Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55540 1900 / 0 LOP1, TRN1 LOPPED 1, tornado 1 (.1) AT1G10510 73 / 9e-13 EMB2004 embryo defective 2004, RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G193700 [exp] 56 / 2e-07 AT1G10510 813 / 0.0 embryo defective 2004, RNI-like superfamily protein (.1) Potri.010G091100 [exp] 51 / 6e-06 AT5G19320 646 / 0.0 RAN GTPase activating protein 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016591 [exp] 1207 / 0 AT5G55540 1027 / 0.0 LOPPED 1, tornado 1 (.1) Lus10003767 [exp] 791 / 0 AT5G55540 651 / 0.0 LOPPED 1, tornado 1 (.1) Lus10030829 [exp] 45 / 0.0004 AT1G10510 747 / 0.0 embryo defective 2004, RNI-like superfamily protein (.1) Lus10030658 [exp] 45 / 0.0005 AT1G10510 759 / 0.0 embryo defective 2004, RNI-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF16095 [poplar] [flax] COR C-terminal of Roc, COR, domain
Representative CDS sequence Show only first row Show all	>Potri.001G361200.2 pacid=42789420 polypeptide=Potri.001G361200.2.p locus=Potri.001G361200 ID=Potri.001G361200.2.v4.1 annot-version=v4.1 ATGGGATCGAACCAGAACCTTAGAGAGCTCCAATGGCTTCTTCAAATGATCAAATCCGAAAGCTTCAATCCTCAAAGCATTTCTTTCTACCTTTCTCACC GAACTTCAGGCTGTTACCAAGAAACAGAAAACTCTGTCAACATAAACATTTCAGAGGACAGCCTTTCATACTTCTCTAACATCCTCTCAGACCTAGGCAC AGCCAAAAACATTCAATCATCTTTAACGAACCTGGAGTTTCATCGTGTAGAGTGGGGATTAGAACAGCTAGTATACCTTGGAATATTGCTTCAGAATAGC TCAAACATCAAGCAACTTGTGTTTCGGCTGAATAGATTCAATATAGAATGCTTATCTGAGCTTTGCGAGGTCTTGAAGAGAAATAGAGTGATCAAAGAAA TTATGATTTCTGAATCAGGTATAGGTCCAGTTGGGGCTGGCCTTGTAGCTTCTGCTCTTAAGCTAAACGAGAGCTTGGAGGAGTTGCAGATATGGGAAGA CTCAATTGGTTCGAAAGGTGCTGAGGAGCTCTCAAAGATGATTGAAGTGAACTCAACACTTAAACTTCTGACAATTTTCGATTCACACCCTATAACAGCG GCTTCACTTATATCAGCTGTTTTAGCAAGAAATAGGGCAATGGAGGTTCATGTCTGGAGTGGAGAAAATGGAGAGAGAAGTTCCAAGGTAGTGGAGTTTG TACCTGACAACAGCACACTTCGAATTTACAGGCTACACCTTTCAGGTTCTGTCAGGGTTGCTTGCTCTCTAGGATGGAACTCCACAGTGAAGTCACTTGA CATGACTGGAGTCCGGCTGAAATCACGGTGGGCTAAGGAGTTTCGATGGGTTTTGGAACAAAATCGGAGCCTTAAGGAGGTAAGATTGTCAAAAACCAGC CTTAAGGACAAAGGGGTCGTGTACGTTGCAGCTGGACTCTTCAAGAATCAGTGTTTGGAAAGCTTGTATCTTGATGGAAACTGGTTCAGTGGAATAGGTG TAGAGCATTTGCTATGCCCTCTGAGCAGGTTCTCGGCCTTGCAATACCAAGCCAACATTACTCTCAAGTCTGTGACCTTTGGAGGAGGGAAAACAAGGAT TGGAAGGGATGGGCTCGCATCAATCATGCAGATGCTGACAACCAATGAGAGTGTGATTAAGTTGGGAATATATGATGATGAGAGCCTGGGAGCAGATGAT TTTGTCAAAATCTTCAAGAGCTTAGAGAGGAATGCGACTTTGAGATATTTGTCATTGCAAGGTTGTAGAGGGGTTCGAGGAGACGTGGTACTCGATTCAA TAATGCAGACATTGCAGGTAAATCCTTGGATTGAAGACATTGATCTTGCGAGAACACCACTGCAGAATTCAGGGAAGGCTGATGGAATTTATCAAAGGTT AGGCCAGAATGGAAAGACTGAACTAGAAACAGATACAGATTTGTTCAAGGACATGCCACTCACTGAGCCAAAAAGCTGCAGGGTTTTCTTCTGTGGGCAA