55530 395 / 2e-136 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) Lus10043169 [exp] 268 / 2e-87 AT5G55530 274 / 4e-90 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) Lus10009692 [exp] 182 / 2e-53 AT5G12300 264 / 4e-86 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10016592 [exp] 151 / 3e-42 AT5G55530 152 / 5e-43 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) Lus10036036 [exp] 125 / 4e-32 AT5G12300 192 / 9e-58 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10001346 [exp] 63 / 5e-11 AT5G12300 72 / 9e-15 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10009693 [exp] 56 / 7e-10 AT5G12300 71 / 4e-16 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF00168 [poplar] [flax] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Potri.001G361100.3 pacid=42791148 polypeptide=Potri.001G361100.3.p locus=Potri.001G361100 ID=Potri.001G361100.3.v4.1 annot-version=v4.1 ATGGATTCCCCTCAATCTGTTGTGTCACCATTCAAGACCTCTGTTGTCTTTGAGCCAGAGAAGCAGAAATCTGATTGTTCTGTTCAGAGTACTGGCAACT TATCCAAGGGAATTGAGTTCCCCAGACATGAGGCTGTGGCTGGCCATCCAGAAGACTTCATTGGTATAGTTGAGGTTTACGTGCACCAGGCTAGGGACAT CCAAAACATATGCATTTACCACAAGCAAGATGTTTATGCTAAGTTTTGCTTGACTAGTGATCCTGAGTACACATTCTCCACCAAAATCATCAATGGTGGT GGGAGGAATCCTGTCTTCAACGACCGTCTGCAGCTCAATGTTAAGACTATTGATTCCTCCCTTAAATGTGAGATATTCATGATGAGTAGGGTGAAGAATT ATCTGGAGGATCAGCTGTTAGGGTTTGCTCTGGTTCCGTTGTCTGAAGTTCTAATCAATAACGGGAATTTGGAGAAAGAGTTCTCTCTTTCTTCAACTGA TTTGTTCCACTCTCCAGCAGGGTTTGTTCAATTGTCTCTATCATACGTTGGAGCTTCACCAGAGGTAATGGAAATTCCAGCAATGCCCACCGCTTTAGCT ACAAATGGAACCATCCAGGATTCTGAGATACAGGAATCACTCCCTTGCGAACTTGATAAGATTGAGTTCCCGGATCCAAAGGTTGTGAATGAAAACCAGA TGATGATCTCAGAGTATTTTGGAATTTCATGTTCTAGCCTGGATTCTGAAGCCTCTGAGAGCTTGGCCATTTCTAATGCTGAAAATAATCTCGGTTCAGA AATCGGAGTTCATGTTATGGAAAGCATTTCAGCCGCCACTTCTGATCCAACTCAAGTTCCAAAGCTTGATTCTCCTCCAAGCAGTGTGTCAACTAATGGT GTTTCTTCACCTTCCGCTGCTGCAAGTTCAGAAACCTCTGATAGCCCAGCAGCTTCAAAAACACCAAATCAGGAGCATGTCTCGGTCCATAAAGAGAGAG AGAGTGCAAATGCCGGAGATGGTGAGACTGATTGCTCTGGTGGAGCATCAAATGAGAAAAATGCAAAACCTGTTATTACAGTCAACATTGAGCCGGAGTC CAAAGTGGTTCAGCAAGACATAGTAGACATGTACATGAAAAGCATGCAGCAATTCACAGAGTCACTGGCCAAGATGAAGCTTCCTTTGGACATTGATAGT GGACCAACCAGTTCAGGAAGTTCAAGCTCCGATCAGAAAATGCAGGCATCAAAGAACACAAGTTCCCGTGTGTTTTATGGGAGTCGGGCTTTCTTCTGA
AA sequence Show only first row Show all	>Potri.001G361100.3 pacid=42791148 polypeptide=Potri.001G361100.3.p locus=Potri.001G361100 ID=Potri.001G361100.3.v4.1 annot-version=v4.1 MDSPQSVVSPFKTSVVFEPEKQKSDCSVQSTGNLSKGIEFPRHEAVAGHPEDFIGIVEVYVHQARDIQNICIYHKQDVYAKFCLTSDPEYTFSTKIINGG GRNPVFNDRLQLNVKTIDSSLKCEIFMMSRVKNYLEDQLLGFALVPLSEVLINNGNLEKEFSLSSTDLFHSPAGFVQLSLSYVGASPEVMEIPAMPTALA TNGTIQDSEIQESLPCELDKIEFPDPKVVNENQMMISEYFGISCSSLDSEASESLAISNAENNLGSEIGVHVMESISAATSDPTQVPKLDSPPSSVSTNG VSSPSAAASSETSDSPAASKTPNQEHVSVHKERESANAGDGETDCSGGASNEKNAKPVITVNIEPESKVVQQDIVDMYMKSMQQFTESLAKMKLPLDIDS GPTSSGSSSSDQKMQASKNTSSRVFYGSRAFF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G55530			Calcium-dependent lipid-bindin...		Potri.001G361100 [exp]	0	1
AT3G16560			Protein phosphatase 2C family ...		Potri.010G024800 [exp]	3.74	0.9199
AT2G27140			HSP20-like chaperones superfam...		Potri.004G191200 [exp]	6.32	0.9311
AT5G57130			Clp amino terminal domain-cont...		Potri.018G140900 [exp]	7.21	0.9153
AT2G27140			HSP20-like chaperones superfam...		Potri.004G191101 [exp]	9.27	0.9288
AT3G18670			Ankyrin repeat family protein ...		Potri.002G048832 [exp]	9.94	0.9288
AT1G75260			oxidoreductases, acting on NAD...		Potri.005G228400 [exp]	10.72	0.9217
AT3G50120			Plant protein of unknown funct...		Potri.006G042500 [exp]	13.19	0.9213
					Potri.005G047000 [exp]	14.14	0.9185
AT2G40230			HXXXD-type acyl-transferase fa...		Potri.010G186300 [exp]	14.62	0.8062
AT2G24520		AHA5	H\(+\)-ATPase 5, H\(+\)-ATPase...		Potri.018G006000 [exp]	15.87	0.9177	Pt-VHA1.1

Compare expression of checked genes

Potri.001G361100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.