GAATATGCAGGCAAGACTGCCCTTTGTAATTCAATATCTCAGAACTTCTCCTCCTCGAAGCTTCCCTACATAGACCAGGTTAGAAATCTAGTGAACCCAG TTGAACAGGCTGTAAGAGCAAGCGGAATGAAGATAAAGACTTTCAGAGATGAAGGCACAAAGATATCAATATGGAATCTTGGTGGTCAGCATGATTTTTA CTCCCTCCATGATCTCATGTTTCCAGGGCATGGGAGTGCATCATTCTTCCTGATCATATCCAGTTTATTCAGAAAGCCTAACAACCGAGAGCCAAAGACA CCAGCAGAGATAGAAGAGGACCTGCAATACTGGCTCAGGTTCATTGTTTCCAACTCAAGAAGAGCACTCCAGCAATGCATGCTGCCCAATGTAACTATAG TTCTTACACATTTTGATAAAATCAATCAACCGTCACAAAACTTGCAGCTTGCAGTGAATTCAATTCAGAGAGTAAGAGACAAGTTTCAAGGGTTTATCGA CTTCTATCCCACTGTATTCACAGTTGATGCGAGATCCTCTGCATCGGTCAGTAAACTCACTCATCATCTTCGGAAGACAAGCAAGACAATTCTCCAAAGA GTGCCCAGAGTTTATCAACTTTGCAATGACCTGATTCAAATTTTGTCAGACTGGAGAGCGGAGAATTACAACAAGCTTGCAATGAAGTGGAAAGAATTTG ATGAGCTATGCCAAGTGAAGGTTCCACCACTGAGAATTCGATCAAGACATGATAATAAAGGGAAGGTGGAAATGAGGAGGAAGGCTGTTGCTATTTGCCT TCATCATATGGGTGAGGTGATATATTTTGACGAACTAGGCTTCCTGATCCTAGACTGTGATTGGTTCTGTAGTGATGTGCTTGGCCAACTAGTAAAATTA GATGTTAGAAAGCAAAGCTCTATGGAGAACGGATTCGTTAGCAGAAATGAAGTGGAGAAGATTCTGAGAGGAAGTTTGCAAAGTCAAATTCCTGGAATGA GTTCAAAAGTACTTGAAAACATAGAGGCCAGTGACCTTGTGATGATGATGCTGAAACTAGAACTATGTTATGAACAAAACCCATCAGATCCAAACTCCCT GCTACTTATCCCCTCAATTCTTGAAGAAGGCAGAGGGAAACCCCAGAGATGGCAGTTAAGCACAGCTGACTGCGTTTATGCCGGGCGGCATCTTGAGTGT GATGATTCAAGCCACACATTTCTCACACCAGGCTTCTTTCCTCGTTTACAGGTTCATCTTCATAACAGAATTATGGCACTAAGGAACCAACATGGAGCAA CTTACAGTCTGGAGAAGTACCTCATCTCAATAAATATCAATGGGATCTTCATTAGGGTGGAACTTGGAGGACATTTAGGACACTACATTGATGTTCTTGC TTGCTCCACCAAGAACTTGACAGAAACCATTAGACTCACTCAGCAACTAATAATTCCAGCAATCCAGAGTTTCTGTAATGGATTCACCTTGACTGAAAAC ATCATGAGGCCTGAATGTGTGCAAAACTTGACACCCCCGAGGTATAGGAAAACCCAACATGTGTCTCTGCAGCAATTGAAGCAGGCACTGCTCTCAGTAC CTGCAGAAAGCATGTATGATTATCAACACACTTGGGATCCAGTTTCGGACTCTGGAAGACCTGTTCTTGGACCTGGATTTGATTTGGCTCGGGACCTCCT GTCAGATGATGACTTCAGGGAAGTCTTGCACCGTAGATATAATGACCTGTATAACCTTGCTGTGGAGTTGGATGTCCCGCCAGATAATCCAGATGGAGGA GATCACACAGGCAATGAACCTGAGAAAGTTGATCCAAGCTTTGCTGGAATCGCAAAGGGGGTAGAACAAGTGTTGCAGAGACTCAAGATCATTGAACAAG AGATAAAAGATTTGAAGCAGGAGATACAAGGACTGAAATACTATGAACACAGGCTCCTCATTGAACTTCATCGCAAAGTGAATTACCTTGTGAACTACAA TATCCAAGTTGAAGAAAGGAAAGTGCCTAACATGTTCTTTTTTGTTAGAACAGAAAACTACTCGAGAAGATTGATCACCAACATGATTTCTGGAATGACT GCACTTCGGCTGCACATGTTATGTGAATTCAGGGGAGAAATGCATGTTGTTGAAGATCAGATTGGTTGTGAAATGATGCAGGTTGATAACATGGCAGTAA AGAGTTTGGCTCCATACATGAAGAAATTCATGAAATTGTTAACATTTGCTCTCAAGATAGGAGCCCATCTGGCAGCTGGAATGGGAGAGATGATACCAGA TTTGAGCAGAGAAGTTTCCCATCTGTCCGGCTCTTCCCTTATGTACGGGGCAGCAGGAACAGTTGCTGCTGGAGCTGTAGGGGCTGCAGCTCTGGGGCGA ATACAAGGAAGTAGGAACAGAAGCAGGGCTGCAGAAAGCTCAAGAAACATTCAACAAGACGTAAAGGCAGCACAGCAGTGGGTGGTGGATTTTTTAAGGG ACCGTAGGTGCTCGACTGGAAAGGATATTGCCGAGAAGTTTGGATTGTGGAGGGTTAGATACAGGGATGATGGGCAGATAGCATGGATCTGTAGGAGGCA TATGGCCATAAGGTGCAATGAAATAATTGAAGTACCTATTTGA
AA sequence Show only first row Show all	>Potri.001G361200.2 pacid=42789420 polypeptide=Potri.001G361200.2.p locus=Potri.001G361200 ID=Potri.001G361200.2.v4.1 annot-version=v4.1 MGSNQNLRELQWLLQMIKSESFNPQSISFYLSHRTSGCYQETENSVNINISEDSLSYFSNILSDLGTAKNIQSSLTNLEFHRVEWGLEQLVYLGILLQNS SNIKQLVFRLNRFNIECLSELCEVLKRNRVIKEIMISESGIGPVGAGLVASALKLNESLEELQIWEDSIGSKGAEELSKMIEVNSTLKLLTIFDSHPITA ASLISAVLARNRAMEVHVWSGENGERSSKVVEFVPDNSTLRIYRLHLSGSVRVACSLGWNSTVKSLDMTGVRLKSRWAKEFRWVLEQNRSLKEVRLSKTS LKDKGVVYVAAGLFKNQCLESLYLDGNWFSGIGVEHLLCPLSRFSALQYQANITLKSVTFGGGKTRIGRDGLASIMQMLTTNESVIKLGIYDDESLGADD FVKIFKSLERNATLRYLSLQGCRGVRGDVVLDSIMQTLQVNPWIEDIDLARTPLQNSGKADGIYQRLGQNGKTELETDTDLFKDMPLTEPKSCRVFFCGQ EYAGKTALCNSISQNFSSSKLPYIDQVRNLVNPVEQAVRASGMKIKTFRDEGTKISIWNLGGQHDFYSLHDLMFPGHGSASFFLIISSLFRKPNNREPKT PAEIEEDLQYWLRFIVSNSRRALQQCMLPNVTIVLTHFDKINQPSQNLQLAVNSIQRVRDKFQGFIDFYPTVFTVDARSSASVSKLTHHLRKTSKTILQR VPRVYQLCNDLIQILSDWRAENYNKLAMKWKEFDELCQVKVPPLRIRSRHDNKGKVEMRRKAVAICLHHMGEVIYFDELGFLILDCDWFCSDVLGQLVKL DVRKQSSMENGFVSRNEVEKILRGSLQSQIPGMSSKVLENIEASDLVMMMLKLELCYEQNPSDPNSLLLIPSILEEGRGKPQRWQLSTADCVYAGRHLEC DDSSHTFLTPGFFPRLQVHLHNRIMALRNQHGATYSLEKYLISININGIFIRVELGGHLGHYIDVLACSTKNLTETIRLTQQLIIPAIQSFCNGFTLTEN IMRPECVQNLTPPRYRKTQHVSLQQLKQALLSVPAESMYDYQHTWDPVSDSGRPVLGPGFDLARDLLSDDDFREVLHRRYNDLYNLAVELDVPPDNPDGG DHTGNEPEKVDPSFAGIAKGVEQVLQRLKIIEQEIKDLKQEIQGLKYYEHRLLIELHRKVNYLVNYNIQVEERKVPNMFFFVRTENYSRRLITNMISGMT ALRLHMLCEFRGEMHVVEDQIGCEMMQVDNMAVKSLAPYMKKFMKLLTFALKIGAHLAAGMGEMIPDLSREVSHLSGSSLMYGAAGTVAAGAVGAAALGR IQGSRNRSRAAESSRNIQQDVKAAQQWVVDFLRDRRCSTGKDIAEKFGLWRVRYRDDGQIAWICRRHMAIRCNEIIEVPI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G55540		LOP1, TRN1	LOPPED 1, tornado 1 (.1)		Potri.001G361200 [exp]	0	1
AT5G58320			Kinase interacting (KIP1-like)...		Potri.019G061600 [exp]	1.00	0.8659
AT2G01820		CYCJ18	Leucine-rich repeat protein ki...		Potri.010G103000 [exp]	1.73	0.8317
AT3G44716			unknown protein		Potri.009G148200 [exp]	2.00	0.8384
AT3G05900			neurofilament protein-related ...		Potri.013G001150 [exp]	2.64	0.7706
AT2G46920		POL	poltergeist, Protein phosphata...		Potri.002G185000 [exp]	4.69	0.7584	POL.2
AT3G09070			Protein of unknown function (D...		Potri.016G111400 [exp]	5.29	0.8006
AT3G55550			Concanavalin A-like lectin pro...		Potri.016G101000 [exp]	5.29	0.7255	Pt-LECRK7.1
AT4G18820			AAA-type ATPase family protein...		Potri.011G071300 [exp]	5.47	0.7805
AT2G01210			Leucine-rich repeat protein ki...		Potri.008G124300 [exp]	7.74	0.7536
AT1G10120	bHLH	bHLH074, CIB4	basic helix-loop-helix (bHLH) ...		Potri.002G114700 [exp]	10.00	0.7862

Compare expression of checked genes

Potri.001G361200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